RNA–Protein interactions for RNA: ENST00000512683.1

VEGFA-216, Transcript of vascular endothelial growth factor A, humanhuman

TSL 1 (best)

Gene VEGFA, Length 475 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VEGFA-216ENST00000512683 NBPF5PQ86XG9 351 aaPredicted RBP16.71■□□□□ 0.27
VEGFA-216ENST00000512683 TAOK3Q9H2K8 898 aa16.71■□□□□ 0.27
VEGFA-216ENST00000512683 PNNQ9H307 717 aaKnown RBP16.71■□□□□ 0.27
VEGFA-216ENST00000512683 NPR1P16066 1061 aa16.7■□□□□ 0.26
VEGFA-216ENST00000512683 SIPA1L3O60292 1781 aaPredicted RBP16.69■□□□□ 0.26
VEGFA-216ENST00000512683 POTECB2RU33 542 aa16.69■□□□□ 0.26
VEGFA-216ENST00000512683 PRPF40BQ6NWY9 871 aaKnown RBP16.69■□□□□ 0.26
VEGFA-216ENST00000512683 MCM10Q7L590 875 aa16.69■□□□□ 0.26
VEGFA-216ENST00000512683 C7orf43Q8WVR3 580 aa16.69■□□□□ 0.26
VEGFA-216ENST00000512683 UBR2Q8IWV8 1755 aa16.69■□□□□ 0.26
VEGFA-216ENST00000512683 ALDH1B1P30837 517 aa16.68■□□□□ 0.26
VEGFA-216ENST00000512683 ERVV-1B6SEH8 477 aa16.67■□□□□ 0.26
VEGFA-216ENST00000512683 RTKN2Q8IZC4 609 aa16.67■□□□□ 0.26
VEGFA-216ENST00000512683 NIP7Q9Y221 180 aaKnown RBP eCLIP16.67■□□□□ 0.26
VEGFA-216ENST00000512683 IQCA1LA6NCM1 817 aa16.66■□□□□ 0.26
VEGFA-216ENST00000512683 NBPF26B4DH59 902 aa16.66■□□□□ 0.26
VEGFA-216ENST00000512683 CCDC93Q567U6 631 aa16.66■□□□□ 0.26
VEGFA-216ENST00000512683 NBPF10Q6P3W6 841 aaKnown RBP16.66■□□□□ 0.26
VEGFA-216ENST00000512683 CCDC24Q8N4L8 307 aa16.66■□□□□ 0.26
VEGFA-216ENST00000512683 NBPF15Q8N660 670 aa16.66■□□□□ 0.26
VEGFA-216ENST00000512683 GRIPAP1Q4V328 841 aa16.65■□□□□ 0.26
VEGFA-216ENST00000512683 NYXQ9GZU5 481 aa16.65■□□□□ 0.26
VEGFA-216ENST00000512683 ZNF219Q9P2Y4 722 aaPredicted RBP16.65■□□□□ 0.26
VEGFA-216ENST00000512683 PRAMEF22A3QJZ6 481 aa16.64■□□□□ 0.25
VEGFA-216ENST00000512683 HTRA3P83110 453 aa16.64■□□□□ 0.25
VEGFA-216ENST00000512683 FKBP4Q02790 459 aaKnown RBP eCLIP16.64■□□□□ 0.25
VEGFA-216ENST00000512683 DCTN1Q14203 1278 aa16.64■□□□□ 0.25
VEGFA-216ENST00000512683 CC2D2BQ6DHV5 1058 aa16.64■□□□□ 0.25
VEGFA-216ENST00000512683 CHADLQ6NUI6 762 aa16.64■□□□□ 0.25
VEGFA-216ENST00000512683 L3MBTL3Q96JM7 780 aaPredicted RBP16.64■□□□□ 0.25
VEGFA-216ENST00000512683 GTF2E1P29083 439 aaPredicted RBP16.63■□□□□ 0.25
VEGFA-216ENST00000512683 DDNO94850 711 aaPredicted RBP16.62■□□□□ 0.25
VEGFA-216ENST00000512683 PIP4K2AP48426 406 aaPredicted RBP16.62■□□□□ 0.25
VEGFA-216ENST00000512683 PLEKHF1Q96S99 279 aa16.62■□□□□ 0.25
VEGFA-216ENST00000512683 CREBZFQ9NS37 354 aa16.62■□□□□ 0.25
VEGFA-216ENST00000512683 AFDNP55196 1824 aaKnown RBP16.61■□□□□ 0.25
VEGFA-216ENST00000512683 NFE2L2Q16236 605 aa16.61■□□□□ 0.25
VEGFA-216ENST00000512683 BABAM1Q9NWV8 329 aa16.61■□□□□ 0.25
VEGFA-216ENST00000512683 TNRC6CQ9HCJ0 1690 aaKnown RBP16.61■□□□□ 0.25
VEGFA-216ENST00000512683 ERBB4Q15303 1308 aa16.61■□□□□ 0.25
VEGFA-216ENST00000512683 DLG5Q8TDM6 1919 aa16.6■□□□□ 0.25
VEGFA-216ENST00000512683 EIF4A1P60842 406 aaKnown RBP16.6■□□□□ 0.25
VEGFA-216ENST00000512683 HLFQ16534 295 aa16.6■□□□□ 0.25
VEGFA-216ENST00000512683 CRY2Q49AN0 593 aa16.6■□□□□ 0.25
VEGFA-216ENST00000512683 LDHDQ86WU2 507 aa16.6■□□□□ 0.25
VEGFA-216ENST00000512683 PSMD1Q99460 953 aa16.6■□□□□ 0.25
VEGFA-216ENST00000512683 SBF1O95248 1867 aa16.6■□□□□ 0.25
VEGFA-216ENST00000512683 HOXA10P31260 410 aaPredicted RBP16.59■□□□□ 0.25
VEGFA-216ENST00000512683 KIF6Q6ZMV9 814 aa16.59■□□□□ 0.25
VEGFA-216ENST00000512683 MIS18AQ9NYP9 233 aa16.59■□□□□ 0.25
VEGFA-216ENST00000512683 MAP3K15Q6ZN16 1313 aa16.59■□□□□ 0.25
VEGFA-216ENST00000512683 DLEC1Q9Y238 1755 aa16.59■□□□□ 0.25
VEGFA-216ENST00000512683 PNMA8AQ86V59 439 aaPredicted RBP16.58■□□□□ 0.24
VEGFA-216ENST00000512683 TAF1DQ9H5J8 278 aaPredicted RBP16.58■□□□□ 0.24
VEGFA-216ENST00000512683 WDR90Q96KV7 1748 aa16.57■□□□□ 0.24
VEGFA-216ENST00000512683 SCN7AQ01118 1682 aa16.57■□□□□ 0.24
VEGFA-216ENST00000512683 IBTKQ9P2D0 1353 aaPredicted RBP16.57■□□□□ 0.24
VEGFA-216ENST00000512683 MAPK8IP3Q9UPT6 1336 aa16.57■□□□□ 0.24
VEGFA-216ENST00000512683 FZD9O00144 591 aa16.57■□□□□ 0.24
VEGFA-216ENST00000512683 SYNE4Q8N205 404 aa16.57■□□□□ 0.24
VEGFA-216ENST00000512683 JDP2Q8WYK2 163 aa16.57■□□□□ 0.24
VEGFA-216ENST00000512683 IARSP41252 1262 aaKnown RBP16.56■□□□□ 0.24
VEGFA-216ENST00000512683 PARP10Q53GL7 1025 aa16.56■□□□□ 0.24
VEGFA-216ENST00000512683 COL13A1Q5TAT6 717 aaPredicted RBP16.56■□□□□ 0.24
VEGFA-216ENST00000512683 CRAMP1Q96RY5 1269 aa16.56■□□□□ 0.24
VEGFA-216ENST00000512683 VPS33BQ9H267 617 aa16.56■□□□□ 0.24
VEGFA-216ENST00000512683 ZNF277Q9NRM2 450 aaPredicted RBP16.56■□□□□ 0.24
VEGFA-216ENST00000512683 HACL1Q9UJ83 578 aa16.56■□□□□ 0.24
VEGFA-216ENST00000512683 RRP7AQ9Y3A4 280 aaKnown RBP16.56■□□□□ 0.24
VEGFA-216ENST00000512683 RALBP1Q15311 655 aa16.55■□□□□ 0.24
VEGFA-216ENST00000512683 GIGYF2Q6Y7W6 1299 aaKnown RBP16.55■□□□□ 0.24
VEGFA-216ENST00000512683 PPP1R42Q7Z4L9 355 aa16.55■□□□□ 0.24
VEGFA-216ENST00000512683 ZNF34Q8IZ26 560 aa16.55■□□□□ 0.24
VEGFA-216ENST00000512683 GPC2Q8N158 579 aa16.55■□□□□ 0.24
VEGFA-216ENST00000512683 PASKQ96RG2 1323 aa16.54■□□□□ 0.24
VEGFA-216ENST00000512683 FAM177BA6PVY3 158 aa16.54■□□□□ 0.24
VEGFA-216ENST00000512683 SLC10A5Q5PT55 438 aa16.54■□□□□ 0.24
VEGFA-216ENST00000512683 NGEFQ8N5V2 710 aa16.54■□□□□ 0.24
VEGFA-216ENST00000512683 RBM17Q96I25 401 aaKnown RBP16.54■□□□□ 0.24
VEGFA-216ENST00000512683 TMX4Q9H1E5 349 aaPredicted RBP16.54■□□□□ 0.24
VEGFA-216ENST00000512683 RIC1Q4ADV7 1423 aa16.53■□□□□ 0.24
VEGFA-216ENST00000512683 ITGBL1O95965 494 aaPredicted RBP16.53■□□□□ 0.24
VEGFA-216ENST00000512683 HSPA1AP0DMV8 641 aaKnown RBP16.53■□□□□ 0.24
VEGFA-216ENST00000512683 HSPA1BP0DMV9 641 aaKnown RBP16.53■□□□□ 0.24
VEGFA-216ENST00000512683 LMOD3Q0VAK6 560 aa16.53■□□□□ 0.24
VEGFA-216ENST00000512683 RPGRQ92834 1020 aaKnown RBP16.53■□□□□ 0.24
VEGFA-216ENST00000512683 RNF123Q5XPI4 1314 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 EPHX2P34913 555 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 EIF6P56537 245 aaKnown RBP16.52■□□□□ 0.24
VEGFA-216ENST00000512683 SUSD4Q5VX71 490 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 TTLL7Q6ZT98 887 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 TNS4Q8IZW8 715 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 NLRP3Q96P20 1036 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 TSPYL4Q9UJ04 414 aa16.52■□□□□ 0.24
VEGFA-216ENST00000512683 ANKRD31Q8N7Z5 1873 aa16.52■□□□□ 0.23
VEGFA-216ENST00000512683 TMEM88BA6NKF7 163 aa16.51■□□□□ 0.23
VEGFA-216ENST00000512683 POTEIP0CG38 1075 aa16.51■□□□□ 0.23
VEGFA-216ENST00000512683 POTEJP0CG39 1038 aa16.51■□□□□ 0.23
VEGFA-216ENST00000512683 MYL6BP14649 208 aa16.51■□□□□ 0.23
VEGFA-216ENST00000512683 HSP90AB3PQ58FF7 597 aa16.51■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms