RNA–Protein interactions for RNA: ENST00000553868.1

SHMT2-208, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 941 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-208ENST00000553868 LMOD3Q0VAK6 560 aa18.84■□□□□ 0.61
SHMT2-208ENST00000553868 NFE2L2Q16236 605 aa18.84■□□□□ 0.61
SHMT2-208ENST00000553868 TAF1DQ9H5J8 278 aaPredicted RBP18.84■□□□□ 0.61
SHMT2-208ENST00000553868 NRXN2Q9P2S2 1712 aa18.83■□□□□ 0.61
SHMT2-208ENST00000553868 NEUROD2Q15784 382 aa18.83■□□□□ 0.6
SHMT2-208ENST00000553868 EAPPQ56P03 285 aaPredicted RBP18.83■□□□□ 0.6
SHMT2-208ENST00000553868 INTS5Q6P9B9 1019 aaKnown RBP18.83■□□□□ 0.6
SHMT2-208ENST00000553868 AEBP1Q8IUX7 1158 aa18.83■□□□□ 0.6
SHMT2-208ENST00000553868 FER1L6Q2WGJ9 1857 aa18.83■□□□□ 0.6
SHMT2-208ENST00000553868 ZPR1O75312 459 aa18.82■□□□□ 0.6
SHMT2-208ENST00000553868 WDR63Q8IWG1 891 aa18.82■□□□□ 0.6
SHMT2-208ENST00000553868 WWC1Q8IX03 1113 aa18.82■□□□□ 0.6
SHMT2-208ENST00000553868 RRP7AQ9Y3A4 280 aaKnown RBP18.82■□□□□ 0.6
SHMT2-208ENST00000553868 TJP1Q07157 1748 aa18.82■□□□□ 0.6
SHMT2-208ENST00000553868 ERVV-2B6SEH9 535 aa18.81■□□□□ 0.6
SHMT2-208ENST00000553868 H0YIN7 160 aa18.81■□□□□ 0.6
SHMT2-208ENST00000553868 SERPINB2P05120 415 aa18.81■□□□□ 0.6
SHMT2-208ENST00000553868 RIPK4P57078 832 aa18.81■□□□□ 0.6
SHMT2-208ENST00000553868 MCOLN1Q9GZU1 580 aa18.81■□□□□ 0.6
SHMT2-208ENST00000553868 ABT1Q9ULW3 272 aaKnown RBP18.81■□□□□ 0.6
SHMT2-208ENST00000553868 CALD1Q05682 793 aaKnown RBP18.8■□□□□ 0.6
SHMT2-208ENST00000553868 GRM1Q13255 1194 aa18.8■□□□□ 0.6
SHMT2-208ENST00000553868 GAS2L2Q8NHY3 880 aa18.8■□□□□ 0.6
SHMT2-208ENST00000553868 ZNF622Q969S3 477 aaKnown RBP eCLIP18.8■□□□□ 0.6
SHMT2-208ENST00000553868 PHACTR3Q96KR7 559 aa18.8■□□□□ 0.6
SHMT2-208ENST00000553868 CLEC11AQ9Y240 323 aa18.8■□□□□ 0.6
SHMT2-208ENST00000553868 E9PSI1 815 aa18.79■□□□□ 0.6
SHMT2-208ENST00000553868 CABP4P57796 275 aa18.79■□□□□ 0.6
SHMT2-208ENST00000553868 MAP1SQ66K74 1059 aaPredicted RBP18.79■□□□□ 0.6
SHMT2-208ENST00000553868 IQCA1LA6NCM1 817 aa18.78■□□□□ 0.6
SHMT2-208ENST00000553868 BCL2L12Q9HB09 334 aa18.78■□□□□ 0.6
SHMT2-208ENST00000553868 SCN4AP35499 1836 aa18.78■□□□□ 0.6
SHMT2-208ENST00000553868 PAXIP1Q6ZW49 1069 aaPredicted RBP18.77■□□□□ 0.6
SHMT2-208ENST00000553868 CCDC24Q8N4L8 307 aa18.77■□□□□ 0.6
SHMT2-208ENST00000553868 TAOK3Q9H2K8 898 aa18.77■□□□□ 0.6
SHMT2-208ENST00000553868 CASP8AP2Q9UKL3 1982 aa18.77■□□□□ 0.59
SHMT2-208ENST00000553868 IL16Q14005 1332 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 ADAMTSL1Q8N6G6 1762 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 ANKRD31Q8N7Z5 1873 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 THSD7BQ9C0I4 1608 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 FMR1Q06787 632 aaKnown RBP eCLIP18.76■□□□□ 0.59
SHMT2-208ENST00000553868 SLFN5Q08AF3 891 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 CNTROBQ8N137 903 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 L3MBTL3Q96JM7 780 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-208ENST00000553868 BEGAINQ9BUH8 593 aa18.76■□□□□ 0.59
SHMT2-208ENST00000553868 COL11A2P13942 1736 aaPredicted RBP18.76■□□□□ 0.59
SHMT2-208ENST00000553868 SOS1Q07889 1333 aaPredicted RBP18.75■□□□□ 0.59
SHMT2-208ENST00000553868 CYP4F22Q6NT55 531 aa18.75■□□□□ 0.59
SHMT2-208ENST00000553868 CAPNS2Q96L46 248 aa18.75■□□□□ 0.59
SHMT2-208ENST00000553868 MYH16Q9H6N6 1097 aa18.75■□□□□ 0.59
SHMT2-208ENST00000553868 TRIM35Q9UPQ4 493 aa18.75■□□□□ 0.59
SHMT2-208ENST00000553868 LTBP1Q14766 1721 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 AMOTQ4VCS5 1084 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 PLEKHO1Q53GL0 409 aaPredicted RBP18.74■□□□□ 0.59
SHMT2-208ENST00000553868 BICDL1Q6ZP65 573 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 DNAJC10Q8IXB1 793 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 CDCA7LQ96GN5 454 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 NARFQ9UHQ1 456 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 ZNF541Q9H0D2 1346 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 LTBP3Q9NS15 1303 aa18.74■□□□□ 0.59
SHMT2-208ENST00000553868 CACNA1SQ13698 1873 aa18.73■□□□□ 0.59
SHMT2-208ENST00000553868 HTATSF1O43719 755 aaKnown RBP18.73■□□□□ 0.59
SHMT2-208ENST00000553868 NFATC2IPQ8NCF5 419 aa18.73■□□□□ 0.59
SHMT2-208ENST00000553868 GPR101Q96P66 508 aaPredicted RBP18.73■□□□□ 0.59
SHMT2-208ENST00000553868 SLX4Q8IY92 1834 aa18.72■□□□□ 0.59
SHMT2-208ENST00000553868 EPHX2P34913 555 aa18.72■□□□□ 0.59
SHMT2-208ENST00000553868 MTHFSDQ2M296 383 aaKnown RBP18.72■□□□□ 0.59
SHMT2-208ENST00000553868 RTF1Q92541 710 aaKnown RBP18.72■□□□□ 0.59
SHMT2-208ENST00000553868 HACL1Q9UJ83 578 aa18.72■□□□□ 0.59
SHMT2-208ENST00000553868 AOC2O75106 756 aa18.71■□□□□ 0.59
SHMT2-208ENST00000553868 DGKZQ13574 1117 aa18.71■□□□□ 0.59
SHMT2-208ENST00000553868 TRMT2AQ8IZ69 625 aaKnown RBP18.71■□□□□ 0.59
SHMT2-208ENST00000553868 COL15A1P39059 1388 aa18.7■□□□□ 0.58
SHMT2-208ENST00000553868 HSP90AB1P08238 724 aaKnown RBP18.7■□□□□ 0.58
SHMT2-208ENST00000553868 SOX10P56693 466 aa18.7■□□□□ 0.58
SHMT2-208ENST00000553868 DUSP27Q5VZP5 1158 aa18.7■□□□□ 0.58
SHMT2-208ENST00000553868 ZNF530Q6P9A1 599 aaPredicted RBP18.7■□□□□ 0.58
SHMT2-208ENST00000553868 DDX21Q9NR30 783 aaKnown RBP eCLIP18.7■□□□□ 0.58
SHMT2-208ENST00000553868 RNF123Q5XPI4 1314 aa18.7■□□□□ 0.58
SHMT2-208ENST00000553868 ZBTB1Q9Y2K1 713 aa18.69■□□□□ 0.58
SHMT2-208ENST00000553868 GNAT3A8MTJ3 354 aa18.68■□□□□ 0.58
SHMT2-208ENST00000553868 CYP19A1P11511 503 aaPredicted RBP18.67■□□□□ 0.58
SHMT2-208ENST00000553868 ECE1P42892 770 aa18.67■□□□□ 0.58
SHMT2-208ENST00000553868 GNAI1P63096 354 aa18.67■□□□□ 0.58
SHMT2-208ENST00000553868 C1orf141Q5JVX7 400 aa18.67■□□□□ 0.58
SHMT2-208ENST00000553868 PRPF40BQ6NWY9 871 aaKnown RBP18.67■□□□□ 0.58
SHMT2-208ENST00000553868 AKAP4Q5JQC9 854 aa18.66■□□□□ 0.58
SHMT2-208ENST00000553868 PRPF38BQ5VTL8 546 aaKnown RBP18.66■□□□□ 0.58
SHMT2-208ENST00000553868 BRIP1Q9BX63 1249 aa18.66■□□□□ 0.58
SHMT2-208ENST00000553868 IFT57Q9NWB7 429 aa18.66■□□□□ 0.58
SHMT2-208ENST00000553868 PDE6BP35913 854 aa18.65■□□□□ 0.58
SHMT2-208ENST00000553868 TBC1D9BQ66K14 1250 aa18.65■□□□□ 0.58
SHMT2-208ENST00000553868 PRR5LQ6MZQ0 368 aa18.65■□□□□ 0.58
SHMT2-208ENST00000553868 PNMA8AQ86V59 439 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-208ENST00000553868 SPINK5Q9NQ38 1064 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-208ENST00000553868 ZNF277Q9NRM2 450 aaPredicted RBP18.65■□□□□ 0.58
SHMT2-208ENST00000553868 RCAN3Q9UKA8 241 aa18.65■□□□□ 0.58
SHMT2-208ENST00000553868 TRAF5O00463 557 aa18.64■□□□□ 0.57
SHMT2-208ENST00000553868 NEFLP07196 543 aa18.64■□□□□ 0.57
SHMT2-208ENST00000553868 CST9Q5W186 159 aa18.64■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms