RNA–Protein interactions for RNA: ENST00000523427.1

PVT1-219, Transcript of Pvt1 oncogene, humanhuman

TSL 3 BASIC

Gene PVT1, Length 938 nt, Biotype lincRNA, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PVT1-219ENST00000523427 RSPH6AQ9H0K4 717 aa34.72■■■■□ 3.15
PVT1-219ENST00000523427 CEMIPQ8WUJ3 1361 aa34.72■■■■□ 3.15
PVT1-219ENST00000523427 DDNO94850 711 aaPredicted RBP34.71■■■■□ 3.15
PVT1-219ENST00000523427 SRGNP10124 158 aa34.71■■■■□ 3.15
PVT1-219ENST00000523427 STYK1Q6J9G0 422 aa34.71■■■■□ 3.15
PVT1-219ENST00000523427 SIPA1L3O60292 1781 aaPredicted RBP34.71■■■■□ 3.15
PVT1-219ENST00000523427 HSPA1AP0DMV8 641 aaKnown RBP34.7■■■■□ 3.15
PVT1-219ENST00000523427 HSPA1BP0DMV9 641 aaKnown RBP34.7■■■■□ 3.15
PVT1-219ENST00000523427 MCM10Q7L590 875 aa34.7■■■■□ 3.15
PVT1-219ENST00000523427 NBPF5PQ86XG9 351 aaPredicted RBP34.7■■■■□ 3.15
PVT1-219ENST00000523427 MASTLQ96GX5 879 aa34.7■■■■□ 3.15
PVT1-219ENST00000523427 PCNTO95613 3336 aa34.68■■■■□ 3.14
PVT1-219ENST00000523427 U2AF1L5P0DN76 240 aaPredicted RBP34.68■■■■□ 3.14
PVT1-219ENST00000523427 U2AF1Q01081 240 aaKnown RBP eCLIP34.68■■■■□ 3.14
PVT1-219ENST00000523427 RTF1Q92541 710 aaKnown RBP34.68■■■■□ 3.14
PVT1-219ENST00000523427 FAM177BA6PVY3 158 aa34.67■■■■□ 3.14
PVT1-219ENST00000523427 NUDCQ9Y266 331 aa34.67■■■■□ 3.14
PVT1-219ENST00000523427 SLX4Q8IY92 1834 aa34.67■■■■□ 3.14
PVT1-219ENST00000523427 LTBP3Q9NS15 1303 aa34.66■■■■□ 3.14
PVT1-219ENST00000523427 POTEIP0CG38 1075 aa34.66■■■■□ 3.14
PVT1-219ENST00000523427 POTEJP0CG39 1038 aa34.66■■■■□ 3.14
PVT1-219ENST00000523427 DCTN1Q14203 1278 aa34.66■■■■□ 3.14
PVT1-219ENST00000523427 FER1L6Q2WGJ9 1857 aa34.66■■■■□ 3.14
PVT1-219ENST00000523427 SNRPA1P09661 255 aaKnown RBP34.65■■■■□ 3.14
PVT1-219ENST00000523427 CHADLQ6NUI6 762 aa34.65■■■■□ 3.14
PVT1-219ENST00000523427 SOGA3Q5TF21 947 aa34.64■■■■□ 3.14
PVT1-219ENST00000523427 CACNA1SQ13698 1873 aa34.64■■■■□ 3.14
PVT1-219ENST00000523427 ZNF652Q9Y2D9 606 aa34.63■■■■□ 3.13
PVT1-219ENST00000523427 MKRN1Q9UHC7 482 aaKnown RBP34.62■■■■□ 3.13
PVT1-219ENST00000523427 NIP7Q9Y221 180 aaKnown RBP eCLIP34.61■■■■□ 3.13
PVT1-219ENST00000523427 DICER1Q9UPY3 1922 aaKnown RBP34.61■■■■□ 3.13
PVT1-219ENST00000523427 CLEC4GQ6UXB4 293 aa34.6■■■■□ 3.13
PVT1-219ENST00000523427 CCDC93Q567U6 631 aa34.59■■■■□ 3.13
PVT1-219ENST00000523427 NBPF26B4DH59 902 aa34.58■■■■□ 3.13
PVT1-219ENST00000523427 NPR1P16066 1061 aa34.58■■■■□ 3.13
PVT1-219ENST00000523427 NBPF10Q6P3W6 841 aaKnown RBP34.58■■■■□ 3.13
PVT1-219ENST00000523427 OLFM4Q6UX06 510 aa34.58■■■■□ 3.13
PVT1-219ENST00000523427 NBPF15Q8N660 670 aa34.58■■■■□ 3.13
PVT1-219ENST00000523427 BCORQ6W2J9 1755 aa34.57■■■■□ 3.12
PVT1-219ENST00000523427 TPTE2Q6XPS3 522 aa34.57■■■■□ 3.12
PVT1-219ENST00000523427 MIS18AQ9NYP9 233 aa34.57■■■■□ 3.12
PVT1-219ENST00000523427 PPP2R1AP30153 589 aa34.56■■■■□ 3.12
PVT1-219ENST00000523427 C7orf43Q8WVR3 580 aa34.56■■■■□ 3.12
PVT1-219ENST00000523427 ZNF277Q9NRM2 450 aaPredicted RBP34.56■■■■□ 3.12
PVT1-219ENST00000523427 NGEFQ8N5V2 710 aa34.55■■■■□ 3.12
PVT1-219ENST00000523427 CREBZFQ9NS37 354 aa34.55■■■■□ 3.12
PVT1-219ENST00000523427 IQCA1LA6NCM1 817 aa34.54■■■■□ 3.12
PVT1-219ENST00000523427 GTF2E1P29083 439 aaPredicted RBP34.54■■■■□ 3.12
PVT1-219ENST00000523427 HLFQ16534 295 aa34.53■■■■□ 3.12
PVT1-219ENST00000523427 EAPPQ56P03 285 aaPredicted RBP34.53■■■■□ 3.12
PVT1-219ENST00000523427 FKBP4Q02790 459 aaKnown RBP eCLIP34.52■■■■□ 3.12
PVT1-219ENST00000523427 TAF1DQ9H5J8 278 aaPredicted RBP34.52■■■■□ 3.12
PVT1-219ENST00000523427 TAF7Q15545 349 aaPredicted RBP34.5■■■■□ 3.11
PVT1-219ENST00000523427 CLEC11AQ9Y240 323 aa34.5■■■■□ 3.11
PVT1-219ENST00000523427 ZNF541Q9H0D2 1346 aa34.5■■■■□ 3.11
PVT1-219ENST00000523427 LDHDQ86WU2 507 aa34.49■■■■□ 3.11
PVT1-219ENST00000523427 KLRG2A4D1S0 409 aaPredicted RBP34.47■■■■□ 3.11
PVT1-219ENST00000523427 L3MBTL3Q96JM7 780 aaPredicted RBP34.47■■■■□ 3.11
PVT1-219ENST00000523427 ARFGEF2Q9Y6D5 1785 aa34.46■■■■□ 3.11
PVT1-219ENST00000523427 RTKN2Q8IZC4 609 aa34.46■■■■□ 3.11
PVT1-219ENST00000523427 HTATSF1O43719 755 aaKnown RBP34.45■■■■□ 3.11
PVT1-219ENST00000523427 SYNE4Q8N205 404 aa34.45■■■■□ 3.11
PVT1-219ENST00000523427 ALDH1B1P30837 517 aa34.44■■■■□ 3.1
PVT1-219ENST00000523427 NUTM1Q86Y26 1132 aa34.44■■■■□ 3.1
PVT1-219ENST00000523427 HACL1Q9UJ83 578 aa34.44■■■■□ 3.1
PVT1-219ENST00000523427 RRP7AQ9Y3A4 280 aaKnown RBP34.43■■■■□ 3.1
PVT1-219ENST00000523427 PASKQ96RG2 1323 aa34.42■■■■□ 3.1
PVT1-219ENST00000523427 IARSP41252 1262 aaKnown RBP34.42■■■■□ 3.1
PVT1-219ENST00000523427 RNF123Q5XPI4 1314 aa34.41■■■■□ 3.1
PVT1-219ENST00000523427 NEFMP07197 916 aa34.41■■■■□ 3.1
PVT1-219ENST00000523427 EPHX2P34913 555 aa34.41■■■■□ 3.1
PVT1-219ENST00000523427 CNTNAP1P78357 1384 aa34.4■■■■□ 3.1
PVT1-219ENST00000523427 RGL2O15211 777 aa34.39■■■■□ 3.1
PVT1-219ENST00000523427 GPTP24298 496 aa34.39■■■■□ 3.1
PVT1-219ENST00000523427 TMEM88BA6NKF7 163 aa34.38■■■■□ 3.09
PVT1-219ENST00000523427 FOXN1O15353 648 aa34.38■■■■□ 3.09
PVT1-219ENST00000523427 ITGBL1O95965 494 aaPredicted RBP34.38■■■■□ 3.09
PVT1-219ENST00000523427 MYL6BP14649 208 aa34.38■■■■□ 3.09
PVT1-219ENST00000523427 ABCC12Q96J65 1359 aa34.37■■■■□ 3.09
PVT1-219ENST00000523427 SCN4AP35499 1836 aa34.37■■■■□ 3.09
PVT1-219ENST00000523427 MAP1SQ66K74 1059 aaPredicted RBP34.37■■■■□ 3.09
PVT1-219ENST00000523427 TTLL7Q6ZT98 887 aa34.37■■■■□ 3.09
PVT1-219ENST00000523427 THUMPD2Q9BTF0 503 aaKnown RBP34.37■■■■□ 3.09
PVT1-219ENST00000523427 NYXQ9GZU5 481 aa34.37■■■■□ 3.09
PVT1-219ENST00000523427 TCERG1O14776 1098 aaKnown RBP34.36■■■■□ 3.09
PVT1-219ENST00000523427 VEGFBP49765 207 aa34.36■■■■□ 3.09
PVT1-219ENST00000523427 KIF6Q6ZMV9 814 aa34.36■■■■□ 3.09
PVT1-219ENST00000523427 JDP2Q8WYK2 163 aa34.36■■■■□ 3.09
PVT1-219ENST00000523427 ZBTB3Q9H5J0 574 aa34.36■■■■□ 3.09
PVT1-219ENST00000523427 GJA3Q9Y6H8 435 aa34.36■■■■□ 3.09
PVT1-219ENST00000523427 FZD9O00144 591 aa34.35■■■■□ 3.09
PVT1-219ENST00000523427 RPGRQ92834 1020 aaKnown RBP34.35■■■■□ 3.09
PVT1-219ENST00000523427 PNISRQ8TF01 805 aaKnown RBP34.34■■■■□ 3.09
PVT1-219ENST00000523427 MAP3K15Q6ZN16 1313 aa34.33■■■■□ 3.09
PVT1-219ENST00000523427 CNTROBQ8N137 903 aa34.33■■■■□ 3.09
PVT1-219ENST00000523427 AIDAQ96BJ3 306 aa34.33■■■■□ 3.09
PVT1-219ENST00000523427 ERVV-1B6SEH8 477 aa34.32■■■■□ 3.08
PVT1-219ENST00000523427 PNMA8AQ86V59 439 aaPredicted RBP34.32■■■■□ 3.08
PVT1-219ENST00000523427 EIF4A1P60842 406 aaKnown RBP34.31■■■■□ 3.08
PVT1-219ENST00000523427 CRY2Q49AN0 593 aa34.31■■■■□ 3.08
Retrieved 100 of 20,778 RNA–protein pairs in 45.6 ms