RNA–Protein interactions for RNA: ENST00000564845.5

CHD9-213, Transcript of chromodomain helicase DNA binding protein 9, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CHD9, Length 11,504 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD9-213ENST00000564845 SRGAP3O43295 1099 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 FCHSD2O94868 740 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 CEBPZQ03701 1054 aaKnown RBP4.06□□□□□ -1.76
CHD9-213ENST00000564845 PTPN21Q16825 1174 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 KLHL34Q8N239 644 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 BTG4Q9NY30 223 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 FLIIQ13045 1269 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 ASAP1Q9ULH1 1129 aa4.06□□□□□ -1.76
CHD9-213ENST00000564845 AK9Q5TCS8 1911 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 SURF6O75683 361 aaKnown RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 EPHA10Q5JZY3 1008 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 BOLA2Q9H3K6 86 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 DENND2AQ9ULE3 1009 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 MYO6Q9UM54 1294 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 RPGRIP1LQ68CZ1 1315 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 CCDC70Q6NSX1 233 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 AMOTL1Q8IY63 956 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 SIRT1Q96EB6 747 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 NEUROD6Q96NK8 337 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 PXDNQ92626 1479 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 DDX11Q96FC9 970 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 RXRAP19793 462 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 GAS2L2Q8NHY3 880 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 NAP1L5Q96NT1 182 aaPredicted RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 UIMC1Q96RL1 719 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 ZNF219Q9P2Y4 722 aaPredicted RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 C22orf23Q9BZE7 217 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 LMTK3Q96Q04 1460 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 WDFY4Q6ZS81 3184 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 SLURP2P0DP57 97 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 RBM26Q5T8P6 1007 aaKnown RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 COPS6Q7L5N1 327 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 FAM89AQ96GI7 184 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 GPR101Q96P66 508 aaPredicted RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 CDK12Q9NYV4 1490 aaPredicted RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 CRB1P82279 1406 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 CACNA1FO60840 1977 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 GOLGA6L4A6NEF3 574 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 ANO2Q9NQ90 1003 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 NT5C2P49902 561 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 SDSP20132 328 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 TUBB4BP68371 445 aa4.05□□□□□ -1.76
CHD9-213ENST00000564845 ERCC4Q92889 916 aaPredicted RBP4.05□□□□□ -1.76
CHD9-213ENST00000564845 PPP4R3BQ5MIZ7 849 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 SBNO1A3KN83 1393 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 NSD2O96028 1365 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 SSFA2P28290 1259 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 TIMM10P62072 90 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 EVX2Q03828 476 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 CCDC82Q8N4S0 544 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 PIBF1Q8WXW3 757 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 FAM227BQ96M60 508 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 GJB4Q9NTQ9 266 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 TAF5LO75529 589 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 GUCY1B3Q02153 619 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 TMED8Q6PL24 325 aaPredicted RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 UBE3BQ7Z3V4 1068 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 LRP10Q7Z4F1 713 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 NECAB1Q8N987 351 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 ZNF496Q96IT1 587 aaPredicted RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 NOL10Q9BSC4 688 aaKnown RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 PTCH1Q13635 1447 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 HSP90AB1P08238 724 aaKnown RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 CALRP27797 417 aaKnown RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 CCDC144CPQ8IYA2 1237 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 PUS3Q9BZE2 481 aaKnown RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 C9orf78Q9NZ63 289 aaPredicted RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 ADAMTSL3P82987 1691 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 UBE2Q2LH0YL09 131 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 NKX2-3Q8TAU0 364 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 RWDD1Q9H446 243 aaPredicted RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 VIRMAQ69YN4 1812 aaKnown RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 CEP85Q6P2H3 762 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 PPP1R42Q7Z4L9 355 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 C8orf37Q96NL8 207 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 BICC1Q9H694 974 aaKnown RBP4.04□□□□□ -1.76
CHD9-213ENST00000564845 MCTP1Q6DN14 999 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 RIC3Q7Z5B4 369 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 TMEM94Q12767 1356 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 KIAA0232Q92628 1395 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 C1orf141Q5JVX7 400 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 AMIGO3Q86WK7 504 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 RNF214Q8ND24 703 aa4.04□□□□□ -1.76
CHD9-213ENST00000564845 TULP1O00294 542 aaPredicted RBP4.03□□□□□ -1.76
CHD9-213ENST00000564845 DDX46Q7L014 1031 aaKnown RBP4.03□□□□□ -1.76
CHD9-213ENST00000564845 USP6P35125 1406 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 FMNL3Q8IVF7 1028 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 PLEKHM2Q8IWE5 1019 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 GTPBP4Q9BZE4 634 aaKnown RBP4.03□□□□□ -1.76
CHD9-213ENST00000564845 ECM2O94769 699 aaPredicted RBP4.03□□□□□ -1.76
CHD9-213ENST00000564845 CDR1P51861 262 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 GPS2Q13227 327 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 SKOR2Q2VWA4 1001 aaPredicted RBP4.03□□□□□ -1.76
CHD9-213ENST00000564845 FERMT3Q86UX7 667 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 CMTR1Q8N1G2 835 aaKnown RBP4.03□□□□□ -1.76
CHD9-213ENST00000564845 DDX19BQ9UMR2 479 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 ADCK5Q3MIX3 580 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 PRDM11Q9NQV5 511 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 GNAI1P63096 354 aa4.03□□□□□ -1.76
CHD9-213ENST00000564845 USP44Q9H0E7 712 aa4.03□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms