RNA–Protein interactions for RNA: ENST00000537408.1

CLSTN3-207, Transcript of calsyntenin 3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLSTN3, Length 4,296 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-207ENST00000537408 ZNF330Q9Y3S2 320 aaPredicted RBP12.86□□□□□ -0.35
CLSTN3-207ENST00000537408 PLEKHG3A1L390 1219 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 UNC5CLQ8IV45 518 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 WDR63Q8IWG1 891 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 TTC5Q8N0Z6 440 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 KCNF1Q9H3M0 494 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 DCCP43146 1447 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 ADAMTS13Q76LX8 1427 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 POLR3GO15318 223 aaPredicted RBP12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 SLU7O95391 586 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 FAM98CQ17RN3 349 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 FBXO38Q6PIJ6 1188 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 ZGPATQ8N5A5 531 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 DIP2AQ14689 1571 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 IPO8O15397 1037 aaKnown RBP12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 POLKQ9UBT6 870 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 MYOM2P54296 1465 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 IVLP07476 585 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 MX1P20591 662 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 PTGS1P23219 599 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 MCM2P49736 904 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 ELF2Q15723 593 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 TMCO3Q6UWJ1 677 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 NME9Q86XW9 330 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 GCC1Q96CN9 775 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 FAM53CQ9NYF3 392 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 DONSONQ9NYP3 566 aa12.85□□□□□ -0.35
CLSTN3-207ENST00000537408 KIF2AO00139 706 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 CT47B1P0C2W7 299 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 RBM28Q9NW13 759 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 RRP15Q9Y3B9 282 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 PTCH1Q13635 1447 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 SPATA31A3Q5VYP0 1347 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 NAA30Q147X3 362 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 PTPN14Q15678 1187 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 CT47A1Q5JQC4 288 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 GOLGA5Q8TBA6 731 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 ST7Q9NRC1 585 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 SPHKAPQ2M3C7 1700 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 PRR29P0C7W0 189 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 GRIPAP1Q4V328 841 aa12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 INTS3Q68E01 1043 aaKnown RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 TMX4Q9H1E5 349 aaPredicted RBP12.84□□□□□ -0.35
CLSTN3-207ENST00000537408 ZNF215Q9UL58 517 aaPredicted RBP12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 IQGAP1P46940 1657 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 IQSEC2Q5JU85 1478 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 GOLIM4O00461 696 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 ATP2B1P20020 1258 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 FILIP1Q7Z7B0 1213 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 TCP11L2Q8N4U5 519 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 C1orf167Q5SNV9 1468 aa12.83□□□□□ -0.36
CLSTN3-207ENST00000537408 ANKARQ7Z5J8 1434 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 TRIM66O15016 1216 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 CCDC192P0DO97 292 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 MCCP23508 829 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 NOL12Q9UGY1 213 aaKnown RBP eCLIP12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 LRRC7Q96NW7 1537 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 GYS2P54840 703 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 ZDHHC9Q9Y397 364 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 ATP6V1AP38606 617 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 TPRNQ4KMQ1 711 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 SRLQ86TD4 932 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 PPM1EQ8WY54 764 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 CXorf56Q9H5V9 222 aa12.82□□□□□ -0.36
CLSTN3-207ENST00000537408 WDR33Q9C0J8 1336 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 ZRSR1Q15695 479 aaKnown RBP12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 EP400NLQ6ZTU2 488 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 CCDC186Q7Z3E2 898 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 ANKRD20A12PQ8NF67 263 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 ANKRD24Q8TF21 1146 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 RUNDC1Q96C34 613 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 ZRANB1Q9UGI0 708 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 BRD1O95696 1058 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 MAGEA9P43362 315 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 KRT27Q7Z3Y8 459 aa12.81□□□□□ -0.36
CLSTN3-207ENST00000537408 USP48Q86UV5 1035 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 CLTCL1P53675 1640 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 FOXD4L6Q3SYB3 417 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 FOXD4L3Q6VB84 417 aaPredicted RBP12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 FBXO18Q8NFZ0 1043 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 RAD50Q92878 1312 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 ALKQ9UM73 1620 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 NEMFO60524 1076 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 MAP2K2P36507 400 aa12.8□□□□□ -0.36
CLSTN3-207ENST00000537408 ATF7IPQ6VMQ6 1270 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 EGFL6Q8IUX8 553 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 ATP6V1DQ9Y5K8 247 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 HMOX1P09601 288 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 USP8P40818 1118 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 TRIM5Q9C035 493 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 VWDEQ8N2E2 1590 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 NBPF20Q3BBV1 942 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 MCTP2Q6DN12 878 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 SUFUQ9UMX1 484 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 DEPDC5O75140 1603 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 IL2RBP14784 551 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 RRS1Q15050 365 aaKnown RBP12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 TESK2Q96S53 571 aa12.79□□□□□ -0.36
CLSTN3-207ENST00000537408 ZNF853P0CG23 659 aa12.78□□□□□ -0.36
CLSTN3-207ENST00000537408 FAM196AQ6ZSG2 479 aa12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms