RNA–Protein interactions for RNA: ENST00000554971.6

SHOX-204, Transcript of short stature homeobox, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHOX, Length 1,902 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHOX-204ENST00000554971 ERBB4Q15303 1308 aa21.98■■□□□ 1.11
SHOX-204ENST00000554971 RARSP54136 660 aaKnown RBP21.97■■□□□ 1.11
SHOX-204ENST00000554971 ZNF330Q9Y3S2 320 aaPredicted RBP21.97■■□□□ 1.11
SHOX-204ENST00000554971 BCORQ6W2J9 1755 aa21.97■■□□□ 1.11
SHOX-204ENST00000554971 TRAPPC3LQ5T215 181 aa21.96■■□□□ 1.11
SHOX-204ENST00000554971 DDX21Q9NR30 783 aaKnown RBP eCLIP21.96■■□□□ 1.11
SHOX-204ENST00000554971 ADRA2BP18089 450 aa21.96■■□□□ 1.11
SHOX-204ENST00000554971 SCN7AQ01118 1682 aa21.96■■□□□ 1.11
SHOX-204ENST00000554971 DDRGK1Q96HY6 314 aa21.96■■□□□ 1.11
SHOX-204ENST00000554971 DBF4Q9UBU7 674 aaPredicted RBP21.95■■□□□ 1.1
SHOX-204ENST00000554971 CCDC30Q5VVM6 783 aa21.94■■□□□ 1.1
SHOX-204ENST00000554971 SRP68Q9UHB9 627 aaKnown RBP21.94■■□□□ 1.1
SHOX-204ENST00000554971 NUP98P52948 1817 aa21.93■■□□□ 1.1
SHOX-204ENST00000554971 FAM161AQ3B820 660 aa21.93■■□□□ 1.1
SHOX-204ENST00000554971 TTLL7Q6ZT98 887 aa21.93■■□□□ 1.1
SHOX-204ENST00000554971 FLAD1Q8NFF5 587 aa21.93■■□□□ 1.1
SHOX-204ENST00000554971 TBC1D2BQ9UPU7 963 aa21.93■■□□□ 1.1
SHOX-204ENST00000554971 COL24A1Q17RW2 1714 aa21.93■■□□□ 1.1
SHOX-204ENST00000554971 USP42Q9H9J4 1324 aaKnown RBP21.92■■□□□ 1.1
SHOX-204ENST00000554971 CLUAP1Q96AJ1 413 aa21.92■■□□□ 1.1
SHOX-204ENST00000554971 PHAXQ9H814 394 aaKnown RBP21.92■■□□□ 1.1
SHOX-204ENST00000554971 RFC4P35249 363 aa21.91■■□□□ 1.1
SHOX-204ENST00000554971 BCL2L12Q9HB09 334 aa21.91■■□□□ 1.1
SHOX-204ENST00000554971 G2E3Q7L622 706 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 DZIP3Q86Y13 1208 aaKnown RBP21.9■■□□□ 1.1
SHOX-204ENST00000554971 NARFQ9UHQ1 456 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 CAMTA2O94983 1202 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 SLC4A2P04920 1241 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 GYS1P13807 737 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 COPS6Q7L5N1 327 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 XAGE3Q8WTP9 111 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 SSH1Q8WYL5 1049 aa21.9■■□□□ 1.1
SHOX-204ENST00000554971 USPL1Q5W0Q7 1092 aa21.89■■□□□ 1.09
SHOX-204ENST00000554971 HYPKQ9NX55 129 aa21.89■■□□□ 1.09
SHOX-204ENST00000554971 ARFGEF2Q9Y6D5 1785 aa21.89■■□□□ 1.09
SHOX-204ENST00000554971 ZBTB7AO95365 584 aa21.88■■□□□ 1.09
SHOX-204ENST00000554971 AIMP1Q12904 312 aaKnown RBP21.88■■□□□ 1.09
SHOX-204ENST00000554971 BCL2L13Q9BXK5 485 aa21.88■■□□□ 1.09
SHOX-204ENST00000554971 STK31Q9BXU1 1019 aa21.88■■□□□ 1.09
SHOX-204ENST00000554971 A0A087WZG4 1122 aa21.87■■□□□ 1.09
SHOX-204ENST00000554971 MSL1Q68DK7 614 aa21.87■■□□□ 1.09
SHOX-204ENST00000554971 ARXQ96QS3 562 aa21.87■■□□□ 1.09
SHOX-204ENST00000554971 CHMP4AQ9BY43 222 aa21.87■■□□□ 1.09
SHOX-204ENST00000554971 HLFQ16534 295 aa21.86■■□□□ 1.09
SHOX-204ENST00000554971 ZNF428Q96B54 188 aa21.86■■□□□ 1.09
SHOX-204ENST00000554971 ZPR1O75312 459 aa21.86■■□□□ 1.09
SHOX-204ENST00000554971 SLC16A10Q8TF71 515 aa21.86■■□□□ 1.09
SHOX-204ENST00000554971 ZBTB3Q9H5J0 574 aa21.86■■□□□ 1.09
SHOX-204ENST00000554971 MAP3K15Q6ZN16 1313 aa21.85■■□□□ 1.09
SHOX-204ENST00000554971 ANKRD36CQ5JPF3 1778 aa21.85■■□□□ 1.09
SHOX-204ENST00000554971 NPM2Q86SE8 214 aaKnown RBP21.85■■□□□ 1.09
SHOX-204ENST00000554971 MRPL50Q8N5N7 158 aaKnown RBP21.85■■□□□ 1.09
SHOX-204ENST00000554971 ALDH1L2Q3SY69 923 aa21.84■■□□□ 1.09
SHOX-204ENST00000554971 FLIIQ13045 1269 aa21.84■■□□□ 1.09
SHOX-204ENST00000554971 MTFR1LQ9H019 292 aa21.84■■□□□ 1.09
SHOX-204ENST00000554971 COG6Q9Y2V7 657 aa21.84■■□□□ 1.09
SHOX-204ENST00000554971 PANK1Q8TE04 598 aa21.83■■□□□ 1.09
SHOX-204ENST00000554971 SGIP1Q9BQI5 828 aa21.83■■□□□ 1.09
SHOX-204ENST00000554971 ATF5Q9Y2D1 282 aaPredicted RBP21.83■■□□□ 1.09
SHOX-204ENST00000554971 C8orf34Q49A92 452 aa21.82■■□□□ 1.08
SHOX-204ENST00000554971 FRAT1Q92837 279 aaPredicted RBP21.82■■□□□ 1.08
SHOX-204ENST00000554971 AFDNP55196 1824 aaKnown RBP21.82■■□□□ 1.08
SHOX-204ENST00000554971 ADCY9O60503 1353 aa21.82■■□□□ 1.08
SHOX-204ENST00000554971 ERVV-1B6SEH8 477 aa21.82■■□□□ 1.08
SHOX-204ENST00000554971 KIF6Q6ZMV9 814 aa21.82■■□□□ 1.08
SHOX-204ENST00000554971 ANKRD13DQ6ZTN6 518 aa21.82■■□□□ 1.08
SHOX-204ENST00000554971 SMC4Q9NTJ3 1288 aa21.82■■□□□ 1.08
SHOX-204ENST00000554971 IGHDP01880 384 aa21.81■■□□□ 1.08
SHOX-204ENST00000554971 PTGER2P43116 358 aa21.81■■□□□ 1.08
SHOX-204ENST00000554971 ZKSCAN2Q63HK3 967 aa21.81■■□□□ 1.08
SHOX-204ENST00000554971 TBC1D9BQ66K14 1250 aa21.81■■□□□ 1.08
SHOX-204ENST00000554971 CLEC4GQ6UXB4 293 aa21.8■■□□□ 1.08
SHOX-204ENST00000554971 PLBD2Q8NHP8 589 aa21.8■■□□□ 1.08
SHOX-204ENST00000554971 GIGYF2Q6Y7W6 1299 aaKnown RBP21.8■■□□□ 1.08
SHOX-204ENST00000554971 NLGN1Q8N2Q7 840 aa21.8■■□□□ 1.08
SHOX-204ENST00000554971 PI4KAP2A4QPH2 592 aa21.79■■□□□ 1.08
SHOX-204ENST00000554971 TM4SF1P30408 202 aa21.79■■□□□ 1.08
SHOX-204ENST00000554971 BRPF1P55201 1214 aaPredicted RBP21.79■■□□□ 1.08
SHOX-204ENST00000554971 DDR1Q08345 913 aa21.79■■□□□ 1.08
SHOX-204ENST00000554971 NFIXQ14938 502 aa21.79■■□□□ 1.08
SHOX-204ENST00000554971 PI4KAP1Q8N8J0 262 aa21.79■■□□□ 1.08
SHOX-204ENST00000554971 RWDD1Q9H446 243 aaPredicted RBP21.79■■□□□ 1.08
SHOX-204ENST00000554971 RGL2O15211 777 aa21.78■■□□□ 1.08
SHOX-204ENST00000554971 ATP10DQ9P241 1426 aa21.78■■□□□ 1.08
SHOX-204ENST00000554971 FKBP5Q13451 457 aaPredicted RBP21.78■■□□□ 1.08
SHOX-204ENST00000554971 NRXN2Q9P2S2 1712 aa21.78■■□□□ 1.08
SHOX-204ENST00000554971 UBN2Q6ZU65 1347 aa21.77■■□□□ 1.08
SHOX-204ENST00000554971 MMP10P09238 476 aa21.77■■□□□ 1.08
SHOX-204ENST00000554971 MVPQ14764 893 aaKnown RBP21.77■■□□□ 1.08
SHOX-204ENST00000554971 KSR2Q6VAB6 950 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 BICDL1Q6ZP65 573 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 SKAP1Q86WV1 359 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 MAP3K2Q9Y2U5 619 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 F6X3S4 739 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 RIC3Q7Z5B4 369 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 DZIP1LQ8IYY4 767 aaKnown RBP21.76■■□□□ 1.07
SHOX-204ENST00000554971 ZNF652Q9Y2D9 606 aa21.76■■□□□ 1.07
SHOX-204ENST00000554971 POLRMTO00411 1230 aaKnown RBP21.75■■□□□ 1.07
SHOX-204ENST00000554971 RGS3P49796 1198 aa21.75■■□□□ 1.07
SHOX-204ENST00000554971 ZNF34Q8IZ26 560 aa21.75■■□□□ 1.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.8 ms