RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 APAF1O14727 1248 aa16.41■□□□□ 0.22
SMAD3-208ENST00000558827 LMOD3Q0VAK6 560 aa16.41■□□□□ 0.22
SMAD3-208ENST00000558827 CNBD1Q8NA66 436 aa16.41■□□□□ 0.22
SMAD3-208ENST00000558827 ZBTB3Q9H5J0 574 aa16.41■□□□□ 0.22
SMAD3-208ENST00000558827 C9orf131Q5VYM1 1079 aa16.4■□□□□ 0.22
SMAD3-208ENST00000558827 NBPF5PQ86XG9 351 aaPredicted RBP16.4■□□□□ 0.22
SMAD3-208ENST00000558827 NRXN2Q9P2S2 1712 aa16.39■□□□□ 0.21
SMAD3-208ENST00000558827 GPTP24298 496 aa16.39■□□□□ 0.21
SMAD3-208ENST00000558827 RASSF7Q02833 373 aa16.39■□□□□ 0.21
SMAD3-208ENST00000558827 PROSER3Q2NL68 480 aa16.39■□□□□ 0.21
SMAD3-208ENST00000558827 TTLL6Q8N841 843 aa16.39■□□□□ 0.21
SMAD3-208ENST00000558827 GPBP1L1Q9HC44 474 aaPredicted RBP16.39■□□□□ 0.21
SMAD3-208ENST00000558827 ZNF652Q9Y2D9 606 aa16.39■□□□□ 0.21
SMAD3-208ENST00000558827 ANKRD31Q8N7Z5 1873 aa16.38■□□□□ 0.21
SMAD3-208ENST00000558827 ST5P78524 1137 aa16.38■□□□□ 0.21
SMAD3-208ENST00000558827 ZNF428Q96B54 188 aa16.38■□□□□ 0.21
SMAD3-208ENST00000558827 BRIP1Q9BX63 1249 aa16.38■□□□□ 0.21
SMAD3-208ENST00000558827 BCORQ6W2J9 1755 aa16.38■□□□□ 0.21
SMAD3-208ENST00000558827 LAMB4A4D0S4 1761 aa16.37■□□□□ 0.21
SMAD3-208ENST00000558827 PDE6BP35913 854 aa16.37■□□□□ 0.21
SMAD3-208ENST00000558827 C1QTNF8P60827 252 aa16.37■□□□□ 0.21
SMAD3-208ENST00000558827 AIMP1Q12904 312 aaKnown RBP16.37■□□□□ 0.21
SMAD3-208ENST00000558827 CLEC4GQ6UXB4 293 aa16.37■□□□□ 0.21
SMAD3-208ENST00000558827 KIF6Q6ZMV9 814 aa16.37■□□□□ 0.21
SMAD3-208ENST00000558827 RNF181Q9P0P0 153 aa16.37■□□□□ 0.21
SMAD3-208ENST00000558827 CHL1O00533 1208 aa16.36■□□□□ 0.21
SMAD3-208ENST00000558827 C21orf2O43822 256 aa16.36■□□□□ 0.21
SMAD3-208ENST00000558827 GTF2E1P29083 439 aaPredicted RBP16.36■□□□□ 0.21
SMAD3-208ENST00000558827 NUTM1Q86Y26 1132 aa16.36■□□□□ 0.21
SMAD3-208ENST00000558827 MAP3K15Q6ZN16 1313 aa16.36■□□□□ 0.21
SMAD3-208ENST00000558827 ADCY9O60503 1353 aa16.36■□□□□ 0.21
SMAD3-208ENST00000558827 ARFGEF1Q9Y6D6 1849 aa16.35■□□□□ 0.21
SMAD3-208ENST00000558827 PDIA6Q15084 440 aa16.35■□□□□ 0.21
SMAD3-208ENST00000558827 ELL2O00472 640 aaPredicted RBP16.34■□□□□ 0.21
SMAD3-208ENST00000558827 ANP32CO43423 234 aa16.34■□□□□ 0.21
SMAD3-208ENST00000558827 PRELPP51888 382 aa16.34■□□□□ 0.21
SMAD3-208ENST00000558827 TPTE2Q6XPS3 522 aa16.34■□□□□ 0.21
SMAD3-208ENST00000558827 XAGE3Q8WTP9 111 aa16.33■□□□□ 0.2
SMAD3-208ENST00000558827 MRS2Q9HD23 443 aa16.33■□□□□ 0.2
SMAD3-208ENST00000558827 MBIPQ9NS73 344 aa16.33■□□□□ 0.2
SMAD3-208ENST00000558827 BABAM1Q9NWV8 329 aa16.33■□□□□ 0.2
SMAD3-208ENST00000558827 SALL2Q9Y467 1007 aaPredicted RBP16.33■□□□□ 0.2
SMAD3-208ENST00000558827 COL11A2P13942 1736 aaPredicted RBP16.33■□□□□ 0.2
SMAD3-208ENST00000558827 ERVV-1B6SEH8 477 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 SRGNP10124 158 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 NUP98P52948 1817 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 CACNA1SQ13698 1873 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 ERFEQ4G0M1 354 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 SUSD4Q5VX71 490 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 COPS6Q7L5N1 327 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 NMRK2Q9NPI5 230 aa16.32■□□□□ 0.2
SMAD3-208ENST00000558827 UBN2Q6ZU65 1347 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 OLFM4Q6UX06 510 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 LRP10Q7Z4F1 713 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 MASTLQ96GX5 879 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 CHPF2Q9P2E5 772 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 SLX4Q8IY92 1834 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 DLEC1Q9Y238 1755 aa16.31■□□□□ 0.2
SMAD3-208ENST00000558827 NFKBIEO00221 500 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 HDGFL1Q5TGJ6 251 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 DUSP27Q5VZP5 1158 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 STYK1Q6J9G0 422 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 PRPF40BQ6NWY9 871 aaKnown RBP16.3■□□□□ 0.2
SMAD3-208ENST00000558827 CNKSR1Q969H4 720 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 CFAP44Q96MT7 982 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 SBF1O95248 1867 aa16.3■□□□□ 0.2
SMAD3-208ENST00000558827 CCDC88AQ3V6T2 1871 aa16.29■□□□□ 0.2
SMAD3-208ENST00000558827 ABCC12Q96J65 1359 aa16.29■□□□□ 0.2
SMAD3-208ENST00000558827 ERBB4Q15303 1308 aa16.29■□□□□ 0.2
SMAD3-208ENST00000558827 KIF3CO14782 793 aa16.29■□□□□ 0.2
SMAD3-208ENST00000558827 GIGYF2Q6Y7W6 1299 aaKnown RBP16.29■□□□□ 0.2
SMAD3-208ENST00000558827 TCERG1O14776 1098 aaKnown RBP16.28■□□□□ 0.2
SMAD3-208ENST00000558827 ZNF34Q8IZ26 560 aa16.28■□□□□ 0.2
SMAD3-208ENST00000558827 DDX21Q9NR30 783 aaKnown RBP eCLIP16.28■□□□□ 0.2
SMAD3-208ENST00000558827 PDZRN3Q9UPQ7 1066 aa16.28■□□□□ 0.2
SMAD3-208ENST00000558827 ZNF853P0CG23 659 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 NPR1P16066 1061 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 LMNB1P20700 586 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 C3orf67Q6ZVT6 689 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 SLC51AQ86UW1 340 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 SYNE4Q8N205 404 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 NYXQ9GZU5 481 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 RRAGCQ9HB90 399 aa16.27■□□□□ 0.2
SMAD3-208ENST00000558827 GNAI1P63096 354 aa16.26■□□□□ 0.19
SMAD3-208ENST00000558827 C8orf58Q8NAV2 365 aa16.26■□□□□ 0.19
SMAD3-208ENST00000558827 TSR2Q969E8 191 aaKnown RBP16.26■□□□□ 0.19
SMAD3-208ENST00000558827 IFT57Q9NWB7 429 aa16.26■□□□□ 0.19
SMAD3-208ENST00000558827 TNRC6CQ9HCJ0 1690 aaKnown RBP16.25■□□□□ 0.19
SMAD3-208ENST00000558827 RGL2O15211 777 aa16.25■□□□□ 0.19
SMAD3-208ENST00000558827 NTSR2O95665 410 aa16.25■□□□□ 0.19
SMAD3-208ENST00000558827 FAM9BQ8IZU0 186 aa16.25■□□□□ 0.19
SMAD3-208ENST00000558827 ATP5J2-PTCD1G3V325 749 aa16.24■□□□□ 0.19
SMAD3-208ENST00000558827 HCLS1P14317 486 aaPredicted RBP16.24■□□□□ 0.19
SMAD3-208ENST00000558827 PPP1R42Q7Z4L9 355 aa16.24■□□□□ 0.19
SMAD3-208ENST00000558827 TSPYL6Q8N831 410 aa16.24■□□□□ 0.19
SMAD3-208ENST00000558827 UTP14AQ9BVJ6 771 aaKnown RBP16.24■□□□□ 0.19
SMAD3-208ENST00000558827 KLRG2A4D1S0 409 aaPredicted RBP16.23■□□□□ 0.19
SMAD3-208ENST00000558827 RTL5Q5HYW3 569 aaPredicted RBP16.23■□□□□ 0.19
SMAD3-208ENST00000558827 C7orf43Q8WVR3 580 aa16.23■□□□□ 0.19
SMAD3-208ENST00000558827 RPGRQ92834 1020 aaKnown RBP16.23■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms