RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 SBF1O95248 1867 aa11.22□□□□□ -0.61
USP28-203ENST00000537490 SCN7AQ01118 1682 aa11.22□□□□□ -0.61
USP28-203ENST00000537490 HLFQ16534 295 aa11.22□□□□□ -0.61
USP28-203ENST00000537490 NBPF5PQ86XG9 351 aaPredicted RBP11.22□□□□□ -0.61
USP28-203ENST00000537490 CNKSR1Q969H4 720 aa11.22□□□□□ -0.61
USP28-203ENST00000537490 MASTLQ96GX5 879 aa11.22□□□□□ -0.61
USP28-203ENST00000537490 THUMPD2Q9BTF0 503 aaKnown RBP11.22□□□□□ -0.61
USP28-203ENST00000537490 NIP7Q9Y221 180 aaKnown RBP eCLIP11.22□□□□□ -0.61
USP28-203ENST00000537490 ZNF652Q9Y2D9 606 aa11.22□□□□□ -0.61
USP28-203ENST00000537490 ANKRD31Q8N7Z5 1873 aa11.21□□□□□ -0.61
USP28-203ENST00000537490 FAM177BA6PVY3 158 aa11.21□□□□□ -0.61
USP28-203ENST00000537490 POTECB2RU33 542 aa11.21□□□□□ -0.61
USP28-203ENST00000537490 NEFMP07197 916 aa11.21□□□□□ -0.61
USP28-203ENST00000537490 VEGFAP15692 232 aaPredicted RBP11.21□□□□□ -0.61
USP28-203ENST00000537490 EIF4A1P60842 406 aaKnown RBP11.21□□□□□ -0.61
USP28-203ENST00000537490 NFE2L2Q16236 605 aa11.21□□□□□ -0.61
USP28-203ENST00000537490 PRPF40BQ6NWY9 871 aaKnown RBP11.21□□□□□ -0.61
USP28-203ENST00000537490 NGEFQ8N5V2 710 aa11.21□□□□□ -0.61
USP28-203ENST00000537490 PNISRQ8TF01 805 aaKnown RBP11.21□□□□□ -0.61
USP28-203ENST00000537490 DLEC1Q9Y238 1755 aa11.21□□□□□ -0.62
USP28-203ENST00000537490 KLRG2A4D1S0 409 aaPredicted RBP11.2□□□□□ -0.62
USP28-203ENST00000537490 RGL2O15211 777 aa11.2□□□□□ -0.62
USP28-203ENST00000537490 ERFEQ4G0M1 354 aa11.2□□□□□ -0.62
USP28-203ENST00000537490 IFFO2Q5TF58 517 aa11.2□□□□□ -0.62
USP28-203ENST00000537490 TPTE2Q6XPS3 522 aa11.2□□□□□ -0.62
USP28-203ENST00000537490 SMC1BQ8NDV3 1235 aa11.2□□□□□ -0.62
USP28-203ENST00000537490 C7orf43Q8WVR3 580 aa11.2□□□□□ -0.62
USP28-203ENST00000537490 LTBP3Q9NS15 1303 aa11.19□□□□□ -0.62
USP28-203ENST00000537490 NPR1P16066 1061 aa11.19□□□□□ -0.62
USP28-203ENST00000537490 DPY19L2Q6NUT2 758 aa11.19□□□□□ -0.62
USP28-203ENST00000537490 TTLL7Q6ZT98 887 aa11.19□□□□□ -0.62
USP28-203ENST00000537490 TAOK3Q9H2K8 898 aa11.19□□□□□ -0.62
USP28-203ENST00000537490 RRP7AQ9Y3A4 280 aaKnown RBP11.19□□□□□ -0.62
USP28-203ENST00000537490 COL11A2P13942 1736 aaPredicted RBP11.18□□□□□ -0.62
USP28-203ENST00000537490 KLRG1Q96E93 195 aa11.18□□□□□ -0.62
USP28-203ENST00000537490 PNNQ9H307 717 aaKnown RBP11.18□□□□□ -0.62
USP28-203ENST00000537490 BCORQ6W2J9 1755 aa11.18□□□□□ -0.62
USP28-203ENST00000537490 MAPK8IP3Q9UPT6 1336 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 SLX4Q8IY92 1834 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 ERVV-1B6SEH8 477 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 DDNO94850 711 aaPredicted RBP11.17□□□□□ -0.62
USP28-203ENST00000537490 MYL6BP14649 208 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 CCDC93Q567U6 631 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 SOGA3Q5TF21 947 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 OLFM4Q6UX06 510 aa11.17□□□□□ -0.62
USP28-203ENST00000537490 MAP3K15Q6ZN16 1313 aa11.16□□□□□ -0.62
USP28-203ENST00000537490 GTF2E1P29083 439 aaPredicted RBP11.16□□□□□ -0.62
USP28-203ENST00000537490 RIPK4P57078 832 aa11.16□□□□□ -0.62
USP28-203ENST00000537490 RALBP1Q15311 655 aa11.16□□□□□ -0.62
USP28-203ENST00000537490 NUTM1Q86Y26 1132 aa11.16□□□□□ -0.62
USP28-203ENST00000537490 TNRC6CQ9HCJ0 1690 aaKnown RBP11.16□□□□□ -0.62
