RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PDE6BP35913 854 aa15.39■□□□□ 0.05
LDLR-212ENST00000560467 IL6STP40189 918 aaPredicted RBP15.39■□□□□ 0.05
LDLR-212ENST00000560467 ERFEQ4G0M1 354 aa15.39■□□□□ 0.05
LDLR-212ENST00000560467 TNS4Q8IZW8 715 aa15.39■□□□□ 0.05
LDLR-212ENST00000560467 CNBD1Q8NA66 436 aa15.39■□□□□ 0.05
LDLR-212ENST00000560467 FMNL2Q96PY5 1086 aa15.39■□□□□ 0.05
LDLR-212ENST00000560467 SCN7AQ01118 1682 aa15.38■□□□□ 0.05
LDLR-212ENST00000560467 TIAM2Q8IVF5 1701 aa15.38■□□□□ 0.05
LDLR-212ENST00000560467 HSPA1AP0DMV8 641 aaKnown RBP15.38■□□□□ 0.05
LDLR-212ENST00000560467 HSPA1BP0DMV9 641 aaKnown RBP15.38■□□□□ 0.05
LDLR-212ENST00000560467 PIP4K2AP48426 406 aaPredicted RBP15.38■□□□□ 0.05
LDLR-212ENST00000560467 TEX13AQ9BXU3 409 aaPredicted RBP15.38■□□□□ 0.05
LDLR-212ENST00000560467 COL11A2P13942 1736 aaPredicted RBP15.37■□□□□ 0.05
LDLR-212ENST00000560467 NPHP1O15259 732 aa15.37■□□□□ 0.05
LDLR-212ENST00000560467 DPY19L2Q6NUT2 758 aa15.37■□□□□ 0.05
LDLR-212ENST00000560467 PRPF40BQ6NWY9 871 aaKnown RBP15.37■□□□□ 0.05
LDLR-212ENST00000560467 PHACTR3Q96KR7 559 aa15.37■□□□□ 0.05
LDLR-212ENST00000560467 SETDB2Q96T68 719 aa15.37■□□□□ 0.05
LDLR-212ENST00000560467 TAOK3Q9H2K8 898 aa15.37■□□□□ 0.05
LDLR-212ENST00000560467 PDZRN3Q9UPQ7 1066 aa15.37■□□□□ 0.05
LDLR-212ENST00000560467 CEMIPQ8WUJ3 1361 aa15.36■□□□□ 0.05
LDLR-212ENST00000560467 ANKRD31Q8N7Z5 1873 aa15.36■□□□□ 0.05
LDLR-212ENST00000560467 POTEIP0CG38 1075 aa15.36■□□□□ 0.05
LDLR-212ENST00000560467 POTEJP0CG39 1038 aa15.36■□□□□ 0.05
LDLR-212ENST00000560467 CCDC146Q8IYE0 955 aa15.36■□□□□ 0.05
LDLR-212ENST00000560467 LTBP3Q9NS15 1303 aa15.36■□□□□ 0.05
LDLR-212ENST00000560467 PRAMEF22A3QJZ6 481 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 BTBD11A6QL63 1104 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 DDNO94850 711 aaPredicted RBP15.35■□□□□ 0.05
LDLR-212ENST00000560467 SRGNP10124 158 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 PRKAR2BP31323 418 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 ST5P78524 1137 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 STYK1Q6J9G0 422 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 DZIP3Q86Y13 1208 aaKnown RBP15.35■□□□□ 0.05
LDLR-212ENST00000560467 CNKSR1Q969H4 720 aa15.35■□□□□ 0.05
LDLR-212ENST00000560467 NPM2Q86SE8 214 aaKnown RBP15.34■□□□□ 0.05
LDLR-212ENST00000560467 USP16Q9Y5T5 823 aa15.34■□□□□ 0.05
LDLR-212ENST00000560467 ZBED9Q6R2W3 1325 aa15.34■□□□□ 0.05
LDLR-212ENST00000560467 VIRMAQ69YN4 1812 aaKnown RBP15.33■□□□□ 0.05
LDLR-212ENST00000560467 APAF1O14727 1248 aa15.33■□□□□ 0.04
LDLR-212ENST00000560467 CHADLQ6NUI6 762 aa15.33■□□□□ 0.04
LDLR-212ENST00000560467 MASTLQ96GX5 879 aa15.33■□□□□ 0.04
LDLR-212ENST00000560467 RSPH6AQ9H0K4 717 aa15.33■□□□□ 0.04
LDLR-212ENST00000560467 MKRN1Q9UHC7 482 aaKnown RBP15.33■□□□□ 0.04
LDLR-212ENST00000560467 LMOD3Q0VAK6 560 aa15.32■□□□□ 0.04
LDLR-212ENST00000560467 NCBP3Q53F19 620 aaKnown RBP15.32■□□□□ 0.04
LDLR-212ENST00000560467 NBPF5PQ86XG9 351 aaPredicted RBP15.32■□□□□ 0.04
LDLR-212ENST00000560467 SALL2Q9Y467 1007 aaPredicted RBP15.32■□□□□ 0.04
LDLR-212ENST00000560467 SOGA3Q5TF21 947 aa15.31■□□□□ 0.04
LDLR-212ENST00000560467 MCM10Q7L590 875 aa15.31■□□□□ 0.04
LDLR-212ENST00000560467 C7orf43Q8WVR3 580 aa15.31■□□□□ 0.04
LDLR-212ENST00000560467 CREBZFQ9NS37 354 aa15.31■□□□□ 0.04
LDLR-212ENST00000560467 SIPA1L3O60292 1781 aaPredicted RBP15.31■□□□□ 0.04
LDLR-212ENST00000560467 CALD1Q05682 793 aaKnown RBP15.3■□□□□ 0.04
LDLR-212ENST00000560467 NEUROD2Q15784 382 aa15.3■□□□□ 0.04
LDLR-212ENST00000560467 OLFM4Q6UX06 510 aa15.3■□□□□ 0.04
LDLR-212ENST00000560467 FER1L6Q2WGJ9 1857 aa15.29■□□□□ 0.04
LDLR-212ENST00000560467 SLX4Q8IY92 1834 aa15.29■□□□□ 0.04
LDLR-212ENST00000560467 ZNF541Q9H0D2 1346 aa15.29■□□□□ 0.04
LDLR-212ENST00000560467 NBPF26B4DH59 902 aa15.29■□□□□ 0.04
LDLR-212ENST00000560467 SNRPA1P09661 255 aaKnown RBP15.29■□□□□ 0.04
LDLR-212ENST00000560467 CCDC93Q567U6 631 aa15.29■□□□□ 0.04
LDLR-212ENST00000560467 NBPF10Q6P3W6 841 aaKnown RBP15.29■□□□□ 0.04
LDLR-212ENST00000560467 NBPF15Q8N660 670 aa15.29■□□□□ 0.04
LDLR-212ENST00000560467 ZNF277Q9NRM2 450 aaPredicted RBP15.29■□□□□ 0.04
LDLR-212ENST00000560467 FAM177BA6PVY3 158 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 NPR1P16066 1061 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 RIPK4P57078 832 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 DCTN1Q14203 1278 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 CLEC4GQ6UXB4 293 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 L3MBTL3Q96JM7 780 aaPredicted RBP15.28■□□□□ 0.04
LDLR-212ENST00000560467 PLEKHF1Q96S99 279 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 TAF1DQ9H5J8 278 aaPredicted RBP15.28■□□□□ 0.04
LDLR-212ENST00000560467 NIP7Q9Y221 180 aaKnown RBP eCLIP15.28■□□□□ 0.04
LDLR-212ENST00000560467 ZNF652Q9Y2D9 606 aa15.28■□□□□ 0.04
LDLR-212ENST00000560467 CCDC88AQ3V6T2 1871 aa15.27■□□□□ 0.04
LDLR-212ENST00000560467 BCORQ6W2J9 1755 aa15.27■□□□□ 0.04
LDLR-212ENST00000560467 PASKQ96RG2 1323 aa15.27■□□□□ 0.04
LDLR-212ENST00000560467 KLRG2A4D1S0 409 aaPredicted RBP15.27■□□□□ 0.04
LDLR-212ENST00000560467 IQCA1LA6NCM1 817 aa15.27■□□□□ 0.04
LDLR-212ENST00000560467 TMPOP42166 694 aaKnown RBP15.27■□□□□ 0.04
LDLR-212ENST00000560467 NFE2L2Q16236 605 aa15.27■□□□□ 0.04
LDLR-212ENST00000560467 LDHDQ86WU2 507 aa15.27■□□□□ 0.04
LDLR-212ENST00000560467 RTF1Q92541 710 aaKnown RBP15.27■□□□□ 0.04
LDLR-212ENST00000560467 CNTNAP1P78357 1384 aa15.26■□□□□ 0.03
LDLR-212ENST00000560467 FKBP4Q02790 459 aaKnown RBP eCLIP15.26■□□□□ 0.03
LDLR-212ENST00000560467 CCDC27Q2M243 656 aa15.26■□□□□ 0.03
LDLR-212ENST00000560467 GOLGA2Q08379 1002 aa15.25■□□□□ 0.03
LDLR-212ENST00000560467 HLFQ16534 295 aa15.25■□□□□ 0.03
LDLR-212ENST00000560467 EAPPQ56P03 285 aaPredicted RBP15.25■□□□□ 0.03
LDLR-212ENST00000560467 WDR63Q8IWG1 891 aa15.25■□□□□ 0.03
LDLR-212ENST00000560467 RRP7AQ9Y3A4 280 aaKnown RBP15.25■□□□□ 0.03
LDLR-212ENST00000560467 FOXN1O15353 648 aa15.24■□□□□ 0.03
LDLR-212ENST00000560467 TPTE2Q6XPS3 522 aa15.24■□□□□ 0.03
LDLR-212ENST00000560467 MIS18AQ9NYP9 233 aa15.24■□□□□ 0.03
LDLR-212ENST00000560467 ABCC12Q96J65 1359 aa15.24■□□□□ 0.03
LDLR-212ENST00000560467 DICER1Q9UPY3 1922 aaKnown RBP15.23■□□□□ 0.03
LDLR-212ENST00000560467 HACL1Q9UJ83 578 aa15.23■□□□□ 0.03
LDLR-212ENST00000560467 RNF123Q5XPI4 1314 aa15.22■□□□□ 0.03
LDLR-212ENST00000560467 RGL2O15211 777 aa15.22■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms