RNA–Protein interactions for RNA: ENST00000529288.1

CPSF1-204, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 588 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-204ENST00000529288 RBM46Q8TBY0 533 aaKnown RBP17.17■□□□□ 0.34
CPSF1-204ENST00000529288 CNKSR1Q969H4 720 aa17.17■□□□□ 0.34
CPSF1-204ENST00000529288 NRXN2Q9P2S2 1712 aa17.17■□□□□ 0.34
CPSF1-204ENST00000529288 GTF2E1P29083 439 aaPredicted RBP17.16■□□□□ 0.34
CPSF1-204ENST00000529288 DDX10Q13206 875 aaKnown RBP17.16■□□□□ 0.34
CPSF1-204ENST00000529288 CEP350Q5VT06 3117 aa17.16■□□□□ 0.34
CPSF1-204ENST00000529288 SRGNP10124 158 aa17.15■□□□□ 0.34
CPSF1-204ENST00000529288 MYL6BP14649 208 aa17.15■□□□□ 0.34
CPSF1-204ENST00000529288 HLFQ16534 295 aa17.15■□□□□ 0.34
CPSF1-204ENST00000529288 STYK1Q6J9G0 422 aa17.15■□□□□ 0.34
CPSF1-204ENST00000529288 TPTE2Q6XPS3 522 aa17.15■□□□□ 0.34
CPSF1-204ENST00000529288 MASTLQ96GX5 879 aa17.15■□□□□ 0.34
CPSF1-204ENST00000529288 SCN7AQ01118 1682 aa17.14■□□□□ 0.33
CPSF1-204ENST00000529288 GLTPD2A6NH11 291 aa17.14■□□□□ 0.33
CPSF1-204ENST00000529288 EIF4A1P60842 406 aaKnown RBP17.14■□□□□ 0.33
CPSF1-204ENST00000529288 ERFEQ4G0M1 354 aa17.14■□□□□ 0.33
CPSF1-204ENST00000529288 PRPF40BQ6NWY9 871 aaKnown RBP17.14■□□□□ 0.33
CPSF1-204ENST00000529288 RIPK4P57078 832 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 HTRA3P83110 453 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 RALBP1Q15311 655 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 DPY19L2Q6NUT2 758 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 KIF6Q6ZMV9 814 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 TAOK3Q9H2K8 898 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 TSPYL4Q9UJ04 414 aa17.13■□□□□ 0.33
CPSF1-204ENST00000529288 VEGFAP15692 232 aaPredicted RBP17.12■□□□□ 0.33
CPSF1-204ENST00000529288 FSTL1Q12841 308 aa17.12■□□□□ 0.33
CPSF1-204ENST00000529288 ZC3H4Q9UPT8 1303 aaKnown RBP17.12■□□□□ 0.33
CPSF1-204ENST00000529288 NPR1P16066 1061 aa17.11■□□□□ 0.33
CPSF1-204ENST00000529288 NEUROD2Q15784 382 aa17.11■□□□□ 0.33
CPSF1-204ENST00000529288 TTLL7Q6ZT98 887 aa17.11■□□□□ 0.33
CPSF1-204ENST00000529288 ZBTB3Q9H5J0 574 aa17.11■□□□□ 0.33
CPSF1-204ENST00000529288 EIF2S2P20042 333 aaKnown RBP17.1■□□□□ 0.33
CPSF1-204ENST00000529288 GPTP24298 496 aa17.1■□□□□ 0.33
CPSF1-204ENST00000529288 SOGA3Q5TF21 947 aa17.1■□□□□ 0.33
CPSF1-204ENST00000529288 CCDC146Q8IYE0 955 aa17.1■□□□□ 0.33
CPSF1-204ENST00000529288 SMC1BQ8NDV3 1235 aa17.1■□□□□ 0.33
CPSF1-204ENST00000529288 NUTM1Q86Y26 1132 aa17.09■□□□□ 0.33
CPSF1-204ENST00000529288 ANKRD31Q8N7Z5 1873 aa17.09■□□□□ 0.33
CPSF1-204ENST00000529288 MAP3K15Q6ZN16 1313 aa17.08■□□□□ 0.32
CPSF1-204ENST00000529288 CCDC93Q567U6 631 aa17.08■□□□□ 0.32
CPSF1-204ENST00000529288 OLFM4Q6UX06 510 aa17.08■□□□□ 0.32
CPSF1-204ENST00000529288 NYXQ9GZU5 481 aa17.08■□□□□ 0.32
CPSF1-204ENST00000529288 DLEC1Q9Y238 1755 aa17.07■□□□□ 0.32
CPSF1-204ENST00000529288 ERVV-1B6SEH8 477 aa17.07■□□□□ 0.32
CPSF1-204ENST00000529288 DDNO94850 711 aaPredicted RBP17.07■□□□□ 0.32
CPSF1-204ENST00000529288 TMPOP42166 694 aaKnown RBP17.07■□□□□ 0.32
CPSF1-204ENST00000529288 DNAJC5GQ8N7S2 189 aa17.07■□□□□ 0.32
CPSF1-204ENST00000529288 NECTIN2Q92692 538 aa17.07■□□□□ 0.32
CPSF1-204ENST00000529288 LAS1LQ9Y4W2 734 aaKnown RBP17.07■□□□□ 0.32
CPSF1-204ENST00000529288 SBF1O95248 1867 aa17.06■□□□□ 0.32
CPSF1-204ENST00000529288 MYBBP1AQ9BQG0 1328 aaKnown RBP17.06■□□□□ 0.32
CPSF1-204ENST00000529288 RGL2O15211 777 aa17.06■□□□□ 0.32
CPSF1-204ENST00000529288 LMOD3Q0VAK6 560 aa17.06■□□□□ 0.32
CPSF1-204ENST00000529288 WDR43Q15061 677 aaKnown RBP eCLIP17.06■□□□□ 0.32
CPSF1-204ENST00000529288 ZNF277Q9NRM2 450 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-204ENST00000529288 BCORQ6W2J9 1755 aa17.06■□□□□ 0.32
CPSF1-204ENST00000529288 COL11A2P13942 1736 aaPredicted RBP17.06■□□□□ 0.32
CPSF1-204ENST00000529288 LTBP3Q9NS15 1303 aa17.05■□□□□ 0.32
CPSF1-204ENST00000529288 ANXA1P04083 346 aa17.05■□□□□ 0.32
CPSF1-204ENST00000529288 ALDH1B1P30837 517 aa17.05■□□□□ 0.32
CPSF1-204ENST00000529288 C7orf43Q8WVR3 580 aa17.05■□□□□ 0.32
CPSF1-204ENST00000529288 KLRG2A4D1S0 409 aaPredicted RBP17.04■□□□□ 0.32
CPSF1-204ENST00000529288 POTECB2RU33 542 aa17.04■□□□□ 0.32
CPSF1-204ENST00000529288 TCERG1O14776 1098 aaKnown RBP17.04■□□□□ 0.32
CPSF1-204ENST00000529288 SUSD4Q5VX71 490 aa17.04■□□□□ 0.32
CPSF1-204ENST00000529288 RPGRQ92834 1020 aaKnown RBP17.04■□□□□ 0.32
CPSF1-204ENST00000529288 FKBP4Q02790 459 aaKnown RBP eCLIP17.03■□□□□ 0.32
CPSF1-204ENST00000529288 AIMP1Q12904 312 aaKnown RBP17.03■□□□□ 0.32
CPSF1-204ENST00000529288 RTKN2Q8IZC4 609 aa17.03■□□□□ 0.32
CPSF1-204ENST00000529288 SLX4Q8IY92 1834 aa17.03■□□□□ 0.32
CPSF1-204ENST00000529288 ABCC12Q96J65 1359 aa17.02■□□□□ 0.32
CPSF1-204ENST00000529288 UBN2Q6ZU65 1347 aa17.02■□□□□ 0.32
CPSF1-204ENST00000529288 TNRC6CQ9HCJ0 1690 aaKnown RBP17.02■□□□□ 0.32
CPSF1-204ENST00000529288 SYNE4Q8N205 404 aa17.02■□□□□ 0.32
CPSF1-204ENST00000529288 KLRG1Q96E93 195 aa17.02■□□□□ 0.32
CPSF1-204ENST00000529288 DLG5Q8TDM6 1919 aa17.02■□□□□ 0.31
CPSF1-204ENST00000529288 ERBB4Q15303 1308 aa17.01■□□□□ 0.31
CPSF1-204ENST00000529288 PROSER3Q2NL68 480 aa17.01■□□□□ 0.31
CPSF1-204ENST00000529288 GIGYF2Q6Y7W6 1299 aaKnown RBP17.01■□□□□ 0.31
CPSF1-204ENST00000529288 PPP1R42Q7Z4L9 355 aa17.01■□□□□ 0.31
CPSF1-204ENST00000529288 RUNDC1Q96C34 613 aa17.01■□□□□ 0.31
CPSF1-204ENST00000529288 TIAM2Q8IVF5 1701 aa17.01■□□□□ 0.31
CPSF1-204ENST00000529288 KDM3BQ7LBC6 1761 aa17■□□□□ 0.31
CPSF1-204ENST00000529288 PDIA6Q15084 440 aa17■□□□□ 0.31
CPSF1-204ENST00000529288 ZNF34Q8IZ26 560 aa17■□□□□ 0.31
CPSF1-204ENST00000529288 RBM17Q96I25 401 aaKnown RBP17■□□□□ 0.31
CPSF1-204ENST00000529288 BABAM1Q9NWV8 329 aa17■□□□□ 0.31
CPSF1-204ENST00000529288 ADAMTS8Q9UP79 889 aa17■□□□□ 0.31
CPSF1-204ENST00000529288 LAMB4A4D0S4 1761 aa17■□□□□ 0.31
CPSF1-204ENST00000529288 IARSP41252 1262 aaKnown RBP16.99■□□□□ 0.31
CPSF1-204ENST00000529288 KRT24Q2M2I5 525 aa16.99■□□□□ 0.31
CPSF1-204ENST00000529288 IFFO2Q5TF58 517 aa16.99■□□□□ 0.31
CPSF1-204ENST00000529288 COPS6Q7L5N1 327 aa16.99■□□□□ 0.31
CPSF1-204ENST00000529288 XAGE3Q8WTP9 111 aa16.99■□□□□ 0.31
CPSF1-204ENST00000529288 ZNF428Q96B54 188 aa16.99■□□□□ 0.31
CPSF1-204ENST00000529288 UTP14AQ9BVJ6 771 aaKnown RBP16.99■□□□□ 0.31
CPSF1-204ENST00000529288 ZNF541Q9H0D2 1346 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 NTSR2O95665 410 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 POTEIP0CG38 1075 aa16.98■□□□□ 0.31
CPSF1-204ENST00000529288 POTEJP0CG39 1038 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms