RNA–Protein interactions for RNA: ENST00000519474.5

HDAC3-215, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 736 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-215ENST00000519474 NRXN2Q9P2S2 1712 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 UTRNP46939 3433 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 ZNF853P0CG23 659 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 PDE6BP35913 854 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 TPTE2Q6XPS3 522 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 PDZRN3Q9UPQ7 1066 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 NIP7Q9Y221 180 aaKnown RBP eCLIP12.23□□□□□ -0.45
HDAC3-215ENST00000519474 ZNF652Q9Y2D9 606 aa12.23□□□□□ -0.45
HDAC3-215ENST00000519474 MAP3K15Q6ZN16 1313 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 KLRG2A4D1S0 409 aaPredicted RBP12.22□□□□□ -0.45
HDAC3-215ENST00000519474 ANXA1P04083 346 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 PROSER3Q2NL68 480 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 NBPF5PQ86XG9 351 aaPredicted RBP12.22□□□□□ -0.45
HDAC3-215ENST00000519474 CNBD1Q8NA66 436 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 NECTIN2Q92692 538 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 ZNF622Q969S3 477 aaKnown RBP eCLIP12.22□□□□□ -0.45
HDAC3-215ENST00000519474 CFAP44Q96MT7 982 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 KDM3BQ7LBC6 1761 aa12.22□□□□□ -0.45
HDAC3-215ENST00000519474 ERBB4Q15303 1308 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 FAM177BA6PVY3 158 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 SRGNP10124 158 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 PRELPP51888 382 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 C1QTNF8P60827 252 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 C9orf131Q5VYM1 1079 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 ZNF34Q8IZ26 560 aa12.21□□□□□ -0.45
HDAC3-215ENST00000519474 ATP10DQ9P241 1426 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 ADCY9O60503 1353 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 ANP32CO43423 234 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 ST5P78524 1137 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 SUSD4Q5VX71 490 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 GIGYF2Q6Y7W6 1299 aaKnown RBP12.2□□□□□ -0.46
HDAC3-215ENST00000519474 COPS6Q7L5N1 327 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 ZNF526Q8TF50 670 aaPredicted RBP12.2□□□□□ -0.46
HDAC3-215ENST00000519474 ZBTB3Q9H5J0 574 aa12.2□□□□□ -0.46
HDAC3-215ENST00000519474 BRCA1P38398 1863 aaKnown RBP12.2□□□□□ -0.46
HDAC3-215ENST00000519474 NPHP1O15259 732 aa12.19□□□□□ -0.46
HDAC3-215ENST00000519474 EIF5BO60841 1220 aaKnown RBP12.19□□□□□ -0.46
HDAC3-215ENST00000519474 STYK1Q6J9G0 422 aa12.19□□□□□ -0.46
HDAC3-215ENST00000519474 MASTLQ96GX5 879 aa12.19□□□□□ -0.46
HDAC3-215ENST00000519474 GPBP1L1Q9HC44 474 aaPredicted RBP12.19□□□□□ -0.46
HDAC3-215ENST00000519474 DDX21Q9NR30 783 aaKnown RBP eCLIP12.19□□□□□ -0.46
HDAC3-215ENST00000519474 MBIPQ9NS73 344 aa12.19□□□□□ -0.46
HDAC3-215ENST00000519474 SENP3-EIF4A1A0A087X0R7 540 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 C21orf2O43822 256 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 GPTP24298 496 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 AIMP1Q12904 312 aaKnown RBP12.18□□□□□ -0.46
HDAC3-215ENST00000519474 DUSP27Q5VZP5 1158 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 KIF6Q6ZMV9 814 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 XAGE3Q8WTP9 111 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 C7orf43Q8WVR3 580 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 CNKSR1Q969H4 720 aa12.18□□□□□ -0.46
HDAC3-215ENST00000519474 ZNF219Q9P2Y4 722 aaPredicted RBP12.18□□□□□ -0.46
HDAC3-215ENST00000519474 GTF2E1P29083 439 aaPredicted RBP12.17□□□□□ -0.46
HDAC3-215ENST00000519474 GNAI1P63096 354 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 RASSF7Q02833 373 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 ERFEQ4G0M1 354 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 NUTM1Q86Y26 1132 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 MRS2Q9HD23 443 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 IFT57Q9NWB7 429 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 RNF181Q9P0P0 153 aa12.17□□□□□ -0.46
HDAC3-215ENST00000519474 ARFGEF1Q9Y6D6 1849 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 UBN2Q6ZU65 1347 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 NFKBIEO00221 500 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 ELL2O00472 640 aaPredicted RBP12.16□□□□□ -0.46
HDAC3-215ENST00000519474 KIF3CO14782 793 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 HOXB7P09629 217 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 NPR1P16066 1061 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 TCIRG1Q13488 830 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 WWC1Q8IX03 1113 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 C8orf58Q8NAV2 365 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 NYXQ9GZU5 481 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 CHPF2Q9P2E5 772 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 ANKRD31Q8N7Z5 1873 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 SCN7AQ01118 1682 aa12.16□□□□□ -0.46
HDAC3-215ENST00000519474 GOLGB1Q14789 3259 aaKnown RBP12.15□□□□□ -0.46
HDAC3-215ENST00000519474 LMNB1P20700 586 aa12.15□□□□□ -0.46
HDAC3-215ENST00000519474 CALD1Q05682 793 aaKnown RBP12.15□□□□□ -0.46
HDAC3-215ENST00000519474 CCDC27Q2M243 656 aa12.15□□□□□ -0.46
HDAC3-215ENST00000519474 SLC10A5Q5PT55 438 aa12.15□□□□□ -0.46
HDAC3-215ENST00000519474 HDGFL1Q5TGJ6 251 aa12.15□□□□□ -0.46
HDAC3-215ENST00000519474 PRPF40BQ6NWY9 871 aaKnown RBP12.15□□□□□ -0.46
HDAC3-215ENST00000519474 BCORQ6W2J9 1755 aa12.15□□□□□ -0.46
HDAC3-215ENST00000519474 NUP98P52948 1817 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 NTSR2O95665 410 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 ALDH1B1P30837 517 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 PARP10Q53GL7 1025 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 ANKRD13DQ6ZTN6 518 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 PPP1R42Q7Z4L9 355 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 SYNE4Q8N205 404 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 TSPYL6Q8N831 410 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 NMRK2Q9NPI5 230 aa12.14□□□□□ -0.47
HDAC3-215ENST00000519474 DBF4Q9UBU7 674 aaPredicted RBP12.14□□□□□ -0.47
HDAC3-215ENST00000519474 LAMB4A4D0S4 1761 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 SBF1O95248 1867 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 CRY2Q49AN0 593 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 NLRP10Q86W26 655 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 PLBD2Q8NHP8 589 aa12.13□□□□□ -0.47
HDAC3-215ENST00000519474 UTP14AQ9BVJ6 771 aaKnown RBP12.13□□□□□ -0.47
HDAC3-215ENST00000519474 PHAXQ9H814 394 aaKnown RBP12.13□□□□□ -0.47
HDAC3-215ENST00000519474 RRAGCQ9HB90 399 aa12.13□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms