RNA–Protein interactions for RNA: ENST00000495039.1

VPS50-219, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 1 (best)

Gene VPS50, Length 1,115 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-219ENST00000495039 SLC9A9Q8IVB4 645 aa9.61□□□□□ -0.87
VPS50-219ENST00000495039 MDFIQ99750 246 aa9.61□□□□□ -0.87
VPS50-219ENST00000495039 SEMA6BQ9H3T3 888 aa9.61□□□□□ -0.87
VPS50-219ENST00000495039 ALG2Q9H553 416 aa9.61□□□□□ -0.87
VPS50-219ENST00000495039 PRRT3Q5FWE3 981 aa9.6□□□□□ -0.87
VPS50-219ENST00000495039 SERTM1A2A2V5 107 aa9.59□□□□□ -0.87
VPS50-219ENST00000495039 USP17L5A8MUK1 530 aa9.59□□□□□ -0.87
VPS50-219ENST00000495039 ADARB2-AS1A8MUL3 147 aa9.59□□□□□ -0.87
VPS50-219ENST00000495039 TRIM50Q86XT4 487 aa9.59□□□□□ -0.87
VPS50-219ENST00000495039 TNS4Q8IZW8 715 aa9.58□□□□□ -0.88
VPS50-219ENST00000495039 APBA3O96018 575 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 ITGB7P26010 798 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 NEUROD1Q13562 356 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 TBCELQ5QJ74 424 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 DEPDC4Q8N2C3 294 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 RHPN1Q8TCX5 695 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 TNFRSF25Q93038 417 aa9.57□□□□□ -0.88
VPS50-219ENST00000495039 M0R082 166 aa9.56□□□□□ -0.88
VPS50-219ENST00000495039 ZNF417Q8TAU3 575 aa9.56□□□□□ -0.88
VPS50-219ENST00000495039 C7orf43Q8WVR3 580 aa9.56□□□□□ -0.88
VPS50-219ENST00000495039 ZNF587Q96SQ5 575 aaPredicted RBP9.56□□□□□ -0.88
VPS50-219ENST00000495039 PRDM6Q9NQX0 595 aa9.56□□□□□ -0.88
VPS50-219ENST00000495039 CHMP3Q9Y3E7 222 aa9.56□□□□□ -0.88
VPS50-219ENST00000495039 SPEM2Q0P670 501 aa9.55□□□□□ -0.88
VPS50-219ENST00000495039 SFSWAPQ12872 951 aaKnown RBP9.55□□□□□ -0.88
VPS50-219ENST00000495039 TPCN2Q8NHX9 752 aa9.55□□□□□ -0.88
VPS50-219ENST00000495039 SLC30A3Q99726 388 aa9.55□□□□□ -0.88
VPS50-219ENST00000495039 ATP1A2P50993 1020 aa9.54□□□□□ -0.88
VPS50-219ENST00000495039 PSMA6P60900 246 aaKnown RBP9.54□□□□□ -0.88
VPS50-219ENST00000495039 C1orf53Q5VUE5 145 aa9.54□□□□□ -0.88
VPS50-219ENST00000495039 NACC1Q96RE7 527 aa9.54□□□□□ -0.88
VPS50-219ENST00000495039 ADH7P40394 386 aa9.53□□□□□ -0.88
VPS50-219ENST00000495039 ZMYM1Q5SVZ6 1142 aa9.53□□□□□ -0.88
VPS50-219ENST00000495039 SH3PXD2AQ5TCZ1 1133 aa9.53□□□□□ -0.88
VPS50-219ENST00000495039 BRD7Q9NPI1 651 aa9.53□□□□□ -0.88
VPS50-219ENST00000495039 ANKIB1Q9P2G1 1089 aa9.53□□□□□ -0.88
VPS50-219ENST00000495039 ALBP02768 609 aa9.52□□□□□ -0.89
VPS50-219ENST00000495039 HIRAP54198 1017 aaPredicted RBP9.52□□□□□ -0.89
VPS50-219ENST00000495039 TRIM28Q13263 835 aaKnown RBP9.52□□□□□ -0.89
VPS50-219ENST00000495039 RSPO4Q2I0M5 234 aaPredicted RBP9.52□□□□□ -0.89
VPS50-219ENST00000495039 PLEKHM2Q8IWE5 1019 aa9.52□□□□□ -0.89
VPS50-219ENST00000495039 MICALL1Q8N3F8 863 aa9.52□□□□□ -0.89
VPS50-219ENST00000495039 CEP63Q96MT8 703 aa9.52□□□□□ -0.89
VPS50-219ENST00000495039 STARD13Q9Y3M8 1113 aa9.52□□□□□ -0.89
VPS50-219ENST00000495039 FAM229AH3BQW9 127 aa9.51□□□□□ -0.89
VPS50-219ENST00000495039 KCNQ4P56696 695 aa9.51□□□□□ -0.89
VPS50-219ENST00000495039 COL9A3Q14050 684 aaPredicted RBP9.51□□□□□ -0.89
VPS50-219ENST00000495039 CCDC102BQ68D86 513 aa9.51□□□□□ -0.89
VPS50-219ENST00000495039 TSPAN10Q9H1Z9 355 aaPredicted RBP9.51□□□□□ -0.89
VPS50-219ENST00000495039 TPSG1Q9NRR2 321 aa9.51□□□□□ -0.89
VPS50-219ENST00000495039 KIAA1024Q9UPX6 916 aa9.51□□□□□ -0.89
VPS50-219ENST00000495039 USP17L3A6NCW0 530 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 USP17L4A6NCW7 530 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 RAD21O60216 631 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 NKAPLQ5M9Q1 402 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 USP17L2Q6R6M4 530 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 POTEAQ6S8J7 498 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 USP17L1Q7RTZ2 530 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 RAB44Q7Z6P3 723 aaPredicted RBP9.5□□□□□ -0.89
VPS50-219ENST00000495039 POM121Q96HA1 1249 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 HSH2DQ96JZ2 352 aa9.5□□□□□ -0.89
VPS50-219ENST00000495039 M0R2N6 131 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 ZBTB7BO15156 539 aaPredicted RBP9.49□□□□□ -0.89
VPS50-219ENST00000495039 NID1P14543 1247 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 C8orf86Q6ZUL3 223 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 KRTAP4-8Q9BYQ9 185 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 PHACTR1Q9C0D0 580 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 KCNH4Q9UQ05 1017 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 HCN4Q9Y3Q4 1203 aa9.49□□□□□ -0.89
VPS50-219ENST00000495039 SFI1A8K8P3 1242 aa9.48□□□□□ -0.89
VPS50-219ENST00000495039 CLDN10P78369 228 aa9.48□□□□□ -0.89
VPS50-219ENST00000495039 TYRO3Q06418 890 aa9.48□□□□□ -0.89
VPS50-219ENST00000495039 LARGE2Q8N3Y3 721 aa9.47□□□□□ -0.89
VPS50-219ENST00000495039 SUSD3Q96L08 255 aa9.47□□□□□ -0.89
VPS50-219ENST00000495039 PALM3A6NDB9 673 aaPredicted RBP9.46□□□□□ -0.9
VPS50-219ENST00000495039 DYRK3O43781 588 aa9.46□□□□□ -0.9
VPS50-219ENST00000495039 ATP9BO43861 1147 aa9.46□□□□□ -0.9
VPS50-219ENST00000495039 C20orf204Q6ZNR8 217 aa9.46□□□□□ -0.9
VPS50-219ENST00000495039 OGFOD1Q8N543 542 aa9.46□□□□□ -0.9
VPS50-219ENST00000495039 RBM19Q9Y4C8 960 aaKnown RBP9.46□□□□□ -0.9
VPS50-219ENST00000495039 SCO2A0A1W2PP80 73 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 POM121CA8CG34 1229 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 PPP1R12BO60237 982 aaPredicted RBP9.45□□□□□ -0.9
VPS50-219ENST00000495039 LILRB5O75023 590 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 GRIK4Q16099 956 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 HIF1AQ16665 826 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 ADAMTS19Q8TE59 1207 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 BHMTQ93088 406 aa9.45□□□□□ -0.9
VPS50-219ENST00000495039 TRAPPC3LQ5T215 181 aa9.44□□□□□ -0.9
VPS50-219ENST00000495039 SIX5Q8N196 739 aa9.44□□□□□ -0.9
VPS50-219ENST00000495039 ZNF280CQ8ND82 737 aa9.44□□□□□ -0.9
VPS50-219ENST00000495039 PSMG3-AS1Q96PY0 264 aa9.44□□□□□ -0.9
VPS50-219ENST00000495039 UCN2Q96RP3 112 aa9.44□□□□□ -0.9
VPS50-219ENST00000495039 MKRN1Q9UHC7 482 aaKnown RBP9.44□□□□□ -0.9
VPS50-219ENST00000495039 C9orf172C9J069 976 aa9.43□□□□□ -0.9
VPS50-219ENST00000495039 TSEN2Q8NCE0 465 aaKnown RBP9.43□□□□□ -0.9
VPS50-219ENST00000495039 UBE2OQ9C0C9 1292 aaKnown RBP9.43□□□□□ -0.9
VPS50-219ENST00000495039 EFCC1Q9HA90 598 aa9.43□□□□□ -0.9
VPS50-219ENST00000495039 ELNP15502 786 aa9.42□□□□□ -0.9
VPS50-219ENST00000495039 UBTFP17480 764 aaKnown RBP9.42□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 173.3 ms