RNA–Protein interactions for RNA: ENST00000533946.5

SSBP3-215, Transcript of single stranded DNA binding protein 3, humanhuman

TSL 3

Gene SSBP3, Length 431 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP3-215ENST00000533946 PIM2Q9P1W9 311 aa12.72□□□□□ -0.37
SSBP3-215ENST00000533946 TSPYL4Q9UJ04 414 aa12.72□□□□□ -0.37
SSBP3-215ENST00000533946 LAS1LQ9Y4W2 734 aaKnown RBP12.72□□□□□ -0.37
SSBP3-215ENST00000533946 NUP98P52948 1817 aa12.72□□□□□ -0.37
SSBP3-215ENST00000533946 SLX4Q8IY92 1834 aa12.72□□□□□ -0.37
SSBP3-215ENST00000533946 TNRC6CQ9HCJ0 1690 aaKnown RBP12.71□□□□□ -0.37
SSBP3-215ENST00000533946 A0A087WZG4 1122 aa12.71□□□□□ -0.37
SSBP3-215ENST00000533946 APAF1O14727 1248 aa12.71□□□□□ -0.37
SSBP3-215ENST00000533946 EIF2S2P20042 333 aaKnown RBP12.71□□□□□ -0.37
SSBP3-215ENST00000533946 DALRD3Q5D0E6 543 aaKnown RBP12.71□□□□□ -0.37
SSBP3-215ENST00000533946 RUNDC1Q96C34 613 aa12.71□□□□□ -0.37
SSBP3-215ENST00000533946 CCDC88AQ3V6T2 1871 aa12.71□□□□□ -0.37
SSBP3-215ENST00000533946 C3orf67Q6ZVT6 689 aa12.7□□□□□ -0.38
SSBP3-215ENST00000533946 ZBTB3Q9H5J0 574 aa12.7□□□□□ -0.38
SSBP3-215ENST00000533946 UBN2Q6ZU65 1347 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 ZNF316A6NFI3 1004 aaPredicted RBP12.69□□□□□ -0.38
SSBP3-215ENST00000533946 CHL1O00533 1208 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 GPTP24298 496 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 WDR43Q15061 677 aaKnown RBP eCLIP12.69□□□□□ -0.38
SSBP3-215ENST00000533946 C9orf131Q5VYM1 1079 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 NUTM1Q86Y26 1132 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 SYNE4Q8N205 404 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 SETDB2Q96T68 719 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 ABCC12Q96J65 1359 aa12.69□□□□□ -0.38
SSBP3-215ENST00000533946 NFKBIEO00221 500 aa12.68□□□□□ -0.38
SSBP3-215ENST00000533946 NEFMP07197 916 aa12.68□□□□□ -0.38
SSBP3-215ENST00000533946 C1QTNF8P60827 252 aa12.68□□□□□ -0.38
SSBP3-215ENST00000533946 ZNF622Q969S3 477 aaKnown RBP eCLIP12.68□□□□□ -0.38
SSBP3-215ENST00000533946 NMRK2Q9NPI5 230 aa12.68□□□□□ -0.38
SSBP3-215ENST00000533946 NIP7Q9Y221 180 aaKnown RBP eCLIP12.68□□□□□ -0.38
SSBP3-215ENST00000533946 KIF3CO14782 793 aa12.67□□□□□ -0.38
SSBP3-215ENST00000533946 C21orf2O43822 256 aa12.67□□□□□ -0.38
SSBP3-215ENST00000533946 PNISRQ8TF01 805 aaKnown RBP12.67□□□□□ -0.38
SSBP3-215ENST00000533946 H0YIN7 160 aa12.66□□□□□ -0.38
SSBP3-215ENST00000533946 ERFEQ4G0M1 354 aa12.66□□□□□ -0.38
SSBP3-215ENST00000533946 SUSD4Q5VX71 490 aa12.66□□□□□ -0.38
SSBP3-215ENST00000533946 NBPF5PQ86XG9 351 aaPredicted RBP12.66□□□□□ -0.38
SSBP3-215ENST00000533946 CNBD1Q8NA66 436 aa12.66□□□□□ -0.38
SSBP3-215ENST00000533946 BRIP1Q9BX63 1249 aa12.66□□□□□ -0.38
SSBP3-215ENST00000533946 MBIPQ9NS73 344 aa12.66□□□□□ -0.38
SSBP3-215ENST00000533946 MAP3K15Q6ZN16 1313 aa12.65□□□□□ -0.38
SSBP3-215ENST00000533946 ELL2O00472 640 aaPredicted RBP12.65□□□□□ -0.38
SSBP3-215ENST00000533946 ZNF853P0CG23 659 aa12.65□□□□□ -0.38
SSBP3-215ENST00000533946 SRGNP10124 158 aa12.65□□□□□ -0.38
SSBP3-215ENST00000533946 AIMP1Q12904 312 aaKnown RBP12.65□□□□□ -0.38
SSBP3-215ENST00000533946 TTLL6Q8N841 843 aa12.65□□□□□ -0.38
SSBP3-215ENST00000533946 PNNQ9H307 717 aaKnown RBP12.65□□□□□ -0.38
SSBP3-215ENST00000533946 RNF181Q9P0P0 153 aa12.65□□□□□ -0.38