USP28-203ENST00000537490 CEP350Q5VT06 3117 aa11.15□□□□□ -0.62
USP28-203ENST00000537490 GPTP24298 496 aa11.15□□□□□ -0.62
USP28-203ENST00000537490 FKBP4Q02790 459 aaKnown RBP eCLIP11.15□□□□□ -0.62
USP28-203ENST00000537490 DDX10Q13206 875 aaKnown RBP11.15□□□□□ -0.62
USP28-203ENST00000537490 SUSD4Q5VX71 490 aa11.15□□□□□ -0.62
USP28-203ENST00000537490 JMYQ8N9B5 988 aa11.15□□□□□ -0.62
USP28-203ENST00000537490 ZBTB3Q9H5J0 574 aa11.15□□□□□ -0.62
USP28-203ENST00000537490 ZNF277Q9NRM2 450 aaPredicted RBP11.15□□□□□ -0.62
USP28-203ENST00000537490 TSPYL4Q9UJ04 414 aa11.15□□□□□ -0.62
USP28-203ENST00000537490 ABCC12Q96J65 1359 aa11.15□□□□□ -0.63
USP28-203ENST00000537490 FER1L6Q2WGJ9 1857 aa11.15□□□□□ -0.63
USP28-203ENST00000537490 CCDC88AQ3V6T2 1871 aa11.15□□□□□ -0.63
USP28-203ENST00000537490 UBN2Q6ZU65 1347 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 POTEIP0CG38 1075 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 POTEJP0CG39 1038 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 EIF2S2P20042 333 aaKnown RBP11.14□□□□□ -0.63
USP28-203ENST00000537490 ALDH1B1P30837 517 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 TMPOP42166 694 aaKnown RBP11.14□□□□□ -0.63
USP28-203ENST00000537490 PDIA6Q15084 440 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 KIF6Q6ZMV9 814 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 LRP10Q7Z4F1 713 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 ZNF34Q8IZ26 560 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 NYXQ9GZU5 481 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 WDR90Q96KV7 1748 aa11.14□□□□□ -0.63
USP28-203ENST00000537490 TIAM2Q8IVF5 1701 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 ANXA1P04083 346 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 CRY2Q49AN0 593 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 GIGYF2Q6Y7W6 1299 aaKnown RBP11.13□□□□□ -0.63
USP28-203ENST00000537490 RTKN2Q8IZC4 609 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 SYNE4Q8N205 404 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 DLG5Q8TDM6 1919 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 KDM3BQ7LBC6 1761 aa11.13□□□□□ -0.63
USP28-203ENST00000537490 ERBB4Q15303 1308 aa11.12□□□□□ -0.63
USP28-203ENST00000537490 PROSER3Q2NL68 480 aa11.12□□□□□ -0.63
USP28-203ENST00000537490 CHADLQ6NUI6 762 aa11.12□□□□□ -0.63
USP28-203ENST00000537490 CCDC146Q8IYE0 955 aa11.12□□□□□ -0.63
USP28-203ENST00000537490 ZNF541Q9H0D2 1346 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 NTSR2O95665 410 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 HOXA10P31260 410 aaPredicted RBP11.11□□□□□ -0.63
USP28-203ENST00000537490 IARSP41252 1262 aaKnown RBP11.11□□□□□ -0.63
USP28-203ENST00000537490 NEUROD2Q15784 382 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 C3orf67Q6ZVT6 689 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 SLC51AQ86UW1 340 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 NECTIN2Q92692 538 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 L3MBTL3Q96JM7 780 aaPredicted RBP11.11□□□□□ -0.63
USP28-203ENST00000537490 TAF1DQ9H5J8 278 aaPredicted RBP11.11□□□□□ -0.63
USP28-203ENST00000537490 BABAM1Q9NWV8 329 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 LAMB4A4D0S4 1761 aa11.11□□□□□ -0.63
USP28-203ENST00000537490 MYBBP1AQ9BQG0 1328 aaKnown RBP11.1□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms