RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 NEFMP07197 916 aa18.77■□□□□ 0.6
SNHG1-213ENST00000540725 ST5P78524 1137 aa18.77■□□□□ 0.6
SNHG1-213ENST00000540725 TAF7Q15545 349 aaPredicted RBP18.77■□□□□ 0.6
SNHG1-213ENST00000540725 ZNF219Q9P2Y4 722 aaPredicted RBP18.77■□□□□ 0.6
SNHG1-213ENST00000540725 NBPF26B4DH59 902 aa18.76■□□□□ 0.59
SNHG1-213ENST00000540725 C21orf2O43822 256 aa18.76■□□□□ 0.59
SNHG1-213ENST00000540725 FSTL1Q12841 308 aa18.76■□□□□ 0.59
SNHG1-213ENST00000540725 NBPF10Q6P3W6 841 aaKnown RBP18.76■□□□□ 0.59
SNHG1-213ENST00000540725 CLEC4GQ6UXB4 293 aa18.76■□□□□ 0.59
SNHG1-213ENST00000540725 NBPF15Q8N660 670 aa18.76■□□□□ 0.59
SNHG1-213ENST00000540725 ZNF652Q9Y2D9 606 aa18.76■□□□□ 0.59
SNHG1-213ENST00000540725 GLTPD2A6NH11 291 aa18.75■□□□□ 0.59
SNHG1-213ENST00000540725 MIS18AQ9NYP9 233 aa18.75■□□□□ 0.59
SNHG1-213ENST00000540725 STYK1Q6J9G0 422 aa18.74■□□□□ 0.59
SNHG1-213ENST00000540725 NBPF5PQ86XG9 351 aaPredicted RBP18.74■□□□□ 0.59
SNHG1-213ENST00000540725 NUP98P52948 1817 aa18.74■□□□□ 0.59
SNHG1-213ENST00000540725 SRGNP10124 158 aa18.73■□□□□ 0.59
SNHG1-213ENST00000540725 DNAJC5GQ8N7S2 189 aa18.73■□□□□ 0.59
SNHG1-213ENST00000540725 CNKSR1Q969H4 720 aa18.73■□□□□ 0.59
SNHG1-213ENST00000540725 PRPF40BQ6NWY9 871 aaKnown RBP18.72■□□□□ 0.59
SNHG1-213ENST00000540725 MASTLQ96GX5 879 aa18.72■□□□□ 0.59
SNHG1-213ENST00000540725 PLEKHF1Q96S99 279 aa18.72■□□□□ 0.59
SNHG1-213ENST00000540725 RGL2O15211 777 aa18.71■□□□□ 0.59
SNHG1-213ENST00000540725 VEGFAP15692 232 aaPredicted RBP18.71■□□□□ 0.59
SNHG1-213ENST00000540725 NFE2L2Q16236 605 aa18.71■□□□□ 0.59
SNHG1-213ENST00000540725 SMC1BQ8NDV3 1235 aa18.71■□□□□ 0.59
SNHG1-213ENST00000540725 PNISRQ8TF01 805 aaKnown RBP18.71■□□□□ 0.59
SNHG1-213ENST00000540725 NIP7Q9Y221 180 aaKnown RBP eCLIP18.71■□□□□ 0.594e-44■■■■■ 26.8
SNHG1-213ENST00000540725 LTBP3Q9NS15 1303 aa18.71■□□□□ 0.59
SNHG1-213ENST00000540725 TAOK3Q9H2K8 898 aa18.7■□□□□ 0.58
SNHG1-213ENST00000540725 HTRA3P83110 453 aa18.69■□□□□ 0.58
SNHG1-213ENST00000540725 ERFEQ4G0M1 354 aa18.69■□□□□ 0.58
SNHG1-213ENST00000540725 TPTE2Q6XPS3 522 aa18.69■□□□□ 0.58
SNHG1-213ENST00000540725 THUMPD2Q9BTF0 503 aaKnown RBP18.69■□□□□ 0.58
SNHG1-213ENST00000540725 MAPK8IP3Q9UPT6 1336 aa18.69■□□□□ 0.58
SNHG1-213ENST00000540725 HLFQ16534 295 aa18.68■□□□□ 0.58
SNHG1-213ENST00000540725 SOGA3Q5TF21 947 aa18.68■□□□□ 0.58
SNHG1-213ENST00000540725 DPY19L2Q6NUT2 758 aa18.68■□□□□ 0.58
SNHG1-213ENST00000540725 PNNQ9H307 717 aaKnown RBP18.68■□□□□ 0.58
SNHG1-213ENST00000540725 FAM177BA6PVY3 158 aa18.68■□□□□ 0.58
SNHG1-213ENST00000540725 NPR1P16066 1061 aa18.68■□□□□ 0.58
SNHG1-213ENST00000540725 EIF4A1P60842 406 aaKnown RBP18.68■□□□□ 0.58
SNHG1-213ENST00000540725 IFFO2Q5TF58 517 aa18.68■□□□□ 0.58
SNHG1-213ENST00000540725 KLRG2A4D1S0 409 aaPredicted RBP18.67■□□□□ 0.58
SNHG1-213ENST00000540725 NGEFQ8N5V2 710 aa18.67■□□□□ 0.58
SNHG1-213ENST00000540725 POTECB2RU33 542 aa18.66■□□□□ 0.58
SNHG1-213ENST00000540725 C7orf43Q8WVR3 580 aa18.66■□□□□ 0.58
SNHG1-213ENST00000540725 KLRG1Q96E93 195 aa18.66■□□□□ 0.58
SNHG1-213ENST00000540725 CCDC93Q567U6 631 aa18.65■□□□□ 0.58
SNHG1-213ENST00000540725 RRP7AQ9Y3A4 280 aaKnown RBP18.65■□□□□ 0.58
SNHG1-213ENST00000540725 MAP3K15Q6ZN16 1313 aa18.64■□□□□ 0.57
SNHG1-213ENST00000540725 ERVV-1B6SEH8 477 aa18.64■□□□□ 0.57
SNHG1-213ENST00000540725 GTF2E1P29083 439 aaPredicted RBP18.64■□□□□ 0.57
SNHG1-213ENST00000540725 MYL6BP14649 208 aa18.63■□□□□ 0.57
SNHG1-213ENST00000540725 KIF6Q6ZMV9 814 aa18.63■□□□□ 0.57
SNHG1-213ENST00000540725 TTLL7Q6ZT98 887 aa18.63■□□□□ 0.57
SNHG1-213ENST00000540725 PCNTO95613 3336 aa18.63■□□□□ 0.57
SNHG1-213ENST00000540725 ABCC12Q96J65 1359 aa18.62■□□□□ 0.57
SNHG1-213ENST00000540725 RALBP1Q15311 655 aa18.62■□□□□ 0.57
SNHG1-213ENST00000540725 NYXQ9GZU5 481 aa18.62■□□□□ 0.57
SNHG1-213ENST00000540725 SCN4AP35499 1836 aa18.62■□□□□ 0.57
SNHG1-213ENST00000540725 DDNO94850 711 aaPredicted RBP18.61■□□□□ 0.57
SNHG1-213ENST00000540725 FKBP4Q02790 459 aaKnown RBP eCLIP18.61■□□□□ 0.57
SNHG1-213ENST00000540725 OLFM4Q6UX06 510 aa18.61■□□□□ 0.57
SNHG1-213ENST00000540725 TSPYL4Q9UJ04 414 aa18.61■□□□□ 0.57
SNHG1-213ENST00000540725 ERBB4Q15303 1308 aa18.6■□□□□ 0.57
SNHG1-213ENST00000540725 ALDH1B1P30837 517 aa18.6■□□□□ 0.57
SNHG1-213ENST00000540725 RIPK4P57078 832 aa18.6■□□□□ 0.57
SNHG1-213ENST00000540725 NUTM1Q86Y26 1132 aa18.6■□□□□ 0.57
SNHG1-213ENST00000540725 JMYQ8N9B5 988 aa18.6■□□□□ 0.57
SNHG1-213ENST00000540725 ZBTB3Q9H5J0 574 aa18.6■□□□□ 0.57
SNHG1-213ENST00000540725 IBTKQ9P2D0 1353 aaPredicted RBP18.6■□□□□ 0.57
SNHG1-213ENST00000540725 GPTP24298 496 aa18.59■□□□□ 0.57
SNHG1-213ENST00000540725 CRY2Q49AN0 593 aa18.59■□□□□ 0.57
SNHG1-213ENST00000540725 RTKN2Q8IZC4 609 aa18.59■□□□□ 0.57
SNHG1-213ENST00000540725 UBN2Q6ZU65 1347 aa18.59■□□□□ 0.57
SNHG1-213ENST00000540725 RIC1Q4ADV7 1423 aa18.58■□□□□ 0.57
SNHG1-213ENST00000540725 ZNF277Q9NRM2 450 aaPredicted RBP18.58■□□□□ 0.57
SNHG1-213ENST00000540725 TMPOP42166 694 aaKnown RBP18.57■□□□□ 0.56
SNHG1-213ENST00000540725 ANKRD36CQ5JPF3 1778 aa18.57■□□□□ 0.56
SNHG1-213ENST00000540725 LMOD3Q0VAK6 560 aa18.56■□□□□ 0.56
SNHG1-213ENST00000540725 SUSD4Q5VX71 490 aa18.56■□□□□ 0.56
SNHG1-213ENST00000540725 GIGYF2Q6Y7W6 1299 aaKnown RBP18.56■□□□□ 0.56
SNHG1-213ENST00000540725 ZNF34Q8IZ26 560 aa18.56■□□□□ 0.56
SNHG1-213ENST00000540725 SNED1Q8TER0 1413 aa18.56■□□□□ 0.56
SNHG1-213ENST00000540725 MYBBP1AQ9BQG0 1328 aaKnown RBP18.56■□□□□ 0.56
SNHG1-213ENST00000540725 POTEIP0CG38 1075 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 POTEJP0CG39 1038 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 EIF2S2P20042 333 aaKnown RBP18.55■□□□□ 0.56
SNHG1-213ENST00000540725 DDX10Q13206 875 aaKnown RBP18.55■□□□□ 0.56
SNHG1-213ENST00000540725 CHADLQ6NUI6 762 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 L3MBTL3Q96JM7 780 aaPredicted RBP18.55■□□□□ 0.56
SNHG1-213ENST00000540725 BABAM1Q9NWV8 329 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 ZNF541Q9H0D2 1346 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 IQCA1LA6NCM1 817 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 NTSR2O95665 410 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 PDIA6Q15084 440 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 LRP10Q7Z4F1 713 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 SYNE4Q8N205 404 aa18.55■□□□□ 0.56
SNHG1-213ENST00000540725 RPGRQ92834 1020 aaKnown RBP18.55■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 336.5 ms