SSBP3-215ENST00000533946 COL4A1P02462 1669 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 TAF1P21675 1872 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 FER1L6Q2WGJ9 1857 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 CLEC4GQ6UXB4 293 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 COPS6Q7L5N1 327 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 C8orf58Q8NAV2 365 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 XAGE3Q8WTP9 111 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 GPBP1L1Q9HC44 474 aaPredicted RBP12.64□□□□□ -0.39
SSBP3-215ENST00000533946 CHPF2Q9P2E5 772 aa12.64□□□□□ -0.39
SSBP3-215ENST00000533946 TCERG1O14776 1098 aaKnown RBP12.63□□□□□ -0.39
SSBP3-215ENST00000533946 ZEB1P37275 1124 aaPredicted RBP12.63□□□□□ -0.39
SSBP3-215ENST00000533946 PRPF40BQ6NWY9 871 aaKnown RBP12.63□□□□□ -0.39
SSBP3-215ENST00000533946 ZNF34Q8IZ26 560 aa12.63□□□□□ -0.39
SSBP3-215ENST00000533946 TSPYL6Q8N831 410 aa12.63□□□□□ -0.39
SSBP3-215ENST00000533946 C7orf43Q8WVR3 580 aa12.63□□□□□ -0.39
SSBP3-215ENST00000533946 TSR2Q969E8 191 aaKnown RBP12.63□□□□□ -0.39
SSBP3-215ENST00000533946 SALL2Q9Y467 1007 aaPredicted RBP12.63□□□□□ -0.39
SSBP3-215ENST00000533946 DUSP27Q5VZP5 1158 aa12.62□□□□□ -0.39
SSBP3-215ENST00000533946 NPM2Q86SE8 214 aaKnown RBP12.62□□□□□ -0.39
SSBP3-215ENST00000533946 PCNTO95613 3336 aa12.62□□□□□ -0.39
SSBP3-215ENST00000533946 KLRG2A4D1S0 409 aaPredicted RBP12.61□□□□□ -0.39
SSBP3-215ENST00000533946 ERVV-1B6SEH8 477 aa12.61□□□□□ -0.39
SSBP3-215ENST00000533946 NTSR2O95665 410 aa12.61□□□□□ -0.39
SSBP3-215ENST00000533946 PDE6BP35913 854 aa12.61□□□□□ -0.39
SSBP3-215ENST00000533946 CFAP44Q96MT7 982 aa12.61□□□□□ -0.39
SSBP3-215ENST00000533946 ARFGEF2Q9Y6D5 1785 aa12.61□□□□□ -0.39
SSBP3-215ENST00000533946 COL4A5P29400 1685 aa12.61□□□□□ -0.39
SSBP3-215ENST00000533946 TIAM2Q8IVF5 1701 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 NPHP1O15259 732 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 ST5P78524 1137 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 LMOD3Q0VAK6 560 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 GIGYF2Q6Y7W6 1299 aaKnown RBP12.6□□□□□ -0.39
SSBP3-215ENST00000533946 KIF6Q6ZMV9 814 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 PHAXQ9H814 394 aaKnown RBP12.6□□□□□ -0.39
SSBP3-215ENST00000533946 RRAGCQ9HB90 399 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 MRS2Q9HD23 443 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 SPINK5Q9NQ38 1064 aaPredicted RBP12.6□□□□□ -0.39
SSBP3-215ENST00000533946 LAMB2P55268 1798 aa12.6□□□□□ -0.39
SSBP3-215ENST00000533946 ANKRD36CQ5JPF3 1778 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 POTECB2RU33 542 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 ATP5J2-PTCD1G3V325 749 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 HCLS1P14317 486 aaPredicted RBP12.59□□□□□ -0.39
SSBP3-215ENST00000533946 STYK1Q6J9G0 422 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 TPTE2Q6XPS3 522 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 JARID2Q92833 1246 aaPredicted RBP12.59□□□□□ -0.39
SSBP3-215ENST00000533946 MASTLQ96GX5 879 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 DDX21Q9NR30 783 aaKnown RBP eCLIP12.59□□□□□ -0.39
SSBP3-215ENST00000533946 BABAM1Q9NWV8 329 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 ZNF652Q9Y2D9 606 aa12.59□□□□□ -0.39
SSBP3-215ENST00000533946 HTRA3P83110 453 aa12.58□□□□□ -0.4
SSBP3-215ENST00000533946 HDGFL1Q5TGJ6 251 aa12.58□□□□□ -0.4
SSBP3-215ENST00000533946 SNED1Q8TER0 1413 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms