RNA–Protein interactions for RNA: ENST00000565995.5

RNF40-208, Transcript of ring finger protein 40, humanhuman

TSL 4

Gene RNF40, Length 586 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-208ENST00000565995 KIF7Q2M1P5 1343 aa17.23■□□□□ 0.35
RNF40-208ENST00000565995 PASKQ96RG2 1323 aa17.23■□□□□ 0.35
RNF40-208ENST00000565995 KLRG2A4D1S0 409 aaPredicted RBP17.23■□□□□ 0.35
RNF40-208ENST00000565995 DDNO94850 711 aaPredicted RBP17.23■□□□□ 0.35
RNF40-208ENST00000565995 CLEC4GQ6UXB4 293 aa17.23■□□□□ 0.35
RNF40-208ENST00000565995 CNBD1Q8NA66 436 aa17.23■□□□□ 0.35
RNF40-208ENST00000565995 TRPM7Q96QT4 1865 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 DLG5Q8TDM6 1919 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 RGL2O15211 777 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 A1BGP04217 495 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 POTEIP0CG38 1075 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 POTEJP0CG39 1038 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 PRPF40BQ6NWY9 871 aaKnown RBP17.22■□□□□ 0.35
RNF40-208ENST00000565995 CCDC24Q8N4L8 307 aa17.22■□□□□ 0.35
RNF40-208ENST00000565995 LAMB4A4D0S4 1761 aa17.21■□□□□ 0.35
RNF40-208ENST00000565995 CNTNAP1P78357 1384 aa17.21■□□□□ 0.35
RNF40-208ENST00000565995 IQCA1LA6NCM1 817 aa17.21■□□□□ 0.35
RNF40-208ENST00000565995 ST5P78524 1137 aa17.21■□□□□ 0.35
RNF40-208ENST00000565995 ZNF219Q9P2Y4 722 aaPredicted RBP17.21■□□□□ 0.35
RNF40-208ENST00000565995 LDHDQ86WU2 507 aa17.2■□□□□ 0.34
RNF40-208ENST00000565995 ITGBL1O95965 494 aaPredicted RBP17.19■□□□□ 0.34
RNF40-208ENST00000565995 DZIP3Q86Y13 1208 aaKnown RBP17.19■□□□□ 0.34
RNF40-208ENST00000565995 TAF1DQ9H5J8 278 aaPredicted RBP17.19■□□□□ 0.34
RNF40-208ENST00000565995 PRDM10Q9NQV6 1147 aa17.19■□□□□ 0.34
RNF40-208ENST00000565995 CC2D1BQ5T0F9 858 aaKnown RBP17.18■□□□□ 0.34
RNF40-208ENST00000565995 NPM2Q86SE8 214 aaKnown RBP17.18■□□□□ 0.34
RNF40-208ENST00000565995 MKRN1Q9UHC7 482 aaKnown RBP17.18■□□□□ 0.34
RNF40-208ENST00000565995 USP16Q9Y5T5 823 aa17.18■□□□□ 0.34
RNF40-208ENST00000565995 BTBD11A6QL63 1104 aa17.17■□□□□ 0.34
RNF40-208ENST00000565995 KCNQ3O43525 872 aa17.17■□□□□ 0.34
RNF40-208ENST00000565995 NPR1P16066 1061 aa17.17■□□□□ 0.34
RNF40-208ENST00000565995 ZNF330Q9Y3S2 320 aaPredicted RBP17.17■□□□□ 0.34
RNF40-208ENST00000565995 FOXN1O15353 648 aa17.16■□□□□ 0.34
RNF40-208ENST00000565995 FKBP4Q02790 459 aaKnown RBP eCLIP17.16■□□□□ 0.34
RNF40-208ENST00000565995 CCDC93Q567U6 631 aa17.16■□□□□ 0.34
RNF40-208ENST00000565995 PHACTR3Q96KR7 559 aa17.16■□□□□ 0.34
RNF40-208ENST00000565995 KDM3BQ7LBC6 1761 aa17.15■□□□□ 0.34
RNF40-208ENST00000565995 TMEM88BA6NKF7 163 aa17.15■□□□□ 0.34
RNF40-208ENST00000565995 U2SURPO15042 1029 aaKnown RBP17.15■□□□□ 0.34
RNF40-208ENST00000565995 NBPF5PQ86XG9 351 aaPredicted RBP17.15■□□□□ 0.34
RNF40-208ENST00000565995 ZNF652Q9Y2D9 606 aa17.15■□□□□ 0.34
RNF40-208ENST00000565995 SNED1Q8TER0 1413 aa17.14■□□□□ 0.33
RNF40-208ENST00000565995 NPHP1O15259 732 aa17.14■□□□□ 0.33
RNF40-208ENST00000565995 TPTE2Q6XPS3 522 aa17.14■□□□□ 0.33
RNF40-208ENST00000565995 RTKN2Q8IZC4 609 aa17.14■□□□□ 0.33
RNF40-208ENST00000565995 RSPH6AQ9H0K4 717 aa17.14■□□□□ 0.33
RNF40-208ENST00000565995 THSD7BQ9C0I4 1608 aa17.14■□□□□ 0.33
RNF40-208ENST00000565995 FZD9O00144 591 aa17.13■□□□□ 0.33
RNF40-208ENST00000565995 SNRPA1P09661 255 aaKnown RBP17.13■□□□□ 0.33
RNF40-208ENST00000565995 VEGFBP49765 207 aa17.13■□□□□ 0.33
RNF40-208ENST00000565995 WBP1LQ9NX94 342 aa17.13■□□□□ 0.33
RNF40-208ENST00000565995 HACL1Q9UJ83 578 aa17.13■□□□□ 0.33
RNF40-208ENST00000565995 LTBP1Q14766 1721 aa17.13■□□□□ 0.33
RNF40-208ENST00000565995 PRAMEF22A3QJZ6 481 aa17.12■□□□□ 0.33
RNF40-208ENST00000565995 ALDH1B1P30837 517 aa17.12■□□□□ 0.33
RNF40-208ENST00000565995 CTCFP49711 727 aaPredicted RBP17.12■□□□□ 0.33
RNF40-208ENST00000565995 PNMA8AQ86V59 439 aaPredicted RBP17.12■□□□□ 0.33
RNF40-208ENST00000565995 RASSF10A6NK89 507 aa17.11■□□□□ 0.33
RNF40-208ENST00000565995 NBPF26B4DH59 902 aa17.11■□□□□ 0.33
RNF40-208ENST00000565995 NBPF10Q6P3W6 841 aaKnown RBP17.11■□□□□ 0.33
RNF40-208ENST00000565995 NBPF15Q8N660 670 aa17.11■□□□□ 0.33
RNF40-208ENST00000565995 ZNF541Q9H0D2 1346 aa17.11■□□□□ 0.33
RNF40-208ENST00000565995 HTATSF1O43719 755 aaKnown RBP17.1■□□□□ 0.33
RNF40-208ENST00000565995 PRKAR2BP31323 418 aa17.1■□□□□ 0.33
RNF40-208ENST00000565995 EPHX2P34913 555 aa17.1■□□□□ 0.33
RNF40-208ENST00000565995 PIP4K2AP48426 406 aaPredicted RBP17.1■□□□□ 0.33
RNF40-208ENST00000565995 GPC2Q8N158 579 aa17.1■□□□□ 0.33
RNF40-208ENST00000565995 PSMD1Q99460 953 aa17.1■□□□□ 0.33
RNF40-208ENST00000565995 ZNF277Q9NRM2 450 aaPredicted RBP17.1■□□□□ 0.33
RNF40-208ENST00000565995 NIP7Q9Y221 180 aaKnown RBP eCLIP17.1■□□□□ 0.33
RNF40-208ENST00000565995 IARSP41252 1262 aaKnown RBP17.09■□□□□ 0.33
RNF40-208ENST00000565995 CRY2Q49AN0 593 aa17.09■□□□□ 0.33
RNF40-208ENST00000565995 ANKRD36CQ5JPF3 1778 aa17.08■□□□□ 0.33
RNF40-208ENST00000565995 RIC1Q4ADV7 1423 aa17.08■□□□□ 0.32
RNF40-208ENST00000565995 OLFM4Q6UX06 510 aa17.08■□□□□ 0.32
RNF40-208ENST00000565995 CNTROBQ8N137 903 aa17.08■□□□□ 0.32
RNF40-208ENST00000565995 SYNE4Q8N205 404 aa17.08■□□□□ 0.32
RNF40-208ENST00000565995 AIDAQ96BJ3 306 aa17.08■□□□□ 0.32
RNF40-208ENST00000565995 LAMB2P55268 1798 aa17.07■□□□□ 0.32
RNF40-208ENST00000565995 COL4A5P29400 1685 aa17.07■□□□□ 0.32
RNF40-208ENST00000565995 HLFQ16534 295 aa17.07■□□□□ 0.32
RNF40-208ENST00000565995 DEFB115Q30KQ5 88 aa17.07■□□□□ 0.32
RNF40-208ENST00000565995 GRIPAP1Q4V328 841 aa17.07■□□□□ 0.32
RNF40-208ENST00000565995 EAPPQ56P03 285 aaPredicted RBP17.07■□□□□ 0.32
RNF40-208ENST00000565995 CC2D2BQ6DHV5 1058 aa17.07■□□□□ 0.32
RNF40-208ENST00000565995 MCM10Q7L590 875 aa17.06■□□□□ 0.32
RNF40-208ENST00000565995 RTF1Q92541 710 aaKnown RBP17.06■□□□□ 0.32
RNF40-208ENST00000565995 CFAP53Q96M91 514 aa17.06■□□□□ 0.32
RNF40-208ENST00000565995 CLEC11AQ9Y240 323 aa17.06■□□□□ 0.32
RNF40-208ENST00000565995 RNF123Q5XPI4 1314 aa17.05■□□□□ 0.32
RNF40-208ENST00000565995 ERVV-1B6SEH8 477 aa17.05■□□□□ 0.32
RNF40-208ENST00000565995 HOXA10P31260 410 aaPredicted RBP17.05■□□□□ 0.32
RNF40-208ENST00000565995 LBX1P52954 281 aa17.05■□□□□ 0.32
RNF40-208ENST00000565995 CCER1Q8TC90 406 aaPredicted RBP17.05■□□□□ 0.32
RNF40-208ENST00000565995 NUDCQ9Y266 331 aa17.05■□□□□ 0.32
RNF40-208ENST00000565995 POLR2AP24928 1970 aaKnown RBP17.05■□□□□ 0.32
RNF40-208ENST00000565995 IBTKQ9P2D0 1353 aaPredicted RBP17.04■□□□□ 0.32
RNF40-208ENST00000565995 WDR33Q9C0J8 1336 aaKnown RBP17.04■□□□□ 0.32
RNF40-208ENST00000565995 MAP2K1Q02750 393 aaPredicted RBP17.04■□□□□ 0.32
RNF40-208ENST00000565995 TAF7Q15545 349 aaPredicted RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 12.6 ms