RNA–Protein interactions for RNA: ENST00000542777.1

DDX11-222, Transcript of DEAD/H-box helicase 11, human

TSL 2

Gene DDX11, Length 489 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDX11-222	ENST00000542777	IFFO2	Q5TF58	517 aa		21.32	■■□□□ 1
DDX11-222	ENST00000542777	CNKSR1	Q969H4	720 aa		21.32	■■□□□ 1
DDX11-222	ENST00000542777	MIS18A	Q9NYP9	233 aa		21.32	■■□□□ 1
DDX11-222	ENST00000542777	TIAM2	Q8IVF5	1701 aa		21.32	■■□□□ 1
DDX11-222	ENST00000542777	WDR90	Q96KV7	1748 aa		21.32	■■□□□ 1
DDX11-222	ENST00000542777	NBPF26	B4DH59	902 aa		21.31	■■□□□ 1
DDX11-222	ENST00000542777	VEGFA	P15692	232 aa	Predicted RBP	21.31	■■□□□ 1
DDX11-222	ENST00000542777	STYK1	Q6J9G0	422 aa		21.31	■■□□□ 1
DDX11-222	ENST00000542777	NBPF10	Q6P3W6	841 aa	Known RBP	21.31	■■□□□ 1
DDX11-222	ENST00000542777	NBPF5P	Q86XG9	351 aa	Predicted RBP	21.31	■■□□□ 1
DDX11-222	ENST00000542777	NBPF15	Q8N660	670 aa		21.31	■■□□□ 1
DDX11-222	ENST00000542777	FER1L6	Q2WGJ9	1857 aa		21.3	■■□□□ 1
DDX11-222	ENST00000542777	SRGN	P10124	158 aa		21.3	■■□□□ 1
DDX11-222	ENST00000542777	SMC1B	Q8NDV3	1235 aa		21.3	■■□□□ 1
DDX11-222	ENST00000542777	MASTL	Q96GX5	879 aa		21.3	■■□□□ 1
DDX11-222	ENST00000542777	DLG5	Q8TDM6	1919 aa		21.29	■■□□□ 1
DDX11-222	ENST00000542777	CACNA1S	Q13698	1873 aa		21.29	■■□□□ 1
DDX11-222	ENST00000542777	HTRA3	P83110	453 aa		21.29	■■□□□ 1
DDX11-222	ENST00000542777	DPY19L2	Q6NUT2	758 aa		21.29	■■□□□ 1
DDX11-222	ENST00000542777	SLX4	Q8IY92	1834 aa		21.29	■■□□□ 1
DDX11-222	ENST00000542777	DICER1	Q9UPY3	1922 aa	Known RBP	21.28	■■□□□ 1
DDX11-222	ENST00000542777	ERFE	Q4G0M1	354 aa		21.28	■■□□□ 1
DDX11-222	ENST00000542777	PRPF40B	Q6NWY9	871 aa	Known RBP	21.28	■■□□□ 1
DDX11-222	ENST00000542777	NIP7	Q9Y221	180 aa	Known RBP eCLIP	21.28	■■□□□ 1
DDX11-222	ENST00000542777	RGL2	O15211	777 aa		21.27	■■□□□ 1
DDX11-222	ENST00000542777	TPTE2	Q6XPS3	522 aa		21.27	■■□□□ 1
DDX11-222	ENST00000542777	PNISR	Q8TF01	805 aa	Known RBP	21.27	■■□□□ 1
DDX11-222	ENST00000542777	PLEKHF1	Q96S99	279 aa		21.27	■■□□□ 1
DDX11-222	ENST00000542777	LTBP3	Q9NS15	1303 aa		21.27	■□□□□ 0.99
DDX11-222	ENST00000542777	SOGA3	Q5TF21	947 aa		21.26	■□□□□ 0.99
DDX11-222	ENST00000542777	TAOK3	Q9H2K8	898 aa		21.26	■□□□□ 0.99
DDX11-222	ENST00000542777	ARFGEF2	Q9Y6D5	1785 aa		21.25	■□□□□ 0.99
DDX11-222	ENST00000542777	FAM177B	A6PVY3	158 aa		21.25	■□□□□ 0.99
DDX11-222	ENST00000542777	NFE2L2	Q16236	605 aa		21.25	■□□□□ 0.99
DDX11-222	ENST00000542777	HLF	Q16534	295 aa		21.25	■□□□□ 0.99
DDX11-222	ENST00000542777	KLRG1	Q96E93	195 aa		21.25	■□□□□ 0.99
DDX11-222	ENST00000542777	LAMB4	A4D0S4	1761 aa		21.24	■□□□□ 0.99
DDX11-222	ENST00000542777	POTEC	B2RU33	542 aa		21.24	■□□□□ 0.99
DDX11-222	ENST00000542777	NPR1	P16066	1061 aa		21.24	■□□□□ 0.99
DDX11-222	ENST00000542777	PNN	Q9H307	717 aa	Known RBP	21.24	■□□□□ 0.99
DDX11-222	ENST00000542777	KDM3B	Q7LBC6	1761 aa		21.23	■□□□□ 0.99
DDX11-222	ENST00000542777	KLRG2	A4D1S0	409 aa	Predicted RBP	21.23	■□□□□ 0.99
DDX11-222	ENST00000542777	EIF4A1	P60842	406 aa	Known RBP	21.23	■□□□□ 0.99
DDX11-222	ENST00000542777	NGEF	Q8N5V2	710 aa		21.23	■□□□□ 0.99
DDX11-222	ENST00000542777	THUMPD2	Q9BTF0	503 aa	Known RBP	21.23	■□□□□ 0.99
DDX11-222	ENST00000542777	C7orf43	Q8WVR3	580 aa		21.22	■□□□□ 0.99
DDX11-222	ENST00000542777	MAPK8IP3	Q9UPT6	1336 aa		21.22	■□□□□ 0.99
DDX11-222	ENST00000542777	GTF2E1	P29083	439 aa	Predicted RBP	21.21	■□□□□ 0.99
DDX11-222	ENST00000542777	CCDC93	Q567U6	631 aa		21.21	■□□□□ 0.99
DDX11-222	ENST00000542777	RRP7A	Q9Y3A4	280 aa	Known RBP	21.21	■□□□□ 0.99
DDX11-222	ENST00000542777	ERVV-1	B6SEH8	477 aa		21.19	■□□□□ 0.98
DDX11-222	ENST00000542777	DDN	O94850	711 aa	Predicted RBP	21.19	■□□□□ 0.98
DDX11-222	ENST00000542777	JMY	Q8N9B5	988 aa		21.19	■□□□□ 0.98
DDX11-222	ENST00000542777	NUP98	P52948	1817 aa		21.18	■□□□□ 0.98
DDX11-222	ENST00000542777	MYL6B	P14649	208 aa		21.18	■□□□□ 0.98
DDX11-222	ENST00000542777	TTLL7	Q6ZT98	887 aa		21.18	■□□□□ 0.98
DDX11-222	ENST00000542777	MAP3K15	Q6ZN16	1313 aa		21.18	■□□□□ 0.98
DDX11-222	ENST00000542777	ALDH1B1	P30837	517 aa		21.17	■□□□□ 0.98
DDX11-222	ENST00000542777	KIF6	Q6ZMV9	814 aa		21.17	■□□□□ 0.98
DDX11-222	ENST00000542777	NYX	Q9GZU5	481 aa		21.17	■□□□□ 0.98
DDX11-222	ENST00000542777	FKBP4	Q02790	459 aa	Known RBP eCLIP	21.16	■□□□□ 0.98
DDX11-222	ENST00000542777	OLFM4	Q6UX06	510 aa		21.16	■□□□□ 0.98
DDX11-222	ENST00000542777	RALBP1	Q15311	655 aa		21.15	■□□□□ 0.98
DDX11-222	ENST00000542777	NUTM1	Q86Y26	1132 aa		21.15	■□□□□ 0.98
DDX11-222	ENST00000542777	RTKN2	Q8IZC4	609 aa		21.15	■□□□□ 0.98
DDX11-222	ENST00000542777	TSPYL4	Q9UJ04	414 aa		21.15	■□□□□ 0.98
DDX11-222	ENST00000542777	GPT	P24298	496 aa		21.14	■□□□□ 0.97
DDX11-222	ENST00000542777	RIPK4	P57078	832 aa		21.14	■□□□□ 0.97
DDX11-222	ENST00000542777	ZBTB3	Q9H5J0	574 aa		21.14	■□□□□ 0.97
DDX11-222	ENST00000542777	ZNF277	Q9NRM2	450 aa	Predicted RBP	21.14	■□□□□ 0.97
DDX11-222	ENST00000542777	CHADL	Q6NUI6	762 aa		21.13	■□□□□ 0.97
DDX11-222	ENST00000542777	ABCC12	Q96J65	1359 aa		21.12	■□□□□ 0.97
DDX11-222	ENST00000542777	ERBB4	Q15303	1308 aa		21.12	■□□□□ 0.97
DDX11-222	ENST00000542777	CRY2	Q49AN0	593 aa		21.12	■□□□□ 0.97
DDX11-222	ENST00000542777	UBN2	Q6ZU65	1347 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	IQCA1L	A6NCM1	817 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	POTEI	P0CG38	1075 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	POTEJ	P0CG39	1038 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	SUSD4	Q5VX71	490 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	GIGYF2	Q6Y7W6	1299 aa	Known RBP	21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	ZNF34	Q8IZ26	560 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	SYNE4	Q8N205	404 aa		21.11	■□□□□ 0.97
DDX11-222	ENST00000542777	EIF2S2	P20042	333 aa	Known RBP	21.1	■□□□□ 0.97
DDX11-222	ENST00000542777	L3MBTL3	Q96JM7	780 aa	Predicted RBP	21.1	■□□□□ 0.97
DDX11-222	ENST00000542777	IBTK	Q9P2D0	1353 aa	Predicted RBP	21.1	■□□□□ 0.97
DDX11-222	ENST00000542777	SCN4A	P35499	1836 aa		21.09	■□□□□ 0.97
DDX11-222	ENST00000542777	IARS	P41252	1262 aa	Known RBP	21.09	■□□□□ 0.97
DDX11-222	ENST00000542777	TMPO	P42166	694 aa	Known RBP	21.09	■□□□□ 0.97
DDX11-222	ENST00000542777	RPGR	Q92834	1020 aa	Known RBP	21.09	■□□□□ 0.97
DDX11-222	ENST00000542777	BABAM1	Q9NWV8	329 aa		21.09	■□□□□ 0.97
DDX11-222	ENST00000542777	ZNF541	Q9H0D2	1346 aa		21.08	■□□□□ 0.97
DDX11-222	ENST00000542777	LMOD3	Q0VAK6	560 aa		21.08	■□□□□ 0.97
DDX11-222	ENST00000542777	PDIA6	Q15084	440 aa		21.08	■□□□□ 0.97
DDX11-222	ENST00000542777	TAF1D	Q9H5J8	278 aa	Predicted RBP	21.08	■□□□□ 0.97
DDX11-222	ENST00000542777	RIC1	Q4ADV7	1423 aa		21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	NTSR2	O95665	410 aa		21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	HOXA10	P31260	410 aa	Predicted RBP	21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	DDX10	Q13206	875 aa	Known RBP	21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	CC2D2B	Q6DHV5	1058 aa		21.07	■□□□□ 0.96
DDX11-222	ENST00000542777	LRP10	Q7Z4F1	713 aa		21.07	■□□□□ 0.96

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms