RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 SOGA3Q5TF21 947 aa10.87□□□□□ -0.67
NEDD8-207ENST00000533242 ZNF219Q9P2Y4 722 aaPredicted RBP10.87□□□□□ -0.67
NEDD8-207ENST00000533242 IL6STP40189 918 aaPredicted RBP10.86□□□□□ -0.67
NEDD8-207ENST00000533242 CNTNAP1P78357 1384 aa10.86□□□□□ -0.67
NEDD8-207ENST00000533242 DIAPH1O60610 1272 aaKnown RBP10.86□□□□□ -0.67
NEDD8-207ENST00000533242 MKRN1Q9UHC7 482 aaKnown RBP10.86□□□□□ -0.67
NEDD8-207ENST00000533242 DDNO94850 711 aaPredicted RBP10.85□□□□□ -0.67
NEDD8-207ENST00000533242 PNISRQ8TF01 805 aaKnown RBP10.85□□□□□ -0.67
NEDD8-207ENST00000533242 ZNF496Q96IT1 587 aaPredicted RBP10.85□□□□□ -0.67
NEDD8-207ENST00000533242 PRDM10Q9NQV6 1147 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 TBC1D2BQ9UPU7 963 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 ADAMTSL1Q8N6G6 1762 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 PASKQ96RG2 1323 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 IQCA1LA6NCM1 817 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 ST5P78524 1137 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 ZNF790Q6PG37 636 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 LDHDQ86WU2 507 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 CNBD1Q8NA66 436 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 MASTLQ96GX5 879 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 SETDB2Q96T68 719 aa10.85□□□□□ -0.67
NEDD8-207ENST00000533242 CAMTA2O94983 1202 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 SRGNP10124 158 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 TEFQ10587 303 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 PRPF40BQ6NWY9 871 aaKnown RBP10.84□□□□□ -0.67
NEDD8-207ENST00000533242 CCDC24Q8N4L8 307 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 L3MBTL3Q96JM7 780 aaPredicted RBP10.84□□□□□ -0.67
NEDD8-207ENST00000533242 COL3A1P02461 1466 aaPredicted RBP10.84□□□□□ -0.67
NEDD8-207ENST00000533242 FOXN1O15353 648 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 POTEIP0CG38 1075 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 POTEJP0CG39 1038 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 FMNL2Q96PY5 1086 aa10.84□□□□□ -0.67
NEDD8-207ENST00000533242 GNAT3A8MTJ3 354 aa10.83□□□□□ -0.68
NEDD8-207ENST00000533242 NPM2Q86SE8 214 aaKnown RBP10.83□□□□□ -0.68
NEDD8-207ENST00000533242 IL17REQ8NFR9 667 aa10.83□□□□□ -0.68
NEDD8-207ENST00000533242 GAS2L2Q8NHY3 880 aa10.83□□□□□ -0.68
NEDD8-207ENST00000533242 ZNF330Q9Y3S2 320 aaPredicted RBP10.83□□□□□ -0.68
NEDD8-207ENST00000533242 NPHP1O15259 732 aa10.83□□□□□ -0.68
NEDD8-207ENST00000533242 CTCFP49711 727 aaPredicted RBP10.83□□□□□ -0.68
NEDD8-207ENST00000533242 AIDAQ96BJ3 306 aa10.83□□□□□ -0.68
NEDD8-207ENST00000533242 TAF1DQ9H5J8 278 aaPredicted RBP10.83□□□□□ -0.68
NEDD8-207ENST00000533242 RBM19Q9Y4C8 960 aaKnown RBP10.83□□□□□ -0.68
NEDD8-207ENST00000533242 A1BGP04217 495 aa10.82□□□□□ -0.68
NEDD8-207ENST00000533242 CCDC93Q567U6 631 aa10.82□□□□□ -0.68
NEDD8-207ENST00000533242 TMEM88BA6NKF7 163 aa10.81□□□□□ -0.68
NEDD8-207ENST00000533242 PER1O15534 1290 aaPredicted RBP10.81□□□□□ -0.68
NEDD8-207ENST00000533242 DZIP3Q86Y13 1208 aaKnown RBP10.81□□□□□ -0.68
NEDD8-207ENST00000533242 C7orf43Q8WVR3 580 aa10.81□□□□□ -0.68
NEDD8-207ENST00000533242 CEMIPQ8WUJ3 1361 aa10.81□□□□□ -0.68
NEDD8-207ENST00000533242 NPR1P16066 1061 aa10.81□□□□□ -0.68
NEDD8-207ENST00000533242 FKBP4Q02790 459 aaKnown RBP eCLIP10.81□□□□□ -0.68
NEDD8-207ENST00000533242 ITGBL1O95965 494 aaPredicted RBP10.8□□□□□ -0.68
NEDD8-207ENST00000533242 VEGFBP49765 207 aa10.8□□□□□ -0.68
NEDD8-207ENST00000533242 CLEC4GQ6UXB4 293 aa10.8□□□□□ -0.68
NEDD8-207ENST00000533242 RGL2O15211 777 aa10.8□□□□□ -0.68
NEDD8-207ENST00000533242 NBPF5PQ86XG9 351 aaPredicted RBP10.8□□□□□ -0.68
NEDD8-207ENST00000533242 HACL1Q9UJ83 578 aa10.8□□□□□ -0.68
NEDD8-207ENST00000533242 KLRG2A4D1S0 409 aaPredicted RBP10.79□□□□□ -0.68
NEDD8-207ENST00000533242 B4GALNT3Q6L9W6 998 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 ZNF652Q9Y2D9 606 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 MYBBP1AQ9BQG0 1328 aaKnown RBP10.79□□□□□ -0.68
NEDD8-207ENST00000533242 ZNF541Q9H0D2 1346 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 THSD7BQ9C0I4 1608 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 LAMB4A4D0S4 1761 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 U2SURPO15042 1029 aaKnown RBP10.79□□□□□ -0.68
NEDD8-207ENST00000533242 RTKN2Q8IZC4 609 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 WBP1LQ9NX94 342 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 NPC1L1Q9UHC9 1359 aa10.79□□□□□ -0.68
NEDD8-207ENST00000533242 BTBD11A6QL63 1104 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 KCNQ3O43525 872 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 EPHX2P34913 555 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 EAPPQ56P03 285 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-207ENST00000533242 CC2D1BQ5T0F9 858 aaKnown RBP10.78□□□□□ -0.68
NEDD8-207ENST00000533242 PNMA8AQ86V59 439 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-207ENST00000533242 TRPM7Q96QT4 1865 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 RASSF10A6NK89 507 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 ZNF277Q9NRM2 450 aaPredicted RBP10.78□□□□□ -0.68
NEDD8-207ENST00000533242 CLEC11AQ9Y240 323 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 USP16Q9Y5T5 823 aa10.78□□□□□ -0.68
NEDD8-207ENST00000533242 TPTE2Q6XPS3 522 aa10.77□□□□□ -0.69
NEDD8-207ENST00000533242 PPP4R2Q9NY27 417 aa10.77□□□□□ -0.69
NEDD8-207ENST00000533242 NUDCQ9Y266 331 aa10.77□□□□□ -0.69
NEDD8-207ENST00000533242 FZD9O00144 591 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 HSPA8P11142 646 aaKnown RBP10.76□□□□□ -0.69
NEDD8-207ENST00000533242 IARSP41252 1262 aaKnown RBP10.76□□□□□ -0.69
NEDD8-207ENST00000533242 LBX1P52954 281 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 DEFB115Q30KQ5 88 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 NUP98P52948 1817 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 SNRPA1P09661 255 aaKnown RBP10.76□□□□□ -0.69
NEDD8-207ENST00000533242 ALDH1B1P30837 517 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 RALBP1Q15311 655 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 CNTROBQ8N137 903 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 SYNE4Q8N205 404 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 SNED1Q8TER0 1413 aa10.76□□□□□ -0.69
NEDD8-207ENST00000533242 PIP4K2AP48426 406 aaPredicted RBP10.75□□□□□ -0.69
NEDD8-207ENST00000533242 GPC2Q8N158 579 aa10.75□□□□□ -0.69
NEDD8-207ENST00000533242 NIP7Q9Y221 180 aaKnown RBP eCLIP10.75□□□□□ -0.69
NEDD8-207ENST00000533242 LTBP1Q14766 1721 aa10.75□□□□□ -0.69
NEDD8-207ENST00000533242 WDR33Q9C0J8 1336 aaKnown RBP10.75□□□□□ -0.69
NEDD8-207ENST00000533242 MAP2K1Q02750 393 aaPredicted RBP10.75□□□□□ -0.69
NEDD8-207ENST00000533242 PSMD1Q99460 953 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 217.1 ms