RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 THUMPD2Q9BTF0 503 aaKnown RBP11.23□□□□□ -0.61
USP3-208ENST00000558285 IFT57Q9NWB7 429 aa11.23□□□□□ -0.61
USP3-208ENST00000558285 MIS18AQ9NYP9 233 aa11.23□□□□□ -0.61
USP3-208ENST00000558285 PIM2Q9P1W9 311 aa11.23□□□□□ -0.61
USP3-208ENST00000558285 C10orf71Q711Q0 1435 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 C4AP0C0L4 1744 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 ERVV-1B6SEH8 477 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 SERPINB2P05120 415 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 TM4SF1P30408 202 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 NFIXQ14938 502 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 CNBD1Q8NA66 436 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 NLGN2Q8NFZ4 835 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 NYXQ9GZU5 481 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 TBC1D2BQ9UPU7 963 aa11.22□□□□□ -0.61
USP3-208ENST00000558285 H0YIN7 160 aa11.21□□□□□ -0.61
USP3-208ENST00000558285 POLRMTO00411 1230 aaKnown RBP11.21□□□□□ -0.61
USP3-208ENST00000558285 CHL1O00533 1208 aa11.21□□□□□ -0.61
USP3-208ENST00000558285 HSP90AB3PQ58FF7 597 aa11.21□□□□□ -0.61
USP3-208ENST00000558285 DALRD3Q5D0E6 543 aaKnown RBP11.21□□□□□ -0.61
USP3-208ENST00000558285 TPTE2Q6XPS3 522 aa11.21□□□□□ -0.61
USP3-208ENST00000558285 BICDL1Q6ZP65 573 aa11.21□□□□□ -0.61
USP3-208ENST00000558285 MYH14Q7Z406 1995 aaKnown RBP11.21□□□□□ -0.62
USP3-208ENST00000558285 PITPNM1O00562 1244 aa11.21□□□□□ -0.62
USP3-208ENST00000558285 CCDC27Q2M243 656 aa11.21□□□□□ -0.62
USP3-208ENST00000558285 NBPF5PQ86XG9 351 aaPredicted RBP11.21□□□□□ -0.62
USP3-208ENST00000558285 CAMTA2O94983 1202 aa11.2□□□□□ -0.62
USP3-208ENST00000558285 EIF2S2P20042 333 aaKnown RBP11.2□□□□□ -0.62
USP3-208ENST00000558285 BRIP1Q9BX63 1249 aa11.2□□□□□ -0.62
USP3-208ENST00000558285 BCS1LQ9Y276 419 aa11.2□□□□□ -0.62
USP3-208ENST00000558285 DLG5Q8TDM6 1919 aa11.2□□□□□ -0.62
USP3-208ENST00000558285 DDR1Q08345 913 aa11.19□□□□□ -0.62
USP3-208ENST00000558285 SOGA3Q5TF21 947 aa11.19□□□□□ -0.62
USP3-208ENST00000558285 DBF4Q9UBU7 674 aaPredicted RBP11.19□□□□□ -0.62
USP3-208ENST00000558285 TRIM35Q9UPQ4 493 aa11.19□□□□□ -0.62
USP3-208ENST00000558285 NIP7Q9Y221 180 aaKnown RBP eCLIP11.19□□□□□ -0.62
USP3-208ENST00000558285 KDM3BQ7LBC6 1761 aa11.19□□□□□ -0.62
USP3-208ENST00000558285 HSP90B1P14625 803 aaKnown RBP11.18□□□□□ -0.62
USP3-208ENST00000558285 MYL6BP14649 208 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 HDGFL1Q5TGJ6 251 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 HYPKQ9NX55 129 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 LAMB4A4D0S4 1761 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 IL16Q14005 1332 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 MAP3K15Q6ZN16 1313 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 A0A0G2JLW4 131 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 DPEP1P16444 411 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 PARP10Q53GL7 1025 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 TBC1D9BQ66K14 1250 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 PPP1R42Q7Z4L9 355 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 C2CD5Q86YS7 1000 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 CNKSR1Q969H4 720 aa11.18□□□□□ -0.62
USP3-208ENST00000558285 TMX4Q9H1E5 349 aaPredicted RBP11.18□□□□□ -0.62
USP3-208ENST00000558285 PXDNLA1KZ92 1463 aa11.17□□□□□ -0.62
USP3-208ENST00000558285 DDX58O95786 925 aaKnown RBP11.17□□□□□ -0.62
USP3-208ENST00000558285 TTLL6Q8N841 843 aa11.17□□□□□ -0.62
USP3-208ENST00000558285 STK31Q9BXU1 1019 aa11.17□□□□□ -0.62
USP3-208ENST00000558285 BCL2L12Q9HB09 334 aa11.17□□□□□ -0.62
USP3-208ENST00000558285 DDX21Q9NR30 783 aaKnown RBP eCLIP11.17□□□□□ -0.62
USP3-208ENST00000558285 SCN7AQ01118 1682 aa11.17□□□□□ -0.62
USP3-208ENST00000558285 RNF123Q5XPI4 1314 aa11.17□□□□□ -0.62
USP3-208ENST00000558285 PRAMEF22A3QJZ6 481 aa11.16□□□□□ -0.62
USP3-208ENST00000558285 NBPF26B4DH59 902 aa11.16□□□□□ -0.62
USP3-208ENST00000558285 CCDC30Q5VVM6 783 aa11.16□□□□□ -0.62
USP3-208ENST00000558285 NBPF10Q6P3W6 841 aaKnown RBP11.16□□□□□ -0.62
USP3-208ENST00000558285 WDR63Q8IWG1 891 aa11.16□□□□□ -0.62
USP3-208ENST00000558285 NBPF15Q8N660 670 aa11.16□□□□□ -0.62
USP3-208ENST00000558285 MYH16Q9H6N6 1097 aa11.16□□□□□ -0.62
USP3-208ENST00000558285 IBTKQ9P2D0 1353 aaPredicted RBP11.16□□□□□ -0.62
USP3-208ENST00000558285 YBX3P16989 372 aaKnown RBP eCLIP11.15□□□□□ -0.623e-6■■■□□ 16.3
USP3-208ENST00000558285 GOLGA2Q08379 1002 aa11.15□□□□□ -0.62
USP3-208ENST00000558285 DUSP27Q5VZP5 1158 aa11.15□□□□□ -0.62
USP3-208ENST00000558285 ARHGAP27Q6ZUM4 889 aa11.15□□□□□ -0.62
USP3-208ENST00000558285 FAM9BQ8IZU0 186 aa11.15□□□□□ -0.62
USP3-208ENST00000558285 MBIPQ9NS73 344 aa11.15□□□□□ -0.62
USP3-208ENST00000558285 PIP4K2AP48426 406 aaPredicted RBP11.15□□□□□ -0.63
USP3-208ENST00000558285 STYK1Q6J9G0 422 aa11.15□□□□□ -0.63
USP3-208ENST00000558285 PRR5LQ6MZQ0 368 aa11.15□□□□□ -0.63
USP3-208ENST00000558285 GIGYF2Q6Y7W6 1299 aaKnown RBP11.15□□□□□ -0.63
USP3-208ENST00000558285 ZNF622Q969S3 477 aaKnown RBP eCLIP11.15□□□□□ -0.63
USP3-208ENST00000558285 KIF13BQ9NQT8 1826 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 ATP10DQ9P241 1426 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 CCER2I3L3R5 266 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 ALDH1B1P30837 517 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 TPRNQ4KMQ1 711 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 GRIPAP1Q4V328 841 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 WWC1Q8IX03 1113 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 MASTLQ96GX5 879 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 ZBTB3Q9H5J0 574 aa11.14□□□□□ -0.63
USP3-208ENST00000558285 ZNF853P0CG23 659 aa11.13□□□□□ -0.63
USP3-208ENST00000558285 NPR1P16066 1061 aa11.13□□□□□ -0.63
USP3-208ENST00000558285 GABBR2O75899 941 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 CHRNA5P30532 468 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 AIMP1Q12904 312 aaKnown RBP11.12□□□□□ -0.63
USP3-208ENST00000558285 COPS6Q7L5N1 327 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 PLBD2Q8NHP8 589 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 RPGRQ92834 1020 aaKnown RBP11.12□□□□□ -0.63
USP3-208ENST00000558285 UTP14AQ9BVJ6 771 aaKnown RBP11.12□□□□□ -0.63
USP3-208ENST00000558285 CHD4Q14839 1912 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 BCORQ6W2J9 1755 aa11.12□□□□□ -0.63
USP3-208ENST00000558285 ZC3H4Q9UPT8 1303 aaKnown RBP11.12□□□□□ -0.63
USP3-208ENST00000558285 ANKRD13DQ6ZTN6 518 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms