RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 PLA2G4DQ86XP0 818 aa16.21■□□□□ 0.18
SHMT2-226ENST00000556825 FAM200AQ8TCP9 573 aa16.21■□□□□ 0.18
SHMT2-226ENST00000556825 COQ9O75208 318 aa16.2■□□□□ 0.18
SHMT2-226ENST00000556825 SEC31AO94979 1220 aaKnown RBP16.2■□□□□ 0.18
SHMT2-226ENST00000556825 ZNF75DP51815 510 aa16.2■□□□□ 0.18
SHMT2-226ENST00000556825 RBM5P52756 815 aaKnown RBP eCLIP16.2■□□□□ 0.18
SHMT2-226ENST00000556825 MTA1Q13330 715 aa16.2■□□□□ 0.18
SHMT2-226ENST00000556825 ANKRD45Q5TZF3 282 aa16.2■□□□□ 0.18
SHMT2-226ENST00000556825 FAM107BQ9H098 131 aa16.2■□□□□ 0.18
SHMT2-226ENST00000556825 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP16.2■□□□□ 0.18
SHMT2-226ENST00000556825 MAFGO15525 162 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 CCDC192P0DO97 292 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 EIF5P55010 431 aaKnown RBP16.19■□□□□ 0.18
SHMT2-226ENST00000556825 UBE2HP62256 183 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 TEX11Q8IYF3 940 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 ATAD2Q6PL18 1390 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 LRRN4CLQ8ND94 238 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 UBXN4Q92575 508 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 SLC24A3Q9HC58 644 aa16.19■□□□□ 0.18
SHMT2-226ENST00000556825 REREQ9P2R6 1566 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 ARAP3Q8WWN8 1544 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 NEDD9Q14511 834 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 AP1ARQ63HQ0 302 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 TEX13AQ9BXU3 409 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-226ENST00000556825 DISP3Q9P2K9 1392 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 GCFC2P16383 781 aaKnown RBP16.18■□□□□ 0.18
SHMT2-226ENST00000556825 PAX7P23759 505 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 TBC1D8BQ0IIM8 1120 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 ANKRD23Q86SG2 305 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 LRRC8AQ8IWT6 810 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 ZNF526Q8TF50 670 aaPredicted RBP16.18■□□□□ 0.18
SHMT2-226ENST00000556825 KAT2BQ92831 832 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 VEZTQ9HBM0 779 aa16.18■□□□□ 0.18
SHMT2-226ENST00000556825 ABCC1P33527 1531 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 ANKRD65E5RJM6 399 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 ERLIN2O94905 339 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 CC2D1AQ6P1N0 951 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-226ENST00000556825 CCAR2Q8N163 923 aaKnown RBP16.17■□□□□ 0.18
SHMT2-226ENST00000556825 ERCC4Q92889 916 aaPredicted RBP16.17■□□□□ 0.18
SHMT2-226ENST00000556825 GRIK3Q13003 919 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 CUL4AQ13619 759 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 CCDC158Q5M9N0 1113 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 KCNV1Q6PIU1 500 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 CCDC34Q96HJ3 373 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 MCM8Q9UJA3 840 aa16.17■□□□□ 0.18
SHMT2-226ENST00000556825 PLEKHO1Q53GL0 409 aaPredicted RBP16.16■□□□□ 0.18
SHMT2-226ENST00000556825 TMX3Q96JJ7 454 aa16.16■□□□□ 0.18
SHMT2-226ENST00000556825 TRIM5Q9C035 493 aa16.16■□□□□ 0.18
SHMT2-226ENST00000556825 IRAK4Q9NWZ3 460 aa16.16■□□□□ 0.18
SHMT2-226ENST00000556825 TRAK1Q9UPV9 953 aa16.16■□□□□ 0.18
SHMT2-226ENST00000556825 ASXL2Q76L83 1435 aa16.16■□□□□ 0.18
SHMT2-226ENST00000556825 ANKRD18BA2A2Z9 1011 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 CAND2O75155 1236 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 CDC25BP30305 580 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 INTS4Q96HW7 963 aaKnown RBP16.15■□□□□ 0.18
SHMT2-226ENST00000556825 SH3GL3Q99963 347 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 ZBTB40Q9NUA8 1239 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 CLIP2Q9UDT6 1046 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 CCDC144BQ3MJ40 725 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 LRRC31Q6UY01 552 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 ITPRIPQ8IWB1 547 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 CCDC144CPQ8IYA2 1237 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 KDM2AQ9Y2K7 1162 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 ABCA9Q8IUA7 1624 aa16.15■□□□□ 0.18
SHMT2-226ENST00000556825 WDR33Q9C0J8 1336 aaKnown RBP16.15■□□□□ 0.18
SHMT2-226ENST00000556825 H3BQF6 201 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 TUBB4AP04350 444 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 MCM2P49736 904 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 CRYMQ14894 314 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 CPLX2Q6PUV4 134 aaKnown RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 CTCFLQ8NI51 663 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 PUS7Q96PZ0 661 aaKnown RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 TESK2Q96S53 571 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 TRIM6Q9C030 488 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 SKILP12757 684 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 TRAF1Q13077 416 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 FOXD4L6Q3SYB3 417 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 FOXD4L3Q6VB84 417 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 JPH2Q9BR39 696 aaPredicted RBP16.14■□□□□ 0.17
SHMT2-226ENST00000556825 DUOX2Q9NRD8 1548 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 TRAPPC8Q9Y2L5 1435 aa16.14■□□□□ 0.17
SHMT2-226ENST00000556825 RPAP1Q9BWH6 1393 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-226ENST00000556825 PPFIA4O75335 1185 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 WDR63Q8IWG1 891 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 CCDC26Q8TAB7 109 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 FUT8Q9BYC5 575 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 TRMT1Q9NXH9 659 aaKnown RBP16.13■□□□□ 0.17
SHMT2-226ENST00000556825 CT47B1P0C2W7 299 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-226ENST00000556825 GPTP24298 496 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 RWDD2BP57060 319 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 SCRN1Q12765 414 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 LUZP1Q86V48 1076 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 ZNF483Q8TF39 744 aaPredicted RBP16.13■□□□□ 0.17
SHMT2-226ENST00000556825 GCC1Q96CN9 775 aa16.13■□□□□ 0.17
SHMT2-226ENST00000556825 DDR1Q08345 913 aa16.12■□□□□ 0.17
SHMT2-226ENST00000556825 SNW1Q13573 536 aaKnown RBP16.12■□□□□ 0.17
SHMT2-226ENST00000556825 C1QTNF12Q5T7M4 302 aa16.12■□□□□ 0.17
SHMT2-226ENST00000556825 KLHL23Q8NBE8 558 aa16.12■□□□□ 0.17
SHMT2-226ENST00000556825 ARFGAP3Q9NP61 516 aa16.12■□□□□ 0.17
SHMT2-226ENST00000556825 UNC13BO14795 1591 aa16.12■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms