RNA–Protein interactions for RNA: ENST00000535399.1

SFSWAP-204, Transcript of splicing factor SWAP, humanhuman

TSL 2

Gene SFSWAP, Length 778 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-204ENST00000535399 C10orf71Q711Q0 1435 aa29.41■■■□□ 2.3
SFSWAP-204ENST00000535399 MAP3K15Q6ZN16 1313 aa29.41■■■□□ 2.3
SFSWAP-204ENST00000535399 ERVV-1B6SEH8 477 aa29.4■■■□□ 2.3
SFSWAP-204ENST00000535399 ZNF652Q9Y2D9 606 aa29.4■■■□□ 2.3
SFSWAP-204ENST00000535399 BCORQ6W2J9 1755 aa29.39■■■□□ 2.3
SFSWAP-204ENST00000535399 KIF6Q6ZMV9 814 aa29.39■■■□□ 2.3
SFSWAP-204ENST00000535399 DBF4Q9UBU7 674 aaPredicted RBP29.39■■■□□ 2.3
SFSWAP-204ENST00000535399 SERPINB2P05120 415 aa29.38■■■□□ 2.29
SFSWAP-204ENST00000535399 GOLGA2Q08379 1002 aa29.37■■■□□ 2.29
SFSWAP-204ENST00000535399 COPS6Q7L5N1 327 aa29.37■■■□□ 2.29
SFSWAP-204ENST00000535399 XAGE3Q8WTP9 111 aa29.37■■■□□ 2.29
SFSWAP-204ENST00000535399 SETDB2Q96T68 719 aa29.37■■■□□ 2.29
SFSWAP-204ENST00000535399 ZBTB3Q9H5J0 574 aa29.37■■■□□ 2.29
SFSWAP-204ENST00000535399 MYH16Q9H6N6 1097 aa29.37■■■□□ 2.29
SFSWAP-204ENST00000535399 TWISTNBQ3B726 338 aaPredicted RBP29.36■■■□□ 2.29
SFSWAP-204ENST00000535399 CARMIL3Q8ND23 1372 aa29.36■■■□□ 2.29
SFSWAP-204ENST00000535399 EXOSC9Q06265 439 aaKnown RBP29.34■■■□□ 2.29
SFSWAP-204ENST00000535399 AIMP1Q12904 312 aaKnown RBP29.34■■■□□ 2.29
SFSWAP-204ENST00000535399 CCDC30Q5VVM6 783 aa29.34■■■□□ 2.29
SFSWAP-204ENST00000535399 HYPKQ9NX55 129 aa29.34■■■□□ 2.29
SFSWAP-204ENST00000535399 CHMP4AQ9BY43 222 aa29.33■■■□□ 2.29
SFSWAP-204ENST00000535399 NIP7Q9Y221 180 aaKnown RBP eCLIP29.33■■■□□ 2.29
SFSWAP-204ENST00000535399 GIGYF2Q6Y7W6 1299 aaKnown RBP29.32■■■□□ 2.28
SFSWAP-204ENST00000535399 PXDNLA1KZ92 1463 aa29.31■■■□□ 2.28
SFSWAP-204ENST00000535399 ATP10DQ9P241 1426 aa29.31■■■□□ 2.28
SFSWAP-204ENST00000535399 TGFB2P61812 414 aa29.31■■■□□ 2.28
SFSWAP-204ENST00000535399 NRXN2Q9P2S2 1712 aa29.31■■■□□ 2.28
SFSWAP-204ENST00000535399 E9PSI1 815 aa29.3■■■□□ 2.28
SFSWAP-204ENST00000535399 VAMP4O75379 141 aa29.3■■■□□ 2.28
SFSWAP-204ENST00000535399 KIF13BQ9NQT8 1826 aa29.29■■■□□ 2.28
SFSWAP-204ENST00000535399 SLFN5Q08AF3 891 aa29.29■■■□□ 2.28
SFSWAP-204ENST00000535399 PRR5LQ6MZQ0 368 aa29.29■■■□□ 2.28
SFSWAP-204ENST00000535399 A0A0G2JLW4 131 aa29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 DPEP1P16444 411 aa29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 ZNF34Q8IZ26 560 aa29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 PLBD2Q8NHP8 589 aa29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 CDCA7LQ96GN5 454 aa29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 PHAXQ9H814 394 aaKnown RBP29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 AFDNP55196 1824 aaKnown RBP29.27■■■□□ 2.28
SFSWAP-204ENST00000535399 TCERG1O14776 1098 aaKnown RBP29.26■■■□□ 2.27
SFSWAP-204ENST00000535399 NBPF5PQ86XG9 351 aaPredicted RBP29.26■■■□□ 2.27
SFSWAP-204ENST00000535399 CNBD1Q8NA66 436 aa29.26■■■□□ 2.27
SFSWAP-204ENST00000535399 UBN2Q6ZU65 1347 aa29.25■■■□□ 2.27
SFSWAP-204ENST00000535399 GPTP24298 496 aa29.25■■■□□ 2.27
SFSWAP-204ENST00000535399 ANKRD13DQ6ZTN6 518 aa29.25■■■□□ 2.27
SFSWAP-204ENST00000535399 CCDC24Q8N4L8 307 aa29.25■■■□□ 2.27
SFSWAP-204ENST00000535399 KCNA3P22001 575 aa29.24■■■□□ 2.27
SFSWAP-204ENST00000535399 STK31Q9BXU1 1019 aa29.24■■■□□ 2.27
SFSWAP-204ENST00000535399 KIAA1551Q9HCM1 1747 aa29.24■■■□□ 2.27
SFSWAP-204ENST00000535399 DCAF8L1A6NGE4 600 aa29.23■■■□□ 2.27
SFSWAP-204ENST00000535399 GPR162Q16538 588 aa29.23■■■□□ 2.27
SFSWAP-204ENST00000535399 TRMT2AQ8IZ69 625 aaKnown RBP29.23■■■□□ 2.27
SFSWAP-204ENST00000535399 BRIP1Q9BX63 1249 aa29.23■■■□□ 2.27
SFSWAP-204ENST00000535399 FAM177BA6PVY3 158 aa29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 YBX3P16989 372 aaKnown RBP eCLIP29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 CHRNA5P30532 468 aa29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 TCIRG1Q13488 830 aa29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 HSP90AB3PQ58FF7 597 aa29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 SUSD4Q5VX71 490 aa29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 TPTE2Q6XPS3 522 aa29.22■■■□□ 2.27
SFSWAP-204ENST00000535399 ST5P78524 1137 aa29.21■■■□□ 2.27
SFSWAP-204ENST00000535399 PELP1Q8IZL8 1130 aaKnown RBP29.21■■■□□ 2.27
SFSWAP-204ENST00000535399 WWC3Q9ULE0 1092 aa29.21■■■□□ 2.27
SFSWAP-204ENST00000535399 NUP98P52948 1817 aa29.21■■■□□ 2.27
SFSWAP-204ENST00000535399 NPHP1O15259 732 aa29.2■■■□□ 2.26
SFSWAP-204ENST00000535399 SLC4A2P04920 1241 aa29.2■■■□□ 2.26
SFSWAP-204ENST00000535399 PARP10Q53GL7 1025 aa29.2■■■□□ 2.26
SFSWAP-204ENST00000535399 IBTKQ9P2D0 1353 aaPredicted RBP29.19■■■□□ 2.26
SFSWAP-204ENST00000535399 HNRNPUQ00839 825 aaKnown RBP eCLIP29.19■■■□□ 2.26
SFSWAP-204ENST00000535399 G2E3Q7L622 706 aa29.19■■■□□ 2.26
SFSWAP-204ENST00000535399 NYXQ9GZU5 481 aa29.19■■■□□ 2.26
SFSWAP-204ENST00000535399 GOLGB1Q14789 3259 aaKnown RBP29.18■■■□□ 2.26
SFSWAP-204ENST00000535399 NTSR2O95665 410 aa29.17■■■□□ 2.26
SFSWAP-204ENST00000535399 PDE6BP35913 854 aa29.17■■■□□ 2.26
SFSWAP-204ENST00000535399 RIC3Q7Z5B4 369 aa29.17■■■□□ 2.26
SFSWAP-204ENST00000535399 NLRP10Q86W26 655 aa29.17■■■□□ 2.26
SFSWAP-204ENST00000535399 C2CD5Q86YS7 1000 aa29.17■■■□□ 2.26
SFSWAP-204ENST00000535399 ISCA1Q9BUE6 129 aa29.17■■■□□ 2.26
SFSWAP-204ENST00000535399 N4BP2Q86UW6 1770 aaPredicted RBP29.16■■■□□ 2.26
SFSWAP-204ENST00000535399 NUTM1Q86Y26 1132 aa29.16■■■□□ 2.26
SFSWAP-204ENST00000535399 DDX58O95786 925 aaKnown RBP29.15■■■□□ 2.26
SFSWAP-204ENST00000535399 PPP1R42Q7Z4L9 355 aa29.15■■■□□ 2.26
SFSWAP-204ENST00000535399 PIM2Q9P1W9 311 aa29.15■■■□□ 2.26
SFSWAP-204ENST00000535399 PDZRN3Q9UPQ7 1066 aa29.15■■■□□ 2.26
SFSWAP-204ENST00000535399 ABCC12Q96J65 1359 aa29.14■■■□□ 2.26
SFSWAP-204ENST00000535399 UTRNP46939 3433 aa29.14■■■□□ 2.26
SFSWAP-204ENST00000535399 H0YIN7 160 aa29.14■■■□□ 2.26
SFSWAP-204ENST00000535399 GTF2E1P29083 439 aaPredicted RBP29.14■■■□□ 2.26
SFSWAP-204ENST00000535399 ERFEQ4G0M1 354 aa29.14■■■□□ 2.26
SFSWAP-204ENST00000535399 UTP14AQ9BVJ6 771 aaKnown RBP29.14■■■□□ 2.26
SFSWAP-204ENST00000535399 ANKRD31Q8N7Z5 1873 aa29.13■■■□□ 2.25
SFSWAP-204ENST00000535399 ATP5J2-PTCD1G3V325 749 aa29.13■■■□□ 2.25
SFSWAP-204ENST00000535399 FLIIQ13045 1269 aa29.13■■■□□ 2.25
SFSWAP-204ENST00000535399 KLRG2A4D1S0 409 aaPredicted RBP29.12■■■□□ 2.25
SFSWAP-204ENST00000535399 GRIN3BO60391 1043 aa29.12■■■□□ 2.25
SFSWAP-204ENST00000535399 TRIM28Q13263 835 aaKnown RBP29.12■■■□□ 2.25
SFSWAP-204ENST00000535399 KSR2Q6VAB6 950 aa29.12■■■□□ 2.25
SFSWAP-204ENST00000535399 BCS1LQ9Y276 419 aa29.12■■■□□ 2.25
SFSWAP-204ENST00000535399 ADCY9O60503 1353 aa29.12■■■□□ 2.25
SFSWAP-204ENST00000535399 PI4KAP2A4QPH2 592 aa29.11■■■□□ 2.25
Retrieved 100 of 20,778 RNA–protein pairs in 71.3 ms