RNA–Protein interactions for RNA: ENST00000524556.1

CSTF3-204, Transcript of cleavage stimulation factor subunit 3, humanhuman

TSL 3

Gene CSTF3, Length 558 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSTF3-204ENST00000524556 ST5P78524 1137 aa19.82■□□□□ 0.76
CSTF3-204ENST00000524556 SOGA3Q5TF21 947 aa19.82■□□□□ 0.76
CSTF3-204ENST00000524556 PRPF40BQ6NWY9 871 aaKnown RBP19.82■□□□□ 0.76
CSTF3-204ENST00000524556 MASTLQ96GX5 879 aa19.82■□□□□ 0.76
CSTF3-204ENST00000524556 CREBZFQ9NS37 354 aa19.82■□□□□ 0.76
CSTF3-204ENST00000524556 BCORQ6W2J9 1755 aa19.82■□□□□ 0.76
CSTF3-204ENST00000524556 CEMIPQ8WUJ3 1361 aa19.81■□□□□ 0.76
CSTF3-204ENST00000524556 KCNQ3O43525 872 aa19.8■□□□□ 0.76
CSTF3-204ENST00000524556 POTEIP0CG38 1075 aa19.8■□□□□ 0.76
CSTF3-204ENST00000524556 POTEJP0CG39 1038 aa19.8■□□□□ 0.76
CSTF3-204ENST00000524556 DZIP3Q86Y13 1208 aaKnown RBP19.8■□□□□ 0.76
CSTF3-204ENST00000524556 BTBD11A6QL63 1104 aa19.79■□□□□ 0.76
CSTF3-204ENST00000524556 MKRN1Q9UHC7 482 aaKnown RBP19.79■□□□□ 0.76
CSTF3-204ENST00000524556 SCN4AP35499 1836 aa19.79■□□□□ 0.76
CSTF3-204ENST00000524556 CCER1Q8TC90 406 aaPredicted RBP19.78■□□□□ 0.76
CSTF3-204ENST00000524556 C7orf43Q8WVR3 580 aa19.78■□□□□ 0.76
CSTF3-204ENST00000524556 USP16Q9Y5T5 823 aa19.78■□□□□ 0.76
CSTF3-204ENST00000524556 NPC1L1Q9UHC9 1359 aa19.78■□□□□ 0.76
CSTF3-204ENST00000524556 CLEC4GQ6UXB4 293 aa19.77■□□□□ 0.76
CSTF3-204ENST00000524556 PHACTR3Q96KR7 559 aa19.77■□□□□ 0.76
CSTF3-204ENST00000524556 IQCA1LA6NCM1 817 aa19.76■□□□□ 0.75
CSTF3-204ENST00000524556 LDHDQ86WU2 507 aa19.76■□□□□ 0.75
CSTF3-204ENST00000524556 NBPF5PQ86XG9 351 aaPredicted RBP19.76■□□□□ 0.75
CSTF3-204ENST00000524556 L3MBTL3Q96JM7 780 aaPredicted RBP19.76■□□□□ 0.75
CSTF3-204ENST00000524556 PIP4K2AP48426 406 aaPredicted RBP19.75■□□□□ 0.75
CSTF3-204ENST00000524556 CNGB1Q14028 1251 aaPredicted RBP19.75■□□□□ 0.75
CSTF3-204ENST00000524556 CCDC93Q567U6 631 aa19.75■□□□□ 0.75
CSTF3-204ENST00000524556 TAF1DQ9H5J8 278 aaPredicted RBP19.75■□□□□ 0.75
CSTF3-204ENST00000524556 PASKQ96RG2 1323 aa19.75■□□□□ 0.75
CSTF3-204ENST00000524556 CNTNAP1P78357 1384 aa19.74■□□□□ 0.75
CSTF3-204ENST00000524556 PRAMEF22A3QJZ6 481 aa19.74■□□□□ 0.75
CSTF3-204ENST00000524556 KLRG2A4D1S0 409 aaPredicted RBP19.74■□□□□ 0.75
CSTF3-204ENST00000524556 NPR1P16066 1061 aa19.74■□□□□ 0.75
CSTF3-204ENST00000524556 PRKAR2BP31323 418 aa19.74■□□□□ 0.75
CSTF3-204ENST00000524556 ZNF652Q9Y2D9 606 aa19.74■□□□□ 0.75
CSTF3-204ENST00000524556 SNRPA1P09661 255 aaKnown RBP19.73■□□□□ 0.75
CSTF3-204ENST00000524556 RSPH6AQ9H0K4 717 aa19.73■□□□□ 0.75
CSTF3-204ENST00000524556 FKBP4Q02790 459 aaKnown RBP eCLIP19.72■□□□□ 0.75
CSTF3-204ENST00000524556 TPTE2Q6XPS3 522 aa19.72■□□□□ 0.75
CSTF3-204ENST00000524556 FOXN1O15353 648 aa19.71■□□□□ 0.75
CSTF3-204ENST00000524556 ITGBL1O95965 494 aaPredicted RBP19.71■□□□□ 0.75
CSTF3-204ENST00000524556 ZNF277Q9NRM2 450 aaPredicted RBP19.71■□□□□ 0.75
CSTF3-204ENST00000524556 TMEM88BA6NKF7 163 aa19.7■□□□□ 0.74
CSTF3-204ENST00000524556 RGL2O15211 777 aa19.7■□□□□ 0.74
CSTF3-204ENST00000524556 RTKN2Q8IZC4 609 aa19.7■□□□□ 0.74
CSTF3-204ENST00000524556 NIP7Q9Y221 180 aaKnown RBP eCLIP19.7■□□□□ 0.74
CSTF3-204ENST00000524556 ZNF541Q9H0D2 1346 aa19.7■□□□□ 0.74
CSTF3-204ENST00000524556 NBPF26B4DH59 902 aa19.69■□□□□ 0.74
CSTF3-204ENST00000524556 VEGFBP49765 207 aa19.69■□□□□ 0.74
CSTF3-204ENST00000524556 EAPPQ56P03 285 aaPredicted RBP19.69■□□□□ 0.74
CSTF3-204ENST00000524556 NBPF10Q6P3W6 841 aaKnown RBP19.69■□□□□ 0.74
CSTF3-204ENST00000524556 OLFM4Q6UX06 510 aa19.69■□□□□ 0.74
CSTF3-204ENST00000524556 NBPF15Q8N660 670 aa19.69■□□□□ 0.74
CSTF3-204ENST00000524556 RTF1Q92541 710 aaKnown RBP19.69■□□□□ 0.74
CSTF3-204ENST00000524556 CFAP53Q96M91 514 aa19.69■□□□□ 0.74
CSTF3-204ENST00000524556 HACL1Q9UJ83 578 aa19.69■□□□□ 0.74
CSTF3-204ENST00000524556 MCM10Q7L590 875 aa19.68■□□□□ 0.74
CSTF3-204ENST00000524556 PRDM10Q9NQV6 1147 aa19.68■□□□□ 0.74
CSTF3-204ENST00000524556 ADAMTSL1Q8N6G6 1762 aa19.67■□□□□ 0.74
CSTF3-204ENST00000524556 ALDH1B1P30837 517 aa19.67■□□□□ 0.74
CSTF3-204ENST00000524556 EPHX2P34913 555 aa19.67■□□□□ 0.74
CSTF3-204ENST00000524556 CLEC11AQ9Y240 323 aa19.67■□□□□ 0.74
CSTF3-204ENST00000524556 NUDCQ9Y266 331 aa19.67■□□□□ 0.74
CSTF3-204ENST00000524556 FAM177BA6PVY3 158 aa19.66■□□□□ 0.74
CSTF3-204ENST00000524556 FZD9O00144 591 aa19.66■□□□□ 0.74
CSTF3-204ENST00000524556 CTCFP49711 727 aaPredicted RBP19.66■□□□□ 0.74
CSTF3-204ENST00000524556 SYNE4Q8N205 404 aa19.66■□□□□ 0.74
CSTF3-204ENST00000524556 AIDAQ96BJ3 306 aa19.66■□□□□ 0.74
CSTF3-204ENST00000524556 IARSP41252 1262 aaKnown RBP19.65■□□□□ 0.74
CSTF3-204ENST00000524556 HLFQ16534 295 aa19.65■□□□□ 0.74
CSTF3-204ENST00000524556 PNMA8AQ86V59 439 aaPredicted RBP19.65■□□□□ 0.74
CSTF3-204ENST00000524556 HTATSF1O43719 755 aaKnown RBP19.64■□□□□ 0.73
CSTF3-204ENST00000524556 U2AF1L5P0DN76 240 aaPredicted RBP19.64■□□□□ 0.73
CSTF3-204ENST00000524556 U2AF1Q01081 240 aaKnown RBP eCLIP19.64■□□□□ 0.738e-37■■■■□ 22.1
CSTF3-204ENST00000524556 DCTN1Q14203 1278 aa19.64■□□□□ 0.73
CSTF3-204ENST00000524556 WBP1LQ9NX94 342 aa19.64■□□□□ 0.73
CSTF3-204ENST00000524556 RNF123Q5XPI4 1314 aa19.63■□□□□ 0.73
CSTF3-204ENST00000524556 GTF2E1P29083 439 aaPredicted RBP19.63■□□□□ 0.73
CSTF3-204ENST00000524556 CNTROBQ8N137 903 aa19.63■□□□□ 0.73
CSTF3-204ENST00000524556 GPC2Q8N158 579 aa19.63■□□□□ 0.73
CSTF3-204ENST00000524556 NUP98P52948 1817 aa19.62■□□□□ 0.73
CSTF3-204ENST00000524556 TAF7Q15545 349 aaPredicted RBP19.62■□□□□ 0.73
CSTF3-204ENST00000524556 MAP1SQ66K74 1059 aaPredicted RBP19.62■□□□□ 0.73
CSTF3-204ENST00000524556 PSMD1Q99460 953 aa19.62■□□□□ 0.73
CSTF3-204ENST00000524556 SNED1Q8TER0 1413 aa19.61■□□□□ 0.73
CSTF3-204ENST00000524556 RASSF10A6NK89 507 aa19.61■□□□□ 0.73
CSTF3-204ENST00000524556 DEFB115Q30KQ5 88 aa19.61■□□□□ 0.73
CSTF3-204ENST00000524556 CRY2Q49AN0 593 aa19.61■□□□□ 0.73
CSTF3-204ENST00000524556 LAMB4A4D0S4 1761 aa19.61■□□□□ 0.73
CSTF3-204ENST00000524556 JDP2Q8WYK2 163 aa19.6■□□□□ 0.73
CSTF3-204ENST00000524556 NYXQ9GZU5 481 aa19.6■□□□□ 0.73
CSTF3-204ENST00000524556 MIS18AQ9NYP9 233 aa19.6■□□□□ 0.73
CSTF3-204ENST00000524556 ERVV-1B6SEH8 477 aa19.59■□□□□ 0.73
CSTF3-204ENST00000524556 PPP2R1AP30153 589 aa19.59■□□□□ 0.73
CSTF3-204ENST00000524556 LBX1P52954 281 aa19.59■□□□□ 0.73
CSTF3-204ENST00000524556 CC2D2BQ6DHV5 1058 aa19.59■□□□□ 0.73
CSTF3-204ENST00000524556 ABCC12Q96J65 1359 aa19.58■□□□□ 0.73
CSTF3-204ENST00000524556 EIF6P56537 245 aaKnown RBP19.58■□□□□ 0.72
CSTF3-204ENST00000524556 NUTM1Q86Y26 1132 aa19.58■□□□□ 0.72
CSTF3-204ENST00000524556 WDR33Q9C0J8 1336 aaKnown RBP19.57■□□□□ 0.72
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms