RNA–Protein interactions for RNA: ENST00000523488.5

CSMD1-213, Transcript of CUB and Sushi multiple domains 1, humanhuman

TSL 1 (best)

Gene CSMD1, Length 3,714 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD1-213ENST00000523488 STAG3Q9UJ98 1225 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 SBNO1A3KN83 1393 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 SPEF2Q9C093 1822 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 IQCB1Q15051 598 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 POLKQ9UBT6 870 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 TECPR2O15040 1411 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 TM6SF1Q9BZW5 370 aa9.97□□□□□ -0.81
CSMD1-213ENST00000523488 ST3GAL1Q11201 340 aa9.96□□□□□ -0.81
CSMD1-213ENST00000523488 NOL8Q76FK4 1167 aaKnown RBP9.96□□□□□ -0.81
CSMD1-213ENST00000523488 REXO1L1PQ8IX06 675 aa9.96□□□□□ -0.81
CSMD1-213ENST00000523488 SMARCA5O60264 1052 aaPredicted RBP9.96□□□□□ -0.81
CSMD1-213ENST00000523488 HCLS1P14317 486 aaPredicted RBP9.96□□□□□ -0.81
CSMD1-213ENST00000523488 CFAP70Q5T0N1 1121 aa9.96□□□□□ -0.81
CSMD1-213ENST00000523488 SIRT1Q96EB6 747 aa9.96□□□□□ -0.81
CSMD1-213ENST00000523488 BPIFA3Q9BQP9 254 aa9.96□□□□□ -0.81
CSMD1-213ENST00000523488 F13A1P00488 732 aa9.96□□□□□ -0.82
CSMD1-213ENST00000523488 APPP05067 770 aa9.96□□□□□ -0.82
CSMD1-213ENST00000523488 HNRNPH2P55795 449 aaKnown RBP9.96□□□□□ -0.82
CSMD1-213ENST00000523488 UTP14AQ9BVJ6 771 aaKnown RBP9.96□□□□□ -0.82
CSMD1-213ENST00000523488 PSDA5PKW4 1024 aaPredicted RBP9.95□□□□□ -0.82
CSMD1-213ENST00000523488 U2AF1L5P0DN76 240 aaPredicted RBP9.95□□□□□ -0.82
CSMD1-213ENST00000523488 U2AF1Q01081 240 aaKnown RBP eCLIP9.95□□□□□ -0.82
CSMD1-213ENST00000523488 NFE2L2Q16236 605 aa9.95□□□□□ -0.82
CSMD1-213ENST00000523488 PHLPP2Q6ZVD8 1323 aa9.95□□□□□ -0.82
CSMD1-213ENST00000523488 C16orf45Q96MC5 204 aaPredicted RBP9.95□□□□□ -0.82
CSMD1-213ENST00000523488 ATXN2Q99700 1313 aaKnown RBP9.95□□□□□ -0.82
CSMD1-213ENST00000523488 TMX1Q9H3N1 280 aa9.95□□□□□ -0.82
CSMD1-213ENST00000523488 EDC4Q6P2E9 1401 aaKnown RBP9.95□□□□□ -0.82
CSMD1-213ENST00000523488 PRAM1Q96QH2 718 aa9.95□□□□□ -0.82
CSMD1-213ENST00000523488 GDPD2Q9HCC8 539 aa9.95□□□□□ -0.82
CSMD1-213ENST00000523488 AGLP35573 1532 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 AXDND1Q5T1B0 1012 aaPredicted RBP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 LRRC8AQ8IWT6 810 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 TXLNBQ8N3L3 684 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 NEDD4P46934 1319 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 MAP2K7O14733 419 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 TNNT1P13805 278 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 GUCY2CP25092 1073 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 CHMLP26374 656 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 PDE1AP54750 535 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 SAFB2Q14151 953 aaKnown RBP eCLIP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 DHX8Q14562 1220 aaKnown RBP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 BMS1Q14692 1282 aaKnown RBP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 MTMR6Q9Y217 621 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 MLECQ14165 292 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 TPD52L1Q16890 204 aaPredicted RBP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 NUTM2DQ5VT03 806 aaPredicted RBP9.94□□□□□ -0.82
CSMD1-213ENST00000523488 GGT6Q6P531 493 aa9.94□□□□□ -0.82
CSMD1-213ENST00000523488 ANKARQ7Z5J8 1434 aa9.93□□□□□ -0.82
CSMD1-213ENST00000523488 PNMA6AP0CW24 399 aaPredicted RBP9.93□□□□□ -0.82
CSMD1-213ENST00000523488 IMPACTQ9P2X3 320 aa9.93□□□□□ -0.82
CSMD1-213ENST00000523488 PALD1Q9ULE6 856 aa9.93□□□□□ -0.82
CSMD1-213ENST00000523488 DHX16O60231 1041 aaKnown RBP9.93□□□□□ -0.82
CSMD1-213ENST00000523488 NEK4P51957 841 aa9.93□□□□□ -0.82
CSMD1-213ENST00000523488 HTATSF1O43719 755 aaKnown RBP9.93□□□□□ -0.82
CSMD1-213ENST00000523488 TEX35Q5T0J7 233 aa9.93□□□□□ -0.82
CSMD1-213ENST00000523488 HNRNPLLQ8WVV9 542 aaKnown RBP9.93□□□□□ -0.82
CSMD1-213ENST00000523488 ZBTB9Q96C00 473 aa9.93□□□□□ -0.82
CSMD1-213ENST00000523488 CACTINQ8WUQ7 758 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 SECISBP2LQ93073 1101 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 EXOC4Q96A65 974 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 NOL10Q9BSC4 688 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 CLSTN2Q9H4D0 955 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 C1orf115Q9H7X2 142 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 A1CFQ9NQ94 594 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 POGZQ7Z3K3 1410 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 MAP3K5Q99683 1374 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 BCL9LQ86UU0 1499 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 EVC2Q86UK5 1308 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 NCAPD2Q15021 1401 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 NPHP1O15259 732 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 USP5P45974 858 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 GNAI1P63096 354 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 CCAR2Q8N163 923 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 FBXO18Q8NFZ0 1043 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 MYO5AQ9Y4I1 1855 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 OVOS2A0A0G2JMS6 1433 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 OVOS2A0A0J9YW53 1432 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 KDM6AO15550 1401 aaPredicted RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 OVOS2Q6IE36 1432 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 RSRC2Q7L4I2 434 aaKnown RBP9.92□□□□□ -0.82
CSMD1-213ENST00000523488 SRLQ86TD4 932 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 CEP120Q8N960 986 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 SLC12A5Q9H2X9 1139 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 SLIT1O75093 1534 aa9.92□□□□□ -0.82
CSMD1-213ENST00000523488 FYB1O15117 783 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 PTGS1P23219 599 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 IL13P35225 146 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 CCDC144BQ3MJ40 725 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 CCDC144CPQ8IYA2 1237 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 NCAPGQ9BPX3 1015 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 LSG1Q9H089 658 aaKnown RBP9.91□□□□□ -0.82
CSMD1-213ENST00000523488 CEP135Q66GS9 1140 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 GOLGA5Q8TBA6 731 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 RTF1Q92541 710 aaKnown RBP9.91□□□□□ -0.82
CSMD1-213ENST00000523488 TACO1Q9BSH4 297 aaKnown RBP9.91□□□□□ -0.82
CSMD1-213ENST00000523488 TTC41PQ6P2S7 1318 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 TMEM94Q12767 1356 aa9.91□□□□□ -0.82
CSMD1-213ENST00000523488 APBB1O00213 710 aa9.91□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 88.2 ms