RNA–Protein interactions for RNA: ENST00000539662.1

HMGA2-209, Transcript of high mobility group AT-hook 2, human

TSL 3

Gene HMGA2, Length 485 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGA2-209	ENST00000539662	DPEP1	P16444	411 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	KCNA3	P22001	575 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	CHRNA5	P30532	468 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	GNAI1	P63096	354 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	GPR162	Q16538	588 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	MIER1	Q8N108	512 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	TSPYL6	Q8N831	410 aa		13.96	□□□□□ -0.17
HMGA2-209	ENST00000539662	BRCA1	P38398	1863 aa	Known RBP	13.95	□□□□□ -0.18
HMGA2-209	ENST00000539662	DIEXF	Q68CQ4	756 aa	Known RBP	13.95	□□□□□ -0.18
HMGA2-209	ENST00000539662	ZBTB3	Q9H5J0	574 aa		13.95	□□□□□ -0.18
HMGA2-209	ENST00000539662	CHPF2	Q9P2E5	772 aa		13.95	□□□□□ -0.18
HMGA2-209	ENST00000539662	NPM2	Q86SE8	214 aa	Known RBP	13.94	□□□□□ -0.18
HMGA2-209	ENST00000539662	FAM177B	A6PVY3	158 aa		13.93	□□□□□ -0.18
HMGA2-209	ENST00000539662	AIMP1	Q12904	312 aa	Known RBP	13.93	□□□□□ -0.18
HMGA2-209	ENST00000539662	HDGFL1	Q5TGJ6	251 aa		13.93	□□□□□ -0.18
HMGA2-209	ENST00000539662	PRR5L	Q6MZQ0	368 aa		13.93	□□□□□ -0.18
HMGA2-209	ENST00000539662	XAGE3	Q8WTP9	111 aa		13.93	□□□□□ -0.18
HMGA2-209	ENST00000539662	ERBB4	Q15303	1308 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	MAP3K15	Q6ZN16	1313 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	CCER2	I3L3R5	266 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	TCERG1	O14776	1098 aa	Known RBP	13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	TGFB2	P61812	414 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	CALD1	Q05682	793 aa	Known RBP	13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	COPS6	Q7L5N1	327 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	ZNF428	Q96B54	188 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	SETDB2	Q96T68	719 aa		13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	COL11A2	P13942	1736 aa	Predicted RBP	13.92	□□□□□ -0.18
HMGA2-209	ENST00000539662	GPT	P24298	496 aa		13.91	□□□□□ -0.18
HMGA2-209	ENST00000539662	CLEC4G	Q6UXB4	293 aa		13.91	□□□□□ -0.18
HMGA2-209	ENST00000539662	DDX21	Q9NR30	783 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
HMGA2-209	ENST00000539662	NIP7	Q9Y221	180 aa	Known RBP eCLIP	13.91	□□□□□ -0.18
HMGA2-209	ENST00000539662	UBN2	Q6ZU65	1347 aa		13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	ZNF521	Q96K83	1311 aa		13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	FANCI	Q9NVI1	1328 aa		13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	HOXB7	P09629	217 aa		13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	NCBP3	Q53F19	620 aa	Known RBP	13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	KIF6	Q6ZMV9	814 aa		13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	PHAX	Q9H814	394 aa	Known RBP	13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	DLEC1	Q9Y238	1755 aa		13.9	□□□□□ -0.18
HMGA2-209	ENST00000539662	IL16	Q14005	1332 aa		13.9	□□□□□ -0.19
HMGA2-209	ENST00000539662	TNRC6C	Q9HCJ0	1690 aa	Known RBP	13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	DCAF8L1	A6NGE4	600 aa		13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	ERVV-1	B6SEH8	477 aa		13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	WDR63	Q8IWG1	891 aa		13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	ZNF34	Q8IZ26	560 aa		13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	BCS1L	Q9Y276	419 aa		13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	ZNF652	Q9Y2D9	606 aa		13.89	□□□□□ -0.19
