RNA–Protein interactions for RNA: ENST00000560202.1

USP3-218, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 1,681 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-218ENST00000560202 IL6STP40189 918 aaPredicted RBP14.11□□□□□ -0.15
USP3-218ENST00000560202 CRKLP46109 303 aaKnown RBP14.11□□□□□ -0.15
USP3-218ENST00000560202 NEXNQ0ZGT2 675 aa14.11□□□□□ -0.15
USP3-218ENST00000560202 CENPQQ7L2Z9 268 aaPredicted RBP14.11□□□□□ -0.15
USP3-218ENST00000560202 ZNF330Q9Y3S2 320 aaPredicted RBP14.11□□□□□ -0.15
USP3-218ENST00000560202 GNAI3P08754 354 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 USP44Q9H0E7 712 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 RWDD1Q9H446 243 aaPredicted RBP14.1□□□□□ -0.15
USP3-218ENST00000560202 ZNF831Q5JPB2 1677 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 IGKV5-2P06315 115 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 KCNQ4P56696 695 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 CWF19L2Q2TBE0 894 aaKnown RBP14.1□□□□□ -0.15
USP3-218ENST00000560202 LINC00116Q8NCU8 138 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 MYD88Q99836 296 aa14.1□□□□□ -0.15
USP3-218ENST00000560202 CCNL1Q9UK58 526 aaPredicted RBP14.1□□□□□ -0.15
USP3-218ENST00000560202 N4BP2Q86UW6 1770 aaPredicted RBP14.09□□□□□ -0.15
USP3-218ENST00000560202 HDAC1Q13547 482 aaPredicted RBP14.09□□□□□ -0.15
USP3-218ENST00000560202 KIF6Q6ZMV9 814 aa14.09□□□□□ -0.15
USP3-218ENST00000560202 ZBTB3Q9H5J0 574 aa14.09□□□□□ -0.15
USP3-218ENST00000560202 NEURL1BA8MQ27 555 aa14.08□□□□□ -0.16
USP3-218ENST00000560202 GNAI2P04899 355 aa14.08□□□□□ -0.16
USP3-218ENST00000560202 UBTFL1P0CB47 393 aaPredicted RBP14.08□□□□□ -0.16
USP3-218ENST00000560202 EIF5P55010 431 aaKnown RBP14.08□□□□□ -0.16
USP3-218ENST00000560202 NPM2Q86SE8 214 aaKnown RBP14.08□□□□□ -0.16
USP3-218ENST00000560202 ARXQ96QS3 562 aa14.07□□□□□ -0.16
USP3-218ENST00000560202 IBTKQ9P2D0 1353 aaPredicted RBP14.07□□□□□ -0.16
USP3-218ENST00000560202 MAP3K15Q6ZN16 1313 aa14.07□□□□□ -0.16
USP3-218ENST00000560202 CNTNAP4Q9C0A0 1308 aa14.07□□□□□ -0.16
USP3-218ENST00000560202 MSH5O43196 834 aa14.07□□□□□ -0.16
USP3-218ENST00000560202 NBPF7P0C2Y1 421 aaPredicted RBP14.07□□□□□ -0.16
USP3-218ENST00000560202 RC3H1Q5TC82 1133 aaKnown RBP14.07□□□□□ -0.16
USP3-218ENST00000560202 DZIP3Q86Y13 1208 aaKnown RBP14.07□□□□□ -0.16
USP3-218ENST00000560202 SIRT2Q8IXJ6 389 aa14.07□□□□□ -0.16
USP3-218ENST00000560202 RPAP2Q8IXW5 612 aaPredicted RBP14.07□□□□□ -0.16
USP3-218ENST00000560202 C9orf78Q9NZ63 289 aaPredicted RBP14.07□□□□□ -0.16
USP3-218ENST00000560202 RREB1Q92766 1687 aa14.06□□□□□ -0.16
USP3-218ENST00000560202 ATP5J2-PTCD1G3V325 749 aa14.06□□□□□ -0.16
USP3-218ENST00000560202 GRM8O00222 908 aa14.06□□□□□ -0.16
USP3-218ENST00000560202 GCKRQ14397 625 aa14.06□□□□□ -0.16
USP3-218ENST00000560202 CEP85Q6P2H3 762 aa14.06□□□□□ -0.16
USP3-218ENST00000560202 ILDR1Q86SU0 546 aaPredicted RBP14.06□□□□□ -0.16
USP3-218ENST00000560202 ANKRD44Q8N8A2 993 aa14.06□□□□□ -0.16
USP3-218ENST00000560202 LY75O60449 1722 aa14.05□□□□□ -0.16
USP3-218ENST00000560202 COL5A3P25940 1745 aaPredicted RBP14.05□□□□□ -0.16
USP3-218ENST00000560202 ARFGEF2Q9Y6D5 1785 aa14.05□□□□□ -0.16
USP3-218ENST00000560202 TCIRG1Q13488 830 aa14.05□□□□□ -0.16
USP3-218ENST00000560202 TBC1D2BQ9UPU7 963 aa14.05□□□□□ -0.16
USP3-218ENST00000560202 LRRFIP2Q9Y608 721 aaKnown RBP14.05□□□□□ -0.16
USP3-218ENST00000560202 UTYO14607 1347 aa14.05□□□□□ -0.16
USP3-218ENST00000560202 ERVV-1B6SEH8 477 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 GIGYF2Q6Y7W6 1299 aaKnown RBP14.04□□□□□ -0.16
USP3-218ENST00000560202 LRRC4BQ9NT99 713 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 HDAC5Q9UQL6 1122 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 EP400Q96L91 3159 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 NUP188Q5SRE5 1749 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 HLFQ16534 295 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 SLC27A3Q5K4L6 730 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 ISCA1Q9BUE6 129 aa14.04□□□□□ -0.16
USP3-218ENST00000560202 A0A087WZG4 1122 aa14.03□□□□□ -0.16
USP3-218ENST00000560202 RPS6KA4O75676 772 aa14.03□□□□□ -0.16
USP3-218ENST00000560202 TRIM28Q13263 835 aaKnown RBP14.03□□□□□ -0.16
USP3-218ENST00000560202 HSP90AB3PQ58FF7 597 aa14.03□□□□□ -0.16
USP3-218ENST00000560202 CCDC191Q8NCU4 936 aa14.03□□□□□ -0.16
USP3-218ENST00000560202 CWC25Q9NXE8 425 aaPredicted RBP14.03□□□□□ -0.16
USP3-218ENST00000560202 COL15A1P39059 1388 aa14.02□□□□□ -0.16
USP3-218ENST00000560202 PLSCR1O15162 318 aa14.02□□□□□ -0.16
USP3-218ENST00000560202 APBA3O96018 575 aa14.02□□□□□ -0.16
USP3-218ENST00000560202 ATP8B2P98198 1209 aa14.02□□□□□ -0.16
USP3-218ENST00000560202 SMC5Q8IY18 1101 aa14.02□□□□□ -0.16
USP3-218ENST00000560202 MYH14Q7Z406 1995 aaKnown RBP14.02□□□□□ -0.17
USP3-218ENST00000560202 GNPATO15228 680 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 HMMRO75330 724 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 CAMTA2O94983 1202 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 TXNRD1Q16881 649 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 RBM19Q9Y4C8 960 aaKnown RBP14.01□□□□□ -0.17
USP3-218ENST00000560202 H7C1W4 665 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 PROM2Q8N271 834 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 GCC1Q96CN9 775 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 SUCLG2Q96I99 432 aa14.01□□□□□ -0.17
USP3-218ENST00000560202 RTCBQ9Y3I0 505 aaKnown RBP14.01□□□□□ -0.17
USP3-218ENST00000560202 PNMA6EA0A0J9YXQ4 647 aa14□□□□□ -0.17
USP3-218ENST00000560202 HMGB2P26583 209 aaKnown RBP14□□□□□ -0.17
USP3-218ENST00000560202 UBE3BQ7Z3V4 1068 aa14□□□□□ -0.17
USP3-218ENST00000560202 JARID2Q92833 1246 aaPredicted RBP14□□□□□ -0.17
USP3-218ENST00000560202 KAZALD1Q96I82 304 aa14□□□□□ -0.17
USP3-218ENST00000560202 AK7Q96M32 723 aa14□□□□□ -0.17
USP3-218ENST00000560202 DCTPP1Q9H773 170 aa14□□□□□ -0.17
USP3-218ENST00000560202 GPTP24298 496 aa13.99□□□□□ -0.17
USP3-218ENST00000560202 CASP7P55210 303 aa13.99□□□□□ -0.17
USP3-218ENST00000560202 SMIM5Q71RC9 77 aa13.99□□□□□ -0.17
USP3-218ENST00000560202 PPP1R42Q7Z4L9 355 aa13.99□□□□□ -0.17
USP3-218ENST00000560202 PDZRN3Q9UPQ7 1066 aa13.99□□□□□ -0.17
USP3-218ENST00000560202 C4BP0C0L5 1744 aa13.99□□□□□ -0.17
USP3-218ENST00000560202 MTX1Q13505 466 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 NLRP10Q86W26 655 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 SKAP1Q86WV1 359 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 ZNF34Q8IZ26 560 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 SRGAP3O43295 1099 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 POLA2Q14181 598 aa13.98□□□□□ -0.17
USP3-218ENST00000560202 AMIGO3Q86WK7 504 aa13.98□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 84 ms