RNA–Protein interactions for RNA: ENST00000559192.5

USP3-210, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 5,499 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-210ENST00000559192 SYT1P21579 422 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 SFPQP23246 707 aaKnown RBP eCLIP8.33□□□□□ -1.08
USP3-210ENST00000559192 TERF1P54274 439 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 ANO10Q9NW15 660 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 PAXBP1Q9Y5B6 917 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 RIMS2Q9UQ26 1411 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 URI1O94763 535 aaPredicted RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 IPO7O95373 1038 aaKnown RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 STX1AQ16623 288 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 HSP90AB2PQ58FF8 381 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 ZNF530Q6P9A1 599 aaPredicted RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 ZBTB9Q96C00 473 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 INTS4Q96HW7 963 aaKnown RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 ABCC1P33527 1531 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 UGGT1Q9NYU2 1555 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 ATP8B2P98198 1209 aa8.33□□□□□ -1.08
USP3-210ENST00000559192 LRRFIP1Q32MZ4 808 aaKnown RBP8.33□□□□□ -1.08
USP3-210ENST00000559192 PDIA4P13667 645 aaKnown RBP8.32□□□□□ -1.08
USP3-210ENST00000559192 SNW1Q13573 536 aaKnown RBP8.32□□□□□ -1.08
USP3-210ENST00000559192 CFAP100Q494V2 611 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 FSIP1Q8NA03 581 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 EIF4A2Q14240 407 aaKnown RBP8.32□□□□□ -1.08
USP3-210ENST00000559192 LRRC2Q9BYS8 371 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 PALD1Q9ULE6 856 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 NCKAP5LQ9HCH0 1330 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 ATP10AO60312 1499 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 SKILP12757 684 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 DNAAF4Q8WXU2 420 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 TTC37Q6PGP7 1564 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 IRX3P78415 501 aaPredicted RBP8.32□□□□□ -1.08
USP3-210ENST00000559192 DHX37Q8IY37 1157 aaKnown RBP8.32□□□□□ -1.08
USP3-210ENST00000559192 KRT222Q8N1A0 295 aa8.32□□□□□ -1.08
USP3-210ENST00000559192 IPO4Q8TEX9 1081 aaKnown RBP8.32□□□□□ -1.08
USP3-210ENST00000559192 ABCC4O15439 1325 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 KRT32Q14532 448 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 CAGE1Q8TC20 777 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 EVI5LQ96CN4 794 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 BCL2L12Q9HB09 334 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 BRD1O95696 1058 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 SAFBQ15424 915 aaKnown RBP eCLIP8.31□□□□□ -1.08
USP3-210ENST00000559192 PLEKHO1Q53GL0 409 aaPredicted RBP8.31□□□□□ -1.08
USP3-210ENST00000559192 AXDND1Q5T1B0 1012 aaPredicted RBP8.31□□□□□ -1.08
USP3-210ENST00000559192 ECHDC1Q9NTX5 307 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 RBM8AQ9Y5S9 174 aaKnown RBP8.31□□□□□ -1.08
USP3-210ENST00000559192 ZFYVE9O95405 1425 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 CBFA2T2O43439 604 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 FAM69CQ0P6D2 419 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 CYB5RLQ6IPT4 315 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 FAM173BQ6P4H8 233 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 FKBP4Q02790 459 aaKnown RBP eCLIP8.31□□□□□ -1.08
USP3-210ENST00000559192 TTC39AQ5SRH9 613 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 RAB11FIP4Q86YS3 637 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 SLC26A8Q96RN1 970 aa8.31□□□□□ -1.08
USP3-210ENST00000559192 CASQ1P31415 396 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 ANKRD20A12PQ8NF67 263 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 JARID2Q92833 1246 aaPredicted RBP8.3□□□□□ -1.08
USP3-210ENST00000559192 MAP3K2Q9Y2U5 619 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 SNX14Q9Y5W7 946 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 SMTNL1A8MU46 457 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 CDC42BPAQ5VT25 1732 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 ADCY10Q96PN6 1610 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 PI4KAP2A4QPH2 592 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 DHX16O60231 1041 aaKnown RBP8.3□□□□□ -1.08
USP3-210ENST00000559192 MTHFSDQ2M296 383 aaKnown RBP8.3□□□□□ -1.08
USP3-210ENST00000559192 AOPEPQ8N6M6 819 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 PI4KAP1Q8N8J0 262 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 PA2G4Q9UQ80 394 aaKnown RBP8.3□□□□□ -1.08
USP3-210ENST00000559192 CCDC171Q6TFL3 1326 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 IL13P35225 146 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 NMIQ13287 307 aaPredicted RBP8.3□□□□□ -1.08
USP3-210ENST00000559192 OGFRQ9NZT2 677 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 CD109Q6YHK3 1445 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 PNMA6EA0A0J9YXQ4 647 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 FAM193AP78312 1265 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 CCDC102AQ96A19 550 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 INCENPQ9NQS7 918 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 NLRP2Q9NX02 1062 aa8.3□□□□□ -1.08
USP3-210ENST00000559192 PIK3R4Q99570 1358 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 ERICH2A1L162 156 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 KIF2AO00139 706 aaPredicted RBP8.29□□□□□ -1.08
USP3-210ENST00000559192 NEMFO60524 1076 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 POLR3DP05423 398 aaPredicted RBP8.29□□□□□ -1.08
USP3-210ENST00000559192 MPRIPQ6WCQ1 1025 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 SIRT2Q8IXJ6 389 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 CHPF2Q9P2E5 772 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 CENPHQ9H3R5 247 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 CALCOCO1Q9P1Z2 691 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP8.29□□□□□ -1.081e-7■■■□□ 17.9
USP3-210ENST00000559192 CLASP1Q7Z460 1538 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 RAPGEF4Q8WZA2 1011 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 CTAGE5O15320 804 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 RUFY3Q7L099 469 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 PPFIBP1Q86W92 1011 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 MYD88Q99836 296 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 PLXNC1O60486 1568 aa8.29□□□□□ -1.08
USP3-210ENST00000559192 GOLGA6L7A0A1B0GV03 622 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 CCDC69A6NI79 296 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 TOP1P11387 765 aaKnown RBP8.28□□□□□ -1.08
USP3-210ENST00000559192 HSP90AA4PQ58FG1 418 aa8.28□□□□□ -1.08
USP3-210ENST00000559192 TIGD1Q96MW7 591 aa8.28□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms