RNA–Protein interactions for RNA: ENST00000565228.1

VPS35-206, Transcript of VPS35, retromer complex component, humanhuman

TSL 3

Gene VPS35, Length 487 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-206ENST00000565228 ANKRD31Q8N7Z5 1873 aa12.02□□□□□ -0.48
VPS35-206ENST00000565228 TCERG1O14776 1098 aaKnown RBP12.02□□□□□ -0.49
VPS35-206ENST00000565228 DZIP3Q86Y13 1208 aaKnown RBP12.02□□□□□ -0.49
VPS35-206ENST00000565228 CHPF2Q9P2E5 772 aa12.02□□□□□ -0.49
VPS35-206ENST00000565228 IL16Q14005 1332 aa12.02□□□□□ -0.49
VPS35-206ENST00000565228 N4BP2Q86UW6 1770 aaPredicted RBP12.02□□□□□ -0.49
VPS35-206ENST00000565228 CCDC24Q8N4L8 307 aa12.01□□□□□ -0.49
VPS35-206ENST00000565228 EXOSC9Q06265 439 aaKnown RBP12□□□□□ -0.49
VPS35-206ENST00000565228 NLGN1Q8N2Q7 840 aa12□□□□□ -0.49
VPS35-206ENST00000565228 PHAXQ9H814 394 aaKnown RBP12□□□□□ -0.49
VPS35-206ENST00000565228 C10orf71Q711Q0 1435 aa12□□□□□ -0.49
VPS35-206ENST00000565228 ZPR1O75312 459 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 VAMP4O75379 141 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 HOXB7P09629 217 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 POLD1P28340 1107 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 HDGFL1Q5TGJ6 251 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 BICDL1Q6ZP65 573 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 G2E3Q7L622 706 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 TRMT2AQ8IZ69 625 aaKnown RBP11.99□□□□□ -0.49
VPS35-206ENST00000565228 XAGE3Q8WTP9 111 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 ZNF428Q96B54 188 aa11.99□□□□□ -0.49
VPS35-206ENST00000565228 BRCA1P38398 1863 aaKnown RBP11.99□□□□□ -0.49
VPS35-206ENST00000565228 PXDNLA1KZ92 1463 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 ERBB4Q15303 1308 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 MAP3K15Q6ZN16 1313 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 UBN2Q6ZU65 1347 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 KCNA3P22001 575 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 HMGB2P26583 209 aaKnown RBP11.98□□□□□ -0.49
VPS35-206ENST00000565228 SLFN5Q08AF3 891 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 COPS6Q7L5N1 327 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 ZBTB3Q9H5J0 574 aa11.98□□□□□ -0.49
VPS35-206ENST00000565228 DDX21Q9NR30 783 aaKnown RBP eCLIP11.98□□□□□ -0.49
VPS35-206ENST00000565228 PPP1R1BQ9UD71 204 aaPredicted RBP11.98□□□□□ -0.49
VPS35-206ENST00000565228 COL11A2P13942 1736 aaPredicted RBP11.97□□□□□ -0.49
VPS35-206ENST00000565228 A0A087WZG4 1122 aa11.97□□□□□ -0.49
VPS35-206ENST00000565228 SERPINB2P05120 415 aa11.97□□□□□ -0.49
VPS35-206ENST00000565228 CALD1Q05682 793 aaKnown RBP11.97□□□□□ -0.49
VPS35-206ENST00000565228 AIMP1Q12904 312 aaKnown RBP11.97□□□□□ -0.49
VPS35-206ENST00000565228 KLHL34Q8N239 644 aa11.97□□□□□ -0.49
VPS35-206ENST00000565228 ZNF784Q8NCA9 323 aaPredicted RBP11.97□□□□□ -0.49
VPS35-206ENST00000565228 WWC3Q9ULE0 1092 aa11.97□□□□□ -0.49
VPS35-206ENST00000565228 ANKRD36CQ5JPF3 1778 aa11.97□□□□□ -0.49
VPS35-206ENST00000565228 ARFGEF2Q9Y6D5 1785 aa11.97□□□□□ -0.49
VPS35-206ENST00000565228 TNRC6CQ9HCJ0 1690 aaKnown RBP11.97□□□□□ -0.49
VPS35-206ENST00000565228 YBX3P16989 372 aaKnown RBP eCLIP11.96□□□□□ -0.491e-6■■□□□ 11.8
VPS35-206ENST00000565228 TWISTNBQ3B726 338 aaPredicted RBP11.96□□□□□ -0.49
VPS35-206ENST00000565228 CHRNA5P30532 468 aa11.95□□□□□ -0.5
VPS35-206ENST00000565228 PRR5LQ6MZQ0 368 aa11.95□□□□□ -0.5
VPS35-206ENST00000565228 SLC51AQ86UW1 340 aa11.95□□□□□ -0.5
VPS35-206ENST00000565228 ZNF34Q8IZ26 560 aa11.95□□□□□ -0.5
VPS35-206ENST00000565228 SYNE4Q8N205 404 aa11.95□□□□□ -0.5
VPS35-206ENST00000565228 ABCC12Q96J65 1359 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 A0A0G2JLW4 131 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 ERVV-1B6SEH8 477 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 DPEP1P16444 411 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 GPTP24298 496 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 SUSD4Q5VX71 490 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 GIGYF2Q6Y7W6 1299 aaKnown RBP11.94□□□□□ -0.5
VPS35-206ENST00000565228 C3orf67Q6ZVT6 689 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 CD2APQ9Y5K6 639 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 PARP3Q9Y6F1 533 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 ATP10DQ9P241 1426 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 COL4A1P02462 1669 aa11.94□□□□□ -0.5
VPS35-206ENST00000565228 ADCY9O60503 1353 aa11.93□□□□□ -0.5
VPS35-206ENST00000565228 DLEC1Q9Y238 1755 aa11.93□□□□□ -0.5
VPS35-206ENST00000565228 FAM177BA6PVY3 158 aa11.93□□□□□ -0.5
VPS35-206ENST00000565228 GOLGA2Q08379 1002 aa11.93□□□□□ -0.5
VPS35-206ENST00000565228 CLEC4GQ6UXB4 293 aa11.93□□□□□ -0.5
VPS35-206ENST00000565228 DBF4Q9UBU7 674 aaPredicted RBP11.93□□□□□ -0.5
VPS35-206ENST00000565228 NIP7Q9Y221 180 aaKnown RBP eCLIP11.93□□□□□ -0.5
VPS35-206ENST00000565228 C1QTNF8P60827 252 aa11.92□□□□□ -0.5
VPS35-206ENST00000565228 NUTM1Q86Y26 1132 aa11.92□□□□□ -0.5
VPS35-206ENST00000565228 CACNA1FO60840 1977 aa11.92□□□□□ -0.5
VPS35-206ENST00000565228 LAMB2P55268 1798 aa11.92□□□□□ -0.5
VPS35-206ENST00000565228 ATP5J2-PTCD1G3V325 749 aa11.91□□□□□ -0.5
VPS35-206ENST00000565228 RGL2O15211 777 aa11.91□□□□□ -0.5
VPS35-206ENST00000565228 NTSR2O95665 410 aa11.91□□□□□ -0.5
VPS35-206ENST00000565228 HNRNPUQ00839 825 aaKnown RBP eCLIP11.91□□□□□ -0.5
VPS35-206ENST00000565228 SETDB2Q96T68 719 aa11.91□□□□□ -0.5
VPS35-206ENST00000565228 ISCA1Q9BUE6 129 aa11.91□□□□□ -0.5
VPS35-206ENST00000565228 TAF1P21675 1872 aa11.91□□□□□ -0.5
VPS35-206ENST00000565228 E9PSI1 815 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 SLC4A2P04920 1241 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 TCIRG1Q13488 830 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 ERFEQ4G0M1 354 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 CCDC30Q5VVM6 783 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 KIF6Q6ZMV9 814 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 ANKRD13DQ6ZTN6 518 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 NLRP10Q86W26 655 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 DDX60Q8IY21 1712 aaKnown RBP11.9□□□□□ -0.5
VPS35-206ENST00000565228 PLBD2Q8NHP8 589 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 MYH16Q9H6N6 1097 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 HYPKQ9NX55 129 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 SLX4Q8IY92 1834 aa11.9□□□□□ -0.5
VPS35-206ENST00000565228 CACNA1SQ13698 1873 aa11.89□□□□□ -0.51
VPS35-206ENST00000565228 IGKV5-2P06315 115 aa11.89□□□□□ -0.51
VPS35-206ENST00000565228 MRPL50Q8N5N7 158 aaKnown RBP11.89□□□□□ -0.51
VPS35-206ENST00000565228 JARID2Q92833 1246 aaPredicted RBP11.89□□□□□ -0.51
VPS35-206ENST00000565228 KLRG2A4D1S0 409 aaPredicted RBP11.88□□□□□ -0.51
VPS35-206ENST00000565228 PI4KAP2A4QPH2 592 aa11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 136.1 ms