HMGA2-209	ENST00000539662	ANKRD36C	Q5JPF3	1778 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	CHD4	Q14839	1912 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	EXOSC9	Q06265	439 aa	Known RBP	13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	SUSD4	Q5VX71	490 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	GIGYF2	Q6Y7W6	1299 aa	Known RBP	13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	NBPF5P	Q86XG9	351 aa	Predicted RBP	13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	NUTM1	Q86Y26	1132 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	C2CD5	Q86YS7	1000 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	CNBD1	Q8NA66	436 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	DBF4	Q9UBU7	674 aa	Predicted RBP	13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	ATP10D	Q9P241	1426 aa		13.88	□□□□□ -0.19
HMGA2-209	ENST00000539662	ABCC12	Q96J65	1359 aa		13.87	□□□□□ -0.19
HMGA2-209	ENST00000539662	CACNA1S	Q13698	1873 aa		13.87	□□□□□ -0.19
HMGA2-209	ENST00000539662	ARFGEF2	Q9Y6D5	1785 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	ARFGEF1	Q9Y6D6	1849 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	RGL2	O15211	777 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	TWISTNB	Q3B726	338 aa	Predicted RBP	13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	ERFE	Q4G0M1	354 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	G2E3	Q7L622	706 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	SYNE4	Q8N205	404 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	BRIP1	Q9BX63	1249 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	PIM2	Q9P1W9	311 aa		13.86	□□□□□ -0.19
HMGA2-209	ENST00000539662	VAMP4	O75379	141 aa		13.85	□□□□□ -0.19
HMGA2-209	ENST00000539662	YY1	P25490	414 aa		13.85	□□□□□ -0.19
HMGA2-209	ENST00000539662	C3orf67	Q6ZVT6	689 aa		13.85	□□□□□ -0.19
HMGA2-209	ENST00000539662	CDCA7L	Q96GN5	454 aa		13.85	□□□□□ -0.19
HMGA2-209	ENST00000539662	ATP5J2-PTCD1	G3V325	749 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662		H0YIN7	160 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	GRIN3B	O60391	1043 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	NTSR2	O95665	410 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	TPTE2	Q6XPS3	522 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	ANKRD13D	Q6ZTN6	518 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	SLC51A	Q86UW1	340 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	HYPK	Q9NX55	129 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	SLX4	Q8IY92	1834 aa		13.84	□□□□□ -0.19
HMGA2-209	ENST00000539662	NPHP1	O15259	732 aa		13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	ST5	P78524	1137 aa		13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	GOLGA2	Q08379	1002 aa		13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	TCIRG1	Q13488	830 aa		13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	DALRD3	Q5D0E6	543 aa	Known RBP	13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	NLRP10	Q86W26	655 aa		13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	PLBD2	Q8NHP8	589 aa		13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	ZNF622	Q969S3	477 aa	Known RBP eCLIP	13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	ZNF219	Q9P2Y4	722 aa	Predicted RBP	13.83	□□□□□ -0.2
HMGA2-209	ENST00000539662	SRGN	P10124	158 aa		13.82	□□□□□ -0.2
HMGA2-209	ENST00000539662	PDE6B	P35913	854 aa		13.82	□□□□□ -0.2
HMGA2-209	ENST00000539662	CCDC30	Q5VVM6	783 aa		13.82	□□□□□ -0.2
HMGA2-209	ENST00000539662	LAMB2	P55268	1798 aa		13.81	□□□□□ -0.2
HMGA2-209	ENST00000539662	KLRG2	A4D1S0	409 aa	Predicted RBP	13.81	□□□□□ -0.2
HMGA2-209	ENST00000539662	SLC4A2	P04920	1241 aa		13.81	□□□□□ -0.2
HMGA2-209	ENST00000539662	PRELP	P51888	382 aa		13.81	□□□□□ -0.2
HMGA2-209	ENST00000539662	OLFM4	Q6UX06	510 aa		13.81	□□□□□ -0.2
HMGA2-209	ENST00000539662	ARHGAP27	Q6ZUM4	889 aa		13.81	□□□□□ -0.2

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