RNA–Protein interactions for RNA: ENST00000562680.5

TCF4-216, Transcript of transcription factor 4, humanhuman

TSL 1 (best)

Gene TCF4, Length 5,733 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-216ENST00000562680 ATP6V1AP38606 617 aa9.03□□□□□ -0.96
TCF4-216ENST00000562680 NOL8Q76FK4 1167 aaKnown RBP9.03□□□□□ -0.96
TCF4-216ENST00000562680 SMC3Q9UQE7 1217 aa9.03□□□□□ -0.96
TCF4-216ENST00000562680 SLC5A1P13866 664 aa9.03□□□□□ -0.96
TCF4-216ENST00000562680 IRX3P78415 501 aaPredicted RBP9.03□□□□□ -0.96
TCF4-216ENST00000562680 IPO4Q8TEX9 1081 aaKnown RBP9.03□□□□□ -0.96
TCF4-216ENST00000562680 MEIS3Q99687 375 aa9.03□□□□□ -0.96
TCF4-216ENST00000562680 MYO3AQ8NEV4 1616 aa9.03□□□□□ -0.96
TCF4-216ENST00000562680 ZNF526Q8TF50 670 aaPredicted RBP9.03□□□□□ -0.96
TCF4-216ENST00000562680 DHX16O60231 1041 aaKnown RBP9.02□□□□□ -0.96
TCF4-216ENST00000562680 EIF4A1P60842 406 aaKnown RBP9.02□□□□□ -0.96
TCF4-216ENST00000562680 NUCB1Q02818 461 aa9.02□□□□□ -0.96
TCF4-216ENST00000562680 MTERF4Q7Z6M4 381 aaKnown RBP9.02□□□□□ -0.96
TCF4-216ENST00000562680 NYXQ9GZU5 481 aa9.02□□□□□ -0.96
TCF4-216ENST00000562680 SPINK5Q9NQ38 1064 aaPredicted RBP9.02□□□□□ -0.96
TCF4-216ENST00000562680 USP32Q8NFA0 1604 aa9.02□□□□□ -0.96
TCF4-216ENST00000562680 TPM2P07951 284 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 PLBD2Q8NHP8 589 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 CCDC152Q4G0S7 254 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 SMC5Q8IY18 1101 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 PARP10Q53GL7 1025 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 CAVIN4Q5BKX8 364 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 TAOK2Q9UL54 1235 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 IL15P40933 162 aaPredicted RBP9.02□□□□□ -0.97
TCF4-216ENST00000562680 DCTPP1Q9H773 170 aa9.02□□□□□ -0.97
TCF4-216ENST00000562680 CPS1P31327 1500 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 RFC4P35249 363 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 SF3A1Q15459 793 aaKnown RBP9.01□□□□□ -0.97
TCF4-216ENST00000562680 CYP46A1Q9Y6A2 500 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 MROH2AA6NES4 1674 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 EVI5LQ96CN4 794 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 RHPN1Q8TCX5 695 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 DDX17Q92841 729 aaKnown RBP9.01□□□□□ -0.97
TCF4-216ENST00000562680 CWC22Q9HCG8 908 aaKnown RBP9.01□□□□□ -0.97
TCF4-216ENST00000562680 THRAP3Q9Y2W1 955 aaKnown RBP9.01□□□□□ -0.97
TCF4-216ENST00000562680 ANXA1P04083 346 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 UQCRFS1P1P0C7P4 283 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 TTF1Q15361 905 aaPredicted RBP9.01□□□□□ -0.97
TCF4-216ENST00000562680 NFXL1Q6ZNB6 911 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 IL17REQ8NFR9 667 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 PCDHB15Q9Y5E8 787 aa9.01□□□□□ -0.97
TCF4-216ENST00000562680 ZSCAN31Q96LW9 406 aaPredicted RBP9□□□□□ -0.97
TCF4-216ENST00000562680 LGR6Q9HBX8 967 aa9□□□□□ -0.97
TCF4-216ENST00000562680 NEK4P51957 841 aa9□□□□□ -0.97
TCF4-216ENST00000562680 CCDC191Q8NCU4 936 aa9□□□□□ -0.97
TCF4-216ENST00000562680 METTL22Q9BUU2 404 aaPredicted RBP9□□□□□ -0.97
TCF4-216ENST00000562680 ATP5J2-PTCD1G3V325 749 aa9□□□□□ -0.97
TCF4-216ENST00000562680 SAFBQ15424 915 aaKnown RBP eCLIP9□□□□□ -0.97
TCF4-216ENST00000562680 BICDL1Q6ZP65 573 aa9□□□□□ -0.97
TCF4-216ENST00000562680 DZIP3Q86Y13 1208 aaKnown RBP9□□□□□ -0.97
TCF4-216ENST00000562680 FBXW7Q969H0 707 aa9□□□□□ -0.97
TCF4-216ENST00000562680 LDHAL6AQ6ZMR3 332 aa9□□□□□ -0.97
TCF4-216ENST00000562680 ZNF853P0CG23 659 aa9□□□□□ -0.97
TCF4-216ENST00000562680 GPTP24298 496 aa9□□□□□ -0.97
TCF4-216ENST00000562680 MSNP26038 577 aaKnown RBP9□□□□□ -0.97
TCF4-216ENST00000562680 CEP85Q6P2H3 762 aa9□□□□□ -0.97
TCF4-216ENST00000562680 NUTM1Q86Y26 1132 aa9□□□□□ -0.97
TCF4-216ENST00000562680 RPGRQ92834 1020 aaKnown RBP9□□□□□ -0.97
TCF4-216ENST00000562680 CIZ1Q9ULV3 898 aaPredicted RBP9□□□□□ -0.97
TCF4-216ENST00000562680 RTCBQ9Y3I0 505 aaKnown RBP9□□□□□ -0.97
TCF4-216ENST00000562680 OVOS2A0A0J9YW53 1432 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 OVOS2Q6IE36 1432 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 XBP1P17861 261 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 DDX46Q7L014 1031 aaKnown RBP8.99□□□□□ -0.97
TCF4-216ENST00000562680 USP21Q9UK80 565 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 TTC41PQ6P2S7 1318 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 ZBTB7BO15156 539 aaPredicted RBP8.99□□□□□ -0.97
TCF4-216ENST00000562680 TPM4P67936 248 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 FKBP4Q02790 459 aaKnown RBP eCLIP8.99□□□□□ -0.97
TCF4-216ENST00000562680 MAP3K12Q12852 859 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 UTP14AQ9BVJ6 771 aaKnown RBP8.99□□□□□ -0.97
TCF4-216ENST00000562680 RLBP1P12271 317 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 ST5P78524 1137 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 KRT24Q2M2I5 525 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 TTC22Q5TAA0 569 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 SETDB2Q96T68 719 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 CLGNO14967 610 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 GIGYF1O75420 1035 aaPredicted RBP8.99□□□□□ -0.97
TCF4-216ENST00000562680 ABCC4O15439 1325 aa8.99□□□□□ -0.97
TCF4-216ENST00000562680 BLOC1S2Q6QNY1 142 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 NBPF5PQ86XG9 351 aaPredicted RBP8.98□□□□□ -0.97
TCF4-216ENST00000562680 SLF2Q8IX21 1173 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 ACSBG1Q96GR2 724 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 ZFYP08048 801 aaPredicted RBP8.98□□□□□ -0.97
TCF4-216ENST00000562680 ZNF496Q96IT1 587 aaPredicted RBP8.98□□□□□ -0.97
TCF4-216ENST00000562680 FOXD4L1Q9NU39 408 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 IGHDP01880 384 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 NLRP3Q96P20 1036 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 LRP2BPQ9P2M1 347 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 U3KPZ7 1027 aaPredicted RBP8.98□□□□□ -0.97
TCF4-216ENST00000562680 TRPC5Q9UL62 973 aaPredicted RBP8.98□□□□□ -0.97
TCF4-216ENST00000562680 TPTE2Q6XPS3 522 aa8.98□□□□□ -0.97
TCF4-216ENST00000562680 LMBR1LQ6UX01 489 aa8.97□□□□□ -0.97
TCF4-216ENST00000562680 PLCD4Q9BRC7 762 aa8.97□□□□□ -0.97
TCF4-216ENST00000562680 CCDC87Q9NVE4 849 aa8.97□□□□□ -0.97
TCF4-216ENST00000562680 ZNF287Q9HBT7 754 aa8.97□□□□□ -0.97
TCF4-216ENST00000562680 AOX1Q06278 1338 aa8.97□□□□□ -0.97
TCF4-216ENST00000562680 K7ELQ4 463 aaPredicted RBP8.97□□□□□ -0.97
TCF4-216ENST00000562680 SMARCA5O60264 1052 aaPredicted RBP8.97□□□□□ -0.97
TCF4-216ENST00000562680 BRMS1Q9HCU9 246 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms