RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 BCL2L12Q9HB09 334 aa16.81■□□□□ 0.28
CLK3-224ENST00000568605 SALL2Q9Y467 1007 aaPredicted RBP16.81■□□□□ 0.28
CLK3-224ENST00000568605 PXDNLA1KZ92 1463 aa16.8■□□□□ 0.28
CLK3-224ENST00000568605 ATP10DQ9P241 1426 aa16.8■□□□□ 0.28
CLK3-224ENST00000568605 TM4SF1P30408 202 aa16.8■□□□□ 0.28
CLK3-224ENST00000568605 KRT24Q2M2I5 525 aa16.8■□□□□ 0.28
CLK3-224ENST00000568605 MAP3K15Q6ZN16 1313 aa16.79■□□□□ 0.28
CLK3-224ENST00000568605 NPHP1O15259 732 aa16.79■□□□□ 0.28
CLK3-224ENST00000568605 BICDL1Q6ZP65 573 aa16.79■□□□□ 0.28
CLK3-224ENST00000568605 NLGN2Q8NFZ4 835 aa16.79■□□□□ 0.28
CLK3-224ENST00000568605 SETDB2Q96T68 719 aa16.79■□□□□ 0.28
CLK3-224ENST00000568605 DDX21Q9NR30 783 aaKnown RBP eCLIP16.79■□□□□ 0.28
CLK3-224ENST00000568605 DBF4Q9UBU7 674 aaPredicted RBP16.79■□□□□ 0.28
CLK3-224ENST00000568605 FANCIQ9NVI1 1328 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 ERVV-1B6SEH8 477 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 TBC1D9BQ66K14 1250 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 NECTIN2Q92692 538 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 TSR2Q969E8 191 aaKnown RBP16.78■□□□□ 0.28
CLK3-224ENST00000568605 MYH16Q9H6N6 1097 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 CHPF2Q9P2E5 772 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 MYH3P11055 1940 aa16.78■□□□□ 0.28
CLK3-224ENST00000568605 SERPINB2P05120 415 aa16.77■□□□□ 0.28
CLK3-224ENST00000568605 TGFB2P61812 414 aa16.77■□□□□ 0.28
CLK3-224ENST00000568605 CCDC88AQ3V6T2 1871 aa16.76■□□□□ 0.27
CLK3-224ENST00000568605 TNRC6CQ9HCJ0 1690 aaKnown RBP16.76■□□□□ 0.27
CLK3-224ENST00000568605 GOLGA2Q08379 1002 aa16.76■□□□□ 0.27
CLK3-224ENST00000568605 MIER1Q8N108 512 aa16.76■□□□□ 0.27
CLK3-224ENST00000568605 CNBD1Q8NA66 436 aa16.76■□□□□ 0.27
CLK3-224ENST00000568605 HYPKQ9NX55 129 aa16.76■□□□□ 0.27
CLK3-224ENST00000568605 IBTKQ9P2D0 1353 aaPredicted RBP16.76■□□□□ 0.27
CLK3-224ENST00000568605 ST5P78524 1137 aa16.75■□□□□ 0.27
CLK3-224ENST00000568605 PDIA6Q15084 440 aa16.75■□□□□ 0.27
CLK3-224ENST00000568605 GPR162Q16538 588 aa16.75■□□□□ 0.27
CLK3-224ENST00000568605 TWISTNBQ3B726 338 aaPredicted RBP16.75■□□□□ 0.27
CLK3-224ENST00000568605 CCDC30Q5VVM6 783 aa16.75■□□□□ 0.27
CLK3-224ENST00000568605 TTLL7Q6ZT98 887 aa16.75■□□□□ 0.27
CLK3-224ENST00000568605 PELP1Q8IZL8 1130 aaKnown RBP16.75■□□□□ 0.27
CLK3-224ENST00000568605 ZBTB3Q9H5J0 574 aa16.75■□□□□ 0.27
CLK3-224ENST00000568605 NIP7Q9Y221 180 aaKnown RBP eCLIP16.75■□□□□ 0.27
CLK3-224ENST00000568605 DDX60Q8IY21 1712 aaKnown RBP16.75■□□□□ 0.27
CLK3-224ENST00000568605 ELL2O00472 640 aaPredicted RBP16.74■□□□□ 0.27
CLK3-224ENST00000568605 ANXA1P04083 346 aa16.74■□□□□ 0.27
CLK3-224ENST00000568605 PROSER3Q2NL68 480 aa16.74■□□□□ 0.27
CLK3-224ENST00000568605 HSP90AB3PQ58FF7 597 aa16.74■□□□□ 0.27
CLK3-224ENST00000568605 NBPF5PQ86XG9 351 aaPredicted RBP16.74■□□□□ 0.27
CLK3-224ENST00000568605 C8orf58Q8NAV2 365 aa16.74■□□□□ 0.27
CLK3-224ENST00000568605 STK31Q9BXU1 1019 aa16.74■□□□□ 0.27
CLK3-224ENST00000568605 ZNF521Q96K83 1311 aa16.73■□□□□ 0.27
CLK3-224ENST00000568605 GIGYF2Q6Y7W6 1299 aaKnown RBP16.73■□□□□ 0.27
CLK3-224ENST00000568605 LRP10Q7Z4F1 713 aa16.73■□□□□ 0.27
CLK3-224ENST00000568605 NYXQ9GZU5 481 aa16.73■□□□□ 0.27
CLK3-224ENST00000568605 PDZRN3Q9UPQ7 1066 aa16.73■□□□□ 0.27
CLK3-224ENST00000568605 SBF1O95248 1867 aa16.72■□□□□ 0.27
CLK3-224ENST00000568605 AIMP1Q12904 312 aaKnown RBP16.72■□□□□ 0.27
CLK3-224ENST00000568605 COPS6Q7L5N1 327 aa16.72■□□□□ 0.27
CLK3-224ENST00000568605 XAGE3Q8WTP9 111 aa16.72■□□□□ 0.27
CLK3-224ENST00000568605 RIC1Q4ADV7 1423 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 GRIN3BO60391 1043 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 PDE6BP35913 854 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 HLFQ16534 295 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 PRR5LQ6MZQ0 368 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 TPTE2Q6XPS3 522 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 FER1L6Q2WGJ9 1857 aa16.71■□□□□ 0.27
CLK3-224ENST00000568605 DICER1Q9UPY3 1922 aaKnown RBP16.7■□□□□ 0.26
CLK3-224ENST00000568605 E9PSI1 815 aa16.7■□□□□ 0.26
CLK3-224ENST00000568605 DDX58O95786 925 aaKnown RBP16.7■□□□□ 0.26
CLK3-224ENST00000568605 DPEP1P16444 411 aa16.7■□□□□ 0.26
CLK3-224ENST00000568605 GTF2E1P29083 439 aaPredicted RBP16.7■□□□□ 0.26
CLK3-224ENST00000568605 PARP10Q53GL7 1025 aa16.7■□□□□ 0.26
CLK3-224ENST00000568605 TSPYL6Q8N831 410 aa16.7■□□□□ 0.26
CLK3-224ENST00000568605 BRIP1Q9BX63 1249 aa16.7■□□□□ 0.26
CLK3-224ENST00000568605 EXOSC9Q06265 439 aaKnown RBP16.69■□□□□ 0.26
CLK3-224ENST00000568605 PPP1R42Q7Z4L9 355 aa16.69■□□□□ 0.26
CLK3-224ENST00000568605 PLBD2Q8NHP8 589 aa16.69■□□□□ 0.26
CLK3-224ENST00000568605 PIM2Q9P1W9 311 aa16.69■□□□□ 0.26
CLK3-224ENST00000568605 RNF123Q5XPI4 1314 aa16.69■□□□□ 0.26
CLK3-224ENST00000568605 SLX4Q8IY92 1834 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 TIAM2Q8IVF5 1701 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 A0A0G2JLW4 131 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 H0YIN7 160 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 GPTP24298 496 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 ANKRD13DQ6ZTN6 518 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 UBN2Q6ZU65 1347 aa16.68■□□□□ 0.26
CLK3-224ENST00000568605 FAM177BA6PVY3 158 aa16.67■□□□□ 0.26
CLK3-224ENST00000568605 C2CD5Q86YS7 1000 aa16.67■□□□□ 0.26
CLK3-224ENST00000568605 ZNF34Q8IZ26 560 aa16.67■□□□□ 0.26
CLK3-224ENST00000568605 BCS1LQ9Y276 419 aa16.67■□□□□ 0.26
CLK3-224ENST00000568605 YBX3P16989 372 aaKnown RBP eCLIP16.66■□□□□ 0.26
CLK3-224ENST00000568605 CHRNA5P30532 468 aa16.66■□□□□ 0.26
CLK3-224ENST00000568605 DALRD3Q5D0E6 543 aaKnown RBP16.66■□□□□ 0.26
CLK3-224ENST00000568605 RIC3Q7Z5B4 369 aa16.66■□□□□ 0.26
CLK3-224ENST00000568605 SPINK5Q9NQ38 1064 aaPredicted RBP16.66■□□□□ 0.26
CLK3-224ENST00000568605 GOLGB1Q14789 3259 aaKnown RBP16.65■□□□□ 0.26
CLK3-224ENST00000568605 TCIRG1Q13488 830 aa16.65■□□□□ 0.26
CLK3-224ENST00000568605 WWC3Q9ULE0 1092 aa16.65■□□□□ 0.26
CLK3-224ENST00000568605 SPEF2Q9C093 1822 aa16.65■□□□□ 0.26
CLK3-224ENST00000568605 ABCC12Q96J65 1359 aa16.64■□□□□ 0.26
CLK3-224ENST00000568605 UTP14AQ9BVJ6 771 aaKnown RBP16.64■□□□□ 0.25
CLK3-224ENST00000568605 PHAXQ9H814 394 aaKnown RBP16.64■□□□□ 0.25
CLK3-224ENST00000568605 TAF1P21675 1872 aa16.64■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 398.3 ms