RNA–Protein interactions for RNA: ENST00000522515.5

LSM1-204, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 3

Gene LSM1, Length 1,568 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-204ENST00000522515 ZBTB3Q9H5J0 574 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 TNNQ9UQP3 1299 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 PNPLA7Q6ZV29 1317 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 ADCY9O60503 1353 aa20.73■□□□□ 0.91
LSM1-204ENST00000522515 F6X3S4 739 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 IPO8O15397 1037 aaKnown RBP20.72■□□□□ 0.91
LSM1-204ENST00000522515 RFC4P35249 363 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 ZKSCAN2Q63HK3 967 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 KSR2Q6VAB6 950 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 ATF7IPQ6VMQ6 1270 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 PLBD2Q8NHP8 589 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 MAP3K15Q6ZN16 1313 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 CAMTA2O94983 1202 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 TRIM27P14373 513 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 RIC3Q7Z5B4 369 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 COL23A1Q86Y22 540 aaPredicted RBP20.72■□□□□ 0.91
LSM1-204ENST00000522515 SRP68Q9UHB9 627 aaKnown RBP20.72■□□□□ 0.91
LSM1-204ENST00000522515 NARFQ9UHQ1 456 aa20.72■□□□□ 0.91
LSM1-204ENST00000522515 RRP1P56182 461 aaKnown RBP20.71■□□□□ 0.91
LSM1-204ENST00000522515 FLAD1Q8NFF5 587 aa20.71■□□□□ 0.91
LSM1-204ENST00000522515 MAP3K2Q9Y2U5 619 aa20.71■□□□□ 0.91
LSM1-204ENST00000522515 QSER1Q2KHR3 1735 aa20.7■□□□□ 0.9
LSM1-204ENST00000522515 ARFGEF2Q9Y6D5 1785 aa20.7■□□□□ 0.9
LSM1-204ENST00000522515 HLFQ16534 295 aa20.7■□□□□ 0.9
LSM1-204ENST00000522515 GOLGA6L2Q8N9W4 650 aaPredicted RBP20.7■□□□□ 0.9
LSM1-204ENST00000522515 API5Q9BZZ5 524 aaKnown RBP20.7■□□□□ 0.9
LSM1-204ENST00000522515 RNF123Q5XPI4 1314 aa20.7■□□□□ 0.9
LSM1-204ENST00000522515 USP42Q9H9J4 1324 aaKnown RBP20.7■□□□□ 0.9
LSM1-204ENST00000522515 BCORQ6W2J9 1755 aa20.7■□□□□ 0.9
LSM1-204ENST00000522515 ERVV-1B6SEH8 477 aa20.69■□□□□ 0.9
LSM1-204ENST00000522515 ZPR1O75312 459 aa20.69■□□□□ 0.9
LSM1-204ENST00000522515 USPL1Q5W0Q7 1092 aa20.69■□□□□ 0.9
LSM1-204ENST00000522515 DNAAF4Q8WXU2 420 aa20.69■□□□□ 0.9
LSM1-204ENST00000522515 CLUAP1Q96AJ1 413 aa20.69■□□□□ 0.9
LSM1-204ENST00000522515 SCN7AQ01118 1682 aa20.69■□□□□ 0.9
LSM1-204ENST00000522515 BCL2L12Q9HB09 334 aa20.68■□□□□ 0.9
LSM1-204ENST00000522515 SOCS7O14512 581 aa20.68■□□□□ 0.9
LSM1-204ENST00000522515 MSH5O43196 834 aa20.68■□□□□ 0.9
LSM1-204ENST00000522515 GIGYF2Q6Y7W6 1299 aaKnown RBP20.68■□□□□ 0.9
LSM1-204ENST00000522515 SLC4A10Q6U841 1118 aa20.67■□□□□ 0.9
LSM1-204ENST00000522515 METTL22Q9BUU2 404 aaPredicted RBP20.67■□□□□ 0.9
LSM1-204ENST00000522515 PDGFDQ9GZP0 370 aaPredicted RBP20.67■□□□□ 0.9
LSM1-204ENST00000522515 NUP98P52948 1817 aa20.67■□□□□ 0.9
LSM1-204ENST00000522515 RLBP1P12271 317 aa20.66■□□□□ 0.9
LSM1-204ENST00000522515 R3HDM1Q15032 1099 aaKnown RBP20.66■□□□□ 0.9
LSM1-204ENST00000522515 C20orf194Q5TEA3 1177 aa20.66■□□□□ 0.9
LSM1-204ENST00000522515 ABCC4O15439 1325 aa20.66■□□□□ 0.9
LSM1-204ENST00000522515 GYS1P13807 737 aa20.65■□□□□ 0.9
LSM1-204ENST00000522515 DZIP1LQ8IYY4 767 aaKnown RBP20.65■□□□□ 0.9
LSM1-204ENST00000522515 PANK1Q8TE04 598 aa20.65■□□□□ 0.9
LSM1-204ENST00000522515 MYD88Q99836 296 aa20.65■□□□□ 0.9
LSM1-204ENST00000522515 TCIRG1Q13488 830 aa20.64■□□□□ 0.9
LSM1-204ENST00000522515 CLEC4GQ6UXB4 293 aa20.64■□□□□ 0.9
LSM1-204ENST00000522515 FTSJ3Q8IY81 847 aaKnown RBP20.64■□□□□ 0.9
LSM1-204ENST00000522515 ZNF652Q9Y2D9 606 aa20.64■□□□□ 0.9
LSM1-204ENST00000522515 ATP5J2-PTCD1G3V325 749 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 RGL2O15211 777 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 FKBP8Q14318 412 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 BEND3Q5T5X7 828 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 PXDNLA1KZ92 1463 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 IGKV5-2P06315 115 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 NEXNQ0ZGT2 675 aa20.63■□□□□ 0.89
LSM1-204ENST00000522515 CWF19L2Q2TBE0 894 aaKnown RBP20.63■□□□□ 0.89
LSM1-204ENST00000522515 ANKRD36CQ5JPF3 1778 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 PSDA5PKW4 1024 aaPredicted RBP20.62■□□□□ 0.89
LSM1-204ENST00000522515 MS4A1P11836 297 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 GPTP24298 496 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 PDE3AQ14432 1141 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 HSP90AB3PQ58FF7 597 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 TBC1D9BQ66K14 1250 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 ZNF34Q8IZ26 560 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 TMEM57Q8N5G2 664 aa20.62■□□□□ 0.89
LSM1-204ENST00000522515 ATP10DQ9P241 1426 aa20.61■□□□□ 0.89
LSM1-204ENST00000522515 INTS3Q68E01 1043 aaKnown RBP20.61■□□□□ 0.89
LSM1-204ENST00000522515 LINS1Q8NG48 757 aa20.61■□□□□ 0.89
LSM1-204ENST00000522515 ISCA1Q9BUE6 129 aa20.61■□□□□ 0.89
LSM1-204ENST00000522515 CCT4P50991 539 aaKnown RBP20.6■□□□□ 0.89
LSM1-204ENST00000522515 SRCIN1Q9C0H9 1055 aa20.6■□□□□ 0.89
LSM1-204ENST00000522515 NIP7Q9Y221 180 aaKnown RBP eCLIP20.6■□□□□ 0.89
LSM1-204ENST00000522515 N4BP2Q86UW6 1770 aaPredicted RBP20.6■□□□□ 0.89
LSM1-204ENST00000522515 UBN2Q6ZU65 1347 aa20.6■□□□□ 0.89
LSM1-204ENST00000522515 NEURL1BA8MQ27 555 aa20.59■□□□□ 0.89
LSM1-204ENST00000522515 BICDL1Q6ZP65 573 aa20.59■□□□□ 0.89
LSM1-204ENST00000522515 CASZ1Q86V15 1759 aa20.59■□□□□ 0.89
LSM1-204ENST00000522515 TRIM28Q13263 835 aaKnown RBP20.59■□□□□ 0.89
LSM1-204ENST00000522515 MSL1Q68DK7 614 aa20.59■□□□□ 0.89
LSM1-204ENST00000522515 NLGN1Q8N2Q7 840 aa20.59■□□□□ 0.89
LSM1-204ENST00000522515 COG6Q9Y2V7 657 aa20.59■□□□□ 0.89
LSM1-204ENST00000522515 AFDNP55196 1824 aaKnown RBP20.58■□□□□ 0.89
LSM1-204ENST00000522515 NFIXQ14938 502 aa20.58■□□□□ 0.88
LSM1-204ENST00000522515 NLRP10Q86W26 655 aa20.58■□□□□ 0.88
LSM1-204ENST00000522515 ALDH1L1O75891 902 aa20.57■□□□□ 0.88
LSM1-204ENST00000522515 TM4SF1P30408 202 aa20.57■□□□□ 0.88
LSM1-204ENST00000522515 IRX6P78412 446 aaPredicted RBP20.57■□□□□ 0.88
LSM1-204ENST00000522515 ITPRIPQ8IWB1 547 aa20.57■□□□□ 0.88
LSM1-204ENST00000522515 CCDC191Q8NCU4 936 aa20.57■□□□□ 0.88
LSM1-204ENST00000522515 SLC16A10Q8TF71 515 aa20.57■□□□□ 0.88
LSM1-204ENST00000522515 SETDB2Q96T68 719 aa20.57■□□□□ 0.88
LSM1-204ENST00000522515 CWC25Q9NXE8 425 aaPredicted RBP20.56■□□□□ 0.88
LSM1-204ENST00000522515 GCKRQ14397 625 aa20.55■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms