RNA–Protein interactions for RNA: ENST00000528280.1

CHD7-208, Transcript of chromodomain helicase DNA binding protein 7, humanhuman

TSL 2

Gene CHD7, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD7-208ENST00000528280 TBC1D9BQ66K14 1250 aa12.57□□□□□ -0.4
CHD7-208ENST00000528280 BRCA1P38398 1863 aaKnown RBP12.57□□□□□ -0.4
CHD7-208ENST00000528280 ERVV-1B6SEH8 477 aa12.56□□□□□ -0.4
CHD7-208ENST00000528280 CALD1Q05682 793 aaKnown RBP12.56□□□□□ -0.4
CHD7-208ENST00000528280 TPTE2Q6XPS3 522 aa12.56□□□□□ -0.4
CHD7-208ENST00000528280 SBF1O95248 1867 aa12.56□□□□□ -0.4
CHD7-208ENST00000528280 ERBB4Q15303 1308 aa12.56□□□□□ -0.4
CHD7-208ENST00000528280 CARMIL3Q8ND23 1372 aa12.56□□□□□ -0.4
CHD7-208ENST00000528280 ARFGEF1Q9Y6D6 1849 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 TNRC6CQ9HCJ0 1690 aaKnown RBP12.55□□□□□ -0.4
CHD7-208ENST00000528280 PRAMEF22A3QJZ6 481 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 NBPF26B4DH59 902 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 ST5P78524 1137 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 NEUROD2Q15784 382 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 NBPF10Q6P3W6 841 aaKnown RBP12.55□□□□□ -0.4
CHD7-208ENST00000528280 C2CD5Q86YS7 1000 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 CCDC146Q8IYE0 955 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 NBPF15Q8N660 670 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 TTLL6Q8N841 843 aa12.55□□□□□ -0.4
CHD7-208ENST00000528280 THUMPD2Q9BTF0 503 aaKnown RBP12.55□□□□□ -0.4
CHD7-208ENST00000528280 CHL1O00533 1208 aa12.54□□□□□ -0.4
CHD7-208ENST00000528280 CHRNA5P30532 468 aa12.54□□□□□ -0.4
CHD7-208ENST00000528280 KIF6Q6ZMV9 814 aa12.54□□□□□ -0.4
CHD7-208ENST00000528280 CNBD1Q8NA66 436 aa12.54□□□□□ -0.4
CHD7-208ENST00000528280 CHMP4AQ9BY43 222 aa12.54□□□□□ -0.4
CHD7-208ENST00000528280 RRP7AQ9Y3A4 280 aaKnown RBP12.54□□□□□ -0.4
CHD7-208ENST00000528280 DLG5Q8TDM6 1919 aa12.54□□□□□ -0.4
CHD7-208ENST00000528280 ANP32CO43423 234 aa12.53□□□□□ -0.4
CHD7-208ENST00000528280 NBPF5PQ86XG9 351 aaPredicted RBP12.53□□□□□ -0.4
CHD7-208ENST00000528280 GTF2E1P29083 439 aaPredicted RBP12.52□□□□□ -0.41
CHD7-208ENST00000528280 PIP4K2AP48426 406 aaPredicted RBP12.52□□□□□ -0.41
CHD7-208ENST00000528280 PRR5LQ6MZQ0 368 aa12.52□□□□□ -0.41
CHD7-208ENST00000528280 CNKSR1Q969H4 720 aa12.52□□□□□ -0.41
CHD7-208ENST00000528280 NYXQ9GZU5 481 aa12.52□□□□□ -0.41
CHD7-208ENST00000528280 TRIM35Q9UPQ4 493 aa12.52□□□□□ -0.41
CHD7-208ENST00000528280 NIP7Q9Y221 180 aaKnown RBP eCLIP12.52□□□□□ -0.41
CHD7-208ENST00000528280 MYL6BP14649 208 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 STYK1Q6J9G0 422 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 NGEFQ8N5V2 710 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 SMC1BQ8NDV3 1235 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 ZNF622Q969S3 477 aaKnown RBP eCLIP12.51□□□□□ -0.41
CHD7-208ENST00000528280 CFAP44Q96MT7 982 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 RRAGCQ9HB90 399 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 LAS1LQ9Y4W2 734 aaKnown RBP12.51□□□□□ -0.41
CHD7-208ENST00000528280 MAP3K15Q6ZN16 1313 aa12.51□□□□□ -0.41
CHD7-208ENST00000528280 HOXB7P09629 217 aa12.5□□□□□ -0.41
CHD7-208ENST00000528280 EIF2S2P20042 333 aaKnown RBP12.5□□□□□ -0.41
CHD7-208ENST00000528280 SOGA3Q5TF21 947 aa12.5□□□□□ -0.41
CHD7-208ENST00000528280 MASTLQ96GX5 879 aa12.5□□□□□ -0.41
CHD7-208ENST00000528280 KDM2BQ8NHM5 1336 aa12.5□□□□□ -0.41
CHD7-208ENST00000528280 NRXN2Q9P2S2 1712 aa12.5□□□□□ -0.41
CHD7-208ENST00000528280 APAF1O14727 1248 aa12.49□□□□□ -0.41
CHD7-208ENST00000528280 GNAI1P63096 354 aa12.49□□□□□ -0.41
CHD7-208ENST00000528280 NCBP3Q53F19 620 aaKnown RBP12.49□□□□□ -0.41
CHD7-208ENST00000528280 C9orf131Q5VYM1 1079 aa12.49□□□□□ -0.41
CHD7-208ENST00000528280 AFDNP55196 1824 aaKnown RBP12.48□□□□□ -0.41
CHD7-208ENST00000528280 KDM3BQ7LBC6 1761 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 KLRG2A4D1S0 409 aaPredicted RBP12.48□□□□□ -0.41
CHD7-208ENST00000528280 SRGNP10124 158 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 NPR1P16066 1061 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 ALDH1B1P30837 517 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 HLFQ16534 295 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 PARP10Q53GL7 1025 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 HSP90AB3PQ58FF7 597 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 GIGYF2Q6Y7W6 1299 aaKnown RBP12.48□□□□□ -0.41
CHD7-208ENST00000528280 PPP1R42Q7Z4L9 355 aa12.48□□□□□ -0.41
CHD7-208ENST00000528280 DDX21Q9NR30 783 aaKnown RBP eCLIP12.48□□□□□ -0.41
CHD7-208ENST00000528280 ZC3H4Q9UPT8 1303 aaKnown RBP12.47□□□□□ -0.41
CHD7-208ENST00000528280 LMNB1P20700 586 aa12.47□□□□□ -0.41
CHD7-208ENST00000528280 TTLL7Q6ZT98 887 aa12.47□□□□□ -0.41
CHD7-208ENST00000528280 IFT57Q9NWB7 429 aa12.47□□□□□ -0.41
CHD7-208ENST00000528280 CCDC88AQ3V6T2 1871 aa12.46□□□□□ -0.41
CHD7-208ENST00000528280 SCN7AQ01118 1682 aa12.46□□□□□ -0.41
CHD7-208ENST00000528280 PDIA6Q15084 440 aa12.46□□□□□ -0.41
CHD7-208ENST00000528280 RNF181Q9P0P0 153 aa12.46□□□□□ -0.41
CHD7-208ENST00000528280 DBF4Q9UBU7 674 aaPredicted RBP12.46□□□□□ -0.41
CHD7-208ENST00000528280 ZNF853P0CG23 659 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 CCDC27Q2M243 656 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 GRIPAP1Q4V328 841 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 HDGFL1Q5TGJ6 251 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 COPS6Q7L5N1 327 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 ZNF34Q8IZ26 560 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 CCDC24Q8N4L8 307 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 ZBTB3Q9H5J0 574 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 MRS2Q9HD23 443 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 PRDM10Q9NQV6 1147 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 HYPKQ9NX55 129 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 LAMB4A4D0S4 1761 aa12.45□□□□□ -0.42
CHD7-208ENST00000528280 RNF123Q5XPI4 1314 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 FAM177BA6PVY3 158 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 C21orf2O43822 256 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 FAM161AQ3B820 660 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 DUSP27Q5VZP5 1158 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 DPY19L2Q6NUT2 758 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 MBIPQ9NS73 344 aa12.44□□□□□ -0.42
CHD7-208ENST00000528280 IBTKQ9P2D0 1353 aaPredicted RBP12.43□□□□□ -0.42
CHD7-208ENST00000528280 BCORQ6W2J9 1755 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 AIMP1Q12904 312 aaKnown RBP12.43□□□□□ -0.42
CHD7-208ENST00000528280 TCIRG1Q13488 830 aa12.43□□□□□ -0.42
CHD7-208ENST00000528280 SLC10A5Q5PT55 438 aa12.43□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms