RNA–Protein interactions for RNA: ENST00000567935.1

COMMD4-221, Transcript of COMM domain containing 4, humanhuman

TSL 3

Gene COMMD4, Length 502 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-221ENST00000567935 PHF14O94880 888 aa18.42■□□□□ 0.54
COMMD4-221ENST00000567935 ARHGAP27Q6ZUM4 889 aa18.42■□□□□ 0.54
COMMD4-221ENST00000567935 LGR6Q9HBX8 967 aa18.42■□□□□ 0.54
COMMD4-221ENST00000567935 C4BP0C0L5 1744 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 BTBD11A6QL63 1104 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 IGHDP01880 384 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 SLC4A2P04920 1241 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 PHKG2P15735 406 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 EIF4A1P60842 406 aaKnown RBP18.41■□□□□ 0.54
COMMD4-221ENST00000567935 MPRIPQ6WCQ1 1025 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 PCDH10Q9P2E7 1040 aa18.41■□□□□ 0.54
COMMD4-221ENST00000567935 RBM19Q9Y4C8 960 aaKnown RBP18.41■□□□□ 0.54
COMMD4-221ENST00000567935 MRC1P22897 1456 aa18.4■□□□□ 0.54
COMMD4-221ENST00000567935 ZBTB7BO15156 539 aaPredicted RBP18.4■□□□□ 0.54
COMMD4-221ENST00000567935 C9orf131Q5VYM1 1079 aa18.4■□□□□ 0.54
COMMD4-221ENST00000567935 N4BP2Q86UW6 1770 aaPredicted RBP18.4■□□□□ 0.54
COMMD4-221ENST00000567935 DCAF5Q96JK2 942 aa18.39■□□□□ 0.53
COMMD4-221ENST00000567935 AK7Q96M32 723 aa18.39■□□□□ 0.53
COMMD4-221ENST00000567935 PALLDQ8WX93 1383 aa18.39■□□□□ 0.53
COMMD4-221ENST00000567935 UBR3Q6ZT12 1888 aa18.39■□□□□ 0.53
COMMD4-221ENST00000567935 C10orf71Q711Q0 1435 aa18.39■□□□□ 0.53
COMMD4-221ENST00000567935 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.38■□□□□ 0.53
COMMD4-221ENST00000567935 CCT4P50991 539 aaKnown RBP18.38■□□□□ 0.53
COMMD4-221ENST00000567935 ZCRB1Q8TBF4 217 aaKnown RBP18.38■□□□□ 0.53
COMMD4-221ENST00000567935 RRAGCQ9HB90 399 aa18.38■□□□□ 0.53
COMMD4-221ENST00000567935 A0A0G2JLW4 131 aa18.37■□□□□ 0.53
COMMD4-221ENST00000567935 HDGFL1Q5TGJ6 251 aa18.37■□□□□ 0.53
COMMD4-221ENST00000567935 SLC52A2Q9HAB3 445 aa18.37■□□□□ 0.53
COMMD4-221ENST00000567935 PCDH11XQ9BZA7 1347 aa18.37■□□□□ 0.53
COMMD4-221ENST00000567935 PCDH11YQ9BZA8 1340 aa18.37■□□□□ 0.53
COMMD4-221ENST00000567935 HEG1Q9ULI3 1381 aa18.37■□□□□ 0.53
COMMD4-221ENST00000567935 KDM6AO15550 1401 aaPredicted RBP18.36■□□□□ 0.53
COMMD4-221ENST00000567935 SMC1BQ8NDV3 1235 aa18.36■□□□□ 0.53
COMMD4-221ENST00000567935 KIF13BQ9NQT8 1826 aa18.36■□□□□ 0.53
COMMD4-221ENST00000567935 FLIIQ13045 1269 aa18.35■□□□□ 0.53
COMMD4-221ENST00000567935 SMC5Q8IY18 1101 aa18.35■□□□□ 0.53
COMMD4-221ENST00000567935 CYP27B1O15528 508 aa18.33■□□□□ 0.52
COMMD4-221ENST00000567935 MMP10P09238 476 aa18.33■□□□□ 0.52
COMMD4-221ENST00000567935 TGFB2P61812 414 aa18.33■□□□□ 0.52
COMMD4-221ENST00000567935 TNRC6CQ9HCJ0 1690 aaKnown RBP18.33■□□□□ 0.52
COMMD4-221ENST00000567935 SSFA2P28290 1259 aa18.32■□□□□ 0.52
COMMD4-221ENST00000567935 NKX1-1Q15270 411 aaPredicted RBP18.32■□□□□ 0.52
COMMD4-221ENST00000567935 FAM161AQ3B820 660 aa18.32■□□□□ 0.52
COMMD4-221ENST00000567935 GCC1Q96CN9 775 aa18.32■□□□□ 0.52
COMMD4-221ENST00000567935 DBF4Q9UBU7 674 aaPredicted RBP18.32■□□□□ 0.52
COMMD4-221ENST00000567935 DPEP1P16444 411 aa18.31■□□□□ 0.52
COMMD4-221ENST00000567935 FKBP5Q13451 457 aaPredicted RBP18.31■□□□□ 0.52
COMMD4-221ENST00000567935 ERVV-2B6SEH9 535 aa18.3■□□□□ 0.52
COMMD4-221ENST00000567935 PDE4AP27815 886 aa18.3■□□□□ 0.52
COMMD4-221ENST00000567935 ZNF790Q6PG37 636 aa18.3■□□□□ 0.52
COMMD4-221ENST00000567935 G2E3Q7L622 706 aa18.3■□□□□ 0.52
COMMD4-221ENST00000567935 RPAP2Q8IXW5 612 aaPredicted RBP18.3■□□□□ 0.52
COMMD4-221ENST00000567935 BACH2Q9BYV9 841 aa18.3■□□□□ 0.52
COMMD4-221ENST00000567935 PDZRN3Q9UPQ7 1066 aa18.3■□□□□ 0.52
COMMD4-221ENST00000567935 BRCA1P38398 1863 aaKnown RBP18.3■□□□□ 0.52
COMMD4-221ENST00000567935 HMGB2P26583 209 aaKnown RBP18.29■□□□□ 0.52
COMMD4-221ENST00000567935 RNF181Q9P0P0 153 aa18.29■□□□□ 0.52
COMMD4-221ENST00000567935 KCNQ3O43525 872 aa18.28■□□□□ 0.52
COMMD4-221ENST00000567935 GNAI3P08754 354 aa18.28■□□□□ 0.52
COMMD4-221ENST00000567935 LINC00116Q8NCU8 138 aa18.28■□□□□ 0.52
COMMD4-221ENST00000567935 FOXN1O15353 648 aa18.27■□□□□ 0.52
COMMD4-221ENST00000567935 RGS3P49796 1198 aa18.27■□□□□ 0.52
COMMD4-221ENST00000567935 CABP4P57796 275 aa18.27■□□□□ 0.52
COMMD4-221ENST00000567935 TTC5Q8N0Z6 440 aa18.27■□□□□ 0.52
COMMD4-221ENST00000567935 HYPKQ9NX55 129 aa18.27■□□□□ 0.52
COMMD4-221ENST00000567935 ARFGEF1Q9Y6D6 1849 aa18.26■□□□□ 0.51
COMMD4-221ENST00000567935 EIF2S2P20042 333 aaKnown RBP18.26■□□□□ 0.51
COMMD4-221ENST00000567935 ANKRD44Q8N8A2 993 aa18.26■□□□□ 0.51
COMMD4-221ENST00000567935 NFATC2IPQ8NCF5 419 aa18.26■□□□□ 0.51
COMMD4-221ENST00000567935 HMMRO75330 724 aa18.25■□□□□ 0.51
COMMD4-221ENST00000567935 KCNA3P22001 575 aa18.25■□□□□ 0.51
COMMD4-221ENST00000567935 NUCB1Q02818 461 aa18.25■□□□□ 0.51
COMMD4-221ENST00000567935 SLC4A10Q6U841 1118 aa18.25■□□□□ 0.51
COMMD4-221ENST00000567935 FMNL2Q96PY5 1086 aa18.25■□□□□ 0.51
COMMD4-221ENST00000567935 DDX21Q9NR30 783 aaKnown RBP eCLIP18.25■□□□□ 0.51
COMMD4-221ENST00000567935 CHPF2Q9P2E5 772 aa18.25■□□□□ 0.51
COMMD4-221ENST00000567935 IBTKQ9P2D0 1353 aaPredicted RBP18.25■□□□□ 0.51
COMMD4-221ENST00000567935 GNPATO15228 680 aa18.24■□□□□ 0.51
COMMD4-221ENST00000567935 SNRPA1P09661 255 aaKnown RBP18.24■□□□□ 0.51
COMMD4-221ENST00000567935 NECTIN2Q92692 538 aa18.24■□□□□ 0.51
COMMD4-221ENST00000567935 SMARCC1Q92922 1105 aaPredicted RBP18.24■□□□□ 0.51
COMMD4-221ENST00000567935 DDX58O95786 925 aaKnown RBP18.23■□□□□ 0.51
COMMD4-221ENST00000567935 PRDM10Q9NQV6 1147 aa18.23■□□□□ 0.51
COMMD4-221ENST00000567935 HDAC5Q9UQL6 1122 aa18.23■□□□□ 0.51
COMMD4-221ENST00000567935 ERBB4Q15303 1308 aa18.23■□□□□ 0.51
COMMD4-221ENST00000567935 F6X3S4 739 aa18.22■□□□□ 0.51
COMMD4-221ENST00000567935 GNAI2P04899 355 aa18.22■□□□□ 0.51
COMMD4-221ENST00000567935 CEP85Q6P2H3 762 aa18.22■□□□□ 0.51
COMMD4-221ENST00000567935 DNAAF4Q8WXU2 420 aa18.22■□□□□ 0.51
COMMD4-221ENST00000567935 MEIS3Q99687 375 aa18.22■□□□□ 0.51
COMMD4-221ENST00000567935 MKRN1Q9UHC7 482 aaKnown RBP18.22■□□□□ 0.51
COMMD4-221ENST00000567935 LAMB4A4D0S4 1761 aa18.22■□□□□ 0.51
COMMD4-221ENST00000567935 ITGB4P16144 1822 aa18.21■□□□□ 0.51
COMMD4-221ENST00000567935 ITPK1Q13572 414 aa18.21■□□□□ 0.51
COMMD4-221ENST00000567935 SIRT2Q8IXJ6 389 aa18.21■□□□□ 0.51
COMMD4-221ENST00000567935 SRCIN1Q9C0H9 1055 aa18.21■□□□□ 0.51
COMMD4-221ENST00000567935 C1orf115Q9H7X2 142 aa18.21■□□□□ 0.51
COMMD4-221ENST00000567935 CCDC87Q9NVE4 849 aa18.21■□□□□ 0.51
COMMD4-221ENST00000567935 C4AP0C0L4 1744 aa18.2■□□□□ 0.5
COMMD4-221ENST00000567935 UBR2Q8IWV8 1755 aa18.2■□□□□ 0.5
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms