RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 SCN11AQ9UI33 1791 aa16.89■□□□□ 0.3
SHMT2-230ENST00000557427 CENPBP07199 599 aaPredicted RBP16.89■□□□□ 0.29
SHMT2-230ENST00000557427 MCOLN1Q9GZU1 580 aa16.89■□□□□ 0.29
SHMT2-230ENST00000557427 LGR6Q9HBX8 967 aa16.89■□□□□ 0.29
SHMT2-230ENST00000557427 PDZRN3Q9UPQ7 1066 aa16.89■□□□□ 0.29
SHMT2-230ENST00000557427 SRGNP10124 158 aa16.88■□□□□ 0.29
SHMT2-230ENST00000557427 CANXP27824 592 aaKnown RBP16.88■□□□□ 0.29
SHMT2-230ENST00000557427 EIF5P55010 431 aaKnown RBP16.88■□□□□ 0.29
SHMT2-230ENST00000557427 CYP4F22Q6NT55 531 aa16.88■□□□□ 0.29
SHMT2-230ENST00000557427 CAPNS2Q96L46 248 aa16.88■□□□□ 0.29
SHMT2-230ENST00000557427 CFAP44Q96MT7 982 aa16.88■□□□□ 0.29
SHMT2-230ENST00000557427 SLC52A2Q9HAB3 445 aa16.88■□□□□ 0.29
SHMT2-230ENST00000557427 CACNA1SQ13698 1873 aa16.88■□□□□ 0.29
SHMT2-230ENST00000557427 STYK1Q6J9G0 422 aa16.87■□□□□ 0.29
SHMT2-230ENST00000557427 CNKSR1Q969H4 720 aa16.87■□□□□ 0.29
SHMT2-230ENST00000557427 DDX21Q9NR30 783 aaKnown RBP eCLIP16.87■□□□□ 0.29
SHMT2-230ENST00000557427 KNSTRNQ9Y448 316 aa16.87■□□□□ 0.29
SHMT2-230ENST00000557427 KIF7Q2M1P5 1343 aa16.87■□□□□ 0.29
SHMT2-230ENST00000557427 RNF123Q5XPI4 1314 aa16.87■□□□□ 0.29
SHMT2-230ENST00000557427 PDE4DIPQ5VU43 2346 aa16.86■□□□□ 0.29
SHMT2-230ENST00000557427 GPR101Q96P66 508 aaPredicted RBP16.86■□□□□ 0.29
SHMT2-230ENST00000557427 LTBP1Q14766 1721 aa16.86■□□□□ 0.29
SHMT2-230ENST00000557427 PNMA8AQ86V59 439 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-230ENST00000557427 MORC1Q86VD1 984 aa16.85■□□□□ 0.29
SHMT2-230ENST00000557427 ZNF277Q9NRM2 450 aaPredicted RBP16.85■□□□□ 0.29
SHMT2-230ENST00000557427 ARFGEF2Q9Y6D5 1785 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 AOC2O75106 756 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 DDX10Q13206 875 aaKnown RBP16.84■□□□□ 0.29
SHMT2-230ENST00000557427 GRM1Q13255 1194 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 SOGA3Q5TF21 947 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 CST9Q5W186 159 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 OLFM4Q6UX06 510 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 BEGAINQ9BUH8 593 aa16.84■□□□□ 0.29
SHMT2-230ENST00000557427 MRC1P22897 1456 aa16.83■□□□□ 0.28
SHMT2-230ENST00000557427 AKAP4Q5JQC9 854 aa16.83■□□□□ 0.28
SHMT2-230ENST00000557427 SULT6B1Q6IMI4 303 aa16.83■□□□□ 0.28
SHMT2-230ENST00000557427 VSIG10Q8N0Z9 540 aa16.83■□□□□ 0.28
SHMT2-230ENST00000557427 MASTLQ96GX5 879 aa16.83■□□□□ 0.28
SHMT2-230ENST00000557427 TBC1D2BQ9UPU7 963 aa16.83■□□□□ 0.28
SHMT2-230ENST00000557427 CASP8AP2Q9UKL3 1982 aa16.82■□□□□ 0.28
SHMT2-230ENST00000557427 FZD9O00144 591 aa16.82■□□□□ 0.28
SHMT2-230ENST00000557427 ECE1P42892 770 aa16.82■□□□□ 0.28
SHMT2-230ENST00000557427 FKBP4Q02790 459 aaKnown RBP eCLIP16.82■□□□□ 0.28
SHMT2-230ENST00000557427 CNGB1Q14028 1251 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-230ENST00000557427 PAXIP1Q6ZW49 1069 aaPredicted RBP16.82■□□□□ 0.28
SHMT2-230ENST00000557427 SCN7AQ01118 1682 aa16.81■□□□□ 0.28
SHMT2-230ENST00000557427 RNMTO43148 476 aaKnown RBP16.81■□□□□ 0.28
SHMT2-230ENST00000557427 CCDC93Q567U6 631 aa16.81■□□□□ 0.28
SHMT2-230ENST00000557427 A0A087WZG4 1122 aa16.8■□□□□ 0.28
SHMT2-230ENST00000557427 TRAF5O00463 557 aa16.8■□□□□ 0.28
SHMT2-230ENST00000557427 CNBD1Q8NA66 436 aa16.8■□□□□ 0.28
SHMT2-230ENST00000557427 MAP2K2P36507 400 aa16.79■□□□□ 0.28
SHMT2-230ENST00000557427 DGKZQ13574 1117 aa16.79■□□□□ 0.28
SHMT2-230ENST00000557427 GPC2Q8N158 579 aa16.79■□□□□ 0.28
SHMT2-230ENST00000557427 TLL2Q9Y6L7 1015 aa16.79■□□□□ 0.28
SHMT2-230ENST00000557427 UBR2Q8IWV8 1755 aa16.79■□□□□ 0.28
SHMT2-230ENST00000557427 CAMTA2O94983 1202 aa16.78■□□□□ 0.28
SHMT2-230ENST00000557427 SETDB2Q96T68 719 aa16.78■□□□□ 0.28
SHMT2-230ENST00000557427 STARD3NLO95772 234 aa16.77■□□□□ 0.28
SHMT2-230ENST00000557427 IL13P35225 146 aa16.77■□□□□ 0.28
SHMT2-230ENST00000557427 IARSP41252 1262 aaKnown RBP16.77■□□□□ 0.28
SHMT2-230ENST00000557427 AMER1Q5JTC6 1135 aaPredicted RBP16.77■□□□□ 0.28
SHMT2-230ENST00000557427 CC2D1BQ5T0F9 858 aaKnown RBP16.77■□□□□ 0.28
SHMT2-230ENST00000557427 COL4A5P29400 1685 aa16.77■□□□□ 0.28
SHMT2-230ENST00000557427 PER1O15534 1290 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-230ENST00000557427 EPS15P42566 896 aa16.76■□□□□ 0.27
SHMT2-230ENST00000557427 ST5P78524 1137 aa16.76■□□□□ 0.27
SHMT2-230ENST00000557427 SYNE4Q8N205 404 aa16.76■□□□□ 0.27
SHMT2-230ENST00000557427 ZNF330Q9Y3S2 320 aaPredicted RBP16.76■□□□□ 0.27
SHMT2-230ENST00000557427 TRPM7Q96QT4 1865 aa16.76■□□□□ 0.27
SHMT2-230ENST00000557427 KLRG2A4D1S0 409 aaPredicted RBP16.75■□□□□ 0.27
SHMT2-230ENST00000557427 SCNN1DP51172 638 aa16.75■□□□□ 0.27
SHMT2-230ENST00000557427 SNED1Q8TER0 1413 aa16.75■□□□□ 0.27
SHMT2-230ENST00000557427 NPHP1O15259 732 aa16.74■□□□□ 0.27
SHMT2-230ENST00000557427 CA12O43570 354 aa16.74■□□□□ 0.27
SHMT2-230ENST00000557427 NPR1P16066 1061 aa16.74■□□□□ 0.27
SHMT2-230ENST00000557427 IL6STP40189 918 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-230ENST00000557427 SOX10P56693 466 aa16.74■□□□□ 0.27
SHMT2-230ENST00000557427 SAPCD2Q86UD0 394 aa16.74■□□□□ 0.27
SHMT2-230ENST00000557427 RTKN2Q8IZC4 609 aa16.74■□□□□ 0.27
SHMT2-230ENST00000557427 ZNF496Q96IT1 587 aaPredicted RBP16.74■□□□□ 0.27
SHMT2-230ENST00000557427 A1BGP04217 495 aa16.73■□□□□ 0.27
SHMT2-230ENST00000557427 ZIC5Q96T25 663 aa16.73■□□□□ 0.27
SHMT2-230ENST00000557427 GJA3Q9Y6H8 435 aa16.73■□□□□ 0.27
SHMT2-230ENST00000557427 CCER2I3L3R5 266 aa16.72■□□□□ 0.27
SHMT2-230ENST00000557427 ANP32CO43423 234 aa16.72■□□□□ 0.27
SHMT2-230ENST00000557427 BRPF1P55201 1214 aaPredicted RBP16.72■□□□□ 0.27
SHMT2-230ENST00000557427 MTHFSDQ2M296 383 aaKnown RBP16.72■□□□□ 0.27
SHMT2-230ENST00000557427 PRPF38BQ5VTL8 546 aaKnown RBP16.72■□□□□ 0.27
SHMT2-230ENST00000557427 CIAPIN1Q6FI81 312 aa16.71■□□□□ 0.27
SHMT2-230ENST00000557427 YTHDC1Q96MU7 727 aaKnown RBP16.71■□□□□ 0.27
SHMT2-230ENST00000557427 HEG1Q9ULI3 1381 aa16.71■□□□□ 0.27
SHMT2-230ENST00000557427 BCORQ6W2J9 1755 aa16.7■□□□□ 0.26
SHMT2-230ENST00000557427 USP50Q70EL3 339 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-230ENST00000557427 NBPF5PQ86XG9 351 aaPredicted RBP16.7■□□□□ 0.26
SHMT2-230ENST00000557427 LMOD1P29536 600 aaPredicted RBP16.69■□□□□ 0.26
SHMT2-230ENST00000557427 SLC51AQ86UW1 340 aa16.69■□□□□ 0.26
SHMT2-230ENST00000557427 DZIP3Q86Y13 1208 aaKnown RBP16.69■□□□□ 0.26
SHMT2-230ENST00000557427 TTC5Q8N0Z6 440 aa16.69■□□□□ 0.26
SHMT2-230ENST00000557427 JDP2Q8WYK2 163 aa16.69■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms