RNA–Protein interactions for RNA: ENST00000494012.1

MACF1-222, Transcript of microtubule-actin crosslinking factor 1, human

TSL 4

Gene MACF1, Length 667 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
MACF1-222	ENST00000494012	CARMIL3	Q8ND23	1372 aa		12.88	□□□□□ -0.35
MACF1-222	ENST00000494012	MAP3K15	Q6ZN16	1313 aa		12.88	□□□□□ -0.35
MACF1-222	ENST00000494012	ARFGEF2	Q9Y6D5	1785 aa		12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	ERVV-1	B6SEH8	477 aa		12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	HNRNPU	Q00839	825 aa	Known RBP eCLIP	12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	KLHL34	Q8N239	644 aa		12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	STK31	Q9BXU1	1019 aa		12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	FHDC1	Q9C0D6	1143 aa	Predicted RBP	12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	SPINK5	Q9NQ38	1064 aa	Predicted RBP	12.87	□□□□□ -0.35
MACF1-222	ENST00000494012	TM4SF1	P30408	202 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	EXOSC9	Q06265	439 aa	Known RBP	12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	NFIX	Q14938	502 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	PROSER3	Q2NL68	480 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	LRP10	Q7Z4F1	713 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	TSPYL6	Q8N831	410 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	SETDB2	Q96T68	719 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	CD2AP	Q9Y5K6	639 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	C10orf71	Q711Q0	1435 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	ATP10D	Q9P241	1426 aa		12.86	□□□□□ -0.35
MACF1-222	ENST00000494012	POLRMT	O00411	1230 aa	Known RBP	12.85	□□□□□ -0.35
MACF1-222	ENST00000494012	ANXA1	P04083	346 aa		12.85	□□□□□ -0.35
MACF1-222	ENST00000494012	DDR1	Q08345	913 aa		12.85	□□□□□ -0.35
MACF1-222	ENST00000494012	SLFN5	Q08AF3	891 aa		12.85	□□□□□ -0.35
MACF1-222	ENST00000494012	TBC1D9B	Q66K14	1250 aa		12.85	□□□□□ -0.35
MACF1-222	ENST00000494012	ZBTB3	Q9H5J0	574 aa		12.85	□□□□□ -0.35
MACF1-222	ENST00000494012	AIMP1	Q12904	312 aa	Known RBP	12.84	□□□□□ -0.35
MACF1-222	ENST00000494012	BICDL1	Q6ZP65	573 aa		12.84	□□□□□ -0.35
MACF1-222	ENST00000494012	TTLL7	Q6ZT98	887 aa		12.84	□□□□□ -0.35
MACF1-222	ENST00000494012	COPS6	Q7L5N1	327 aa		12.84	□□□□□ -0.35
MACF1-222	ENST00000494012	XAGE3	Q8WTP9	111 aa		12.84	□□□□□ -0.35
MACF1-222	ENST00000494012	SYT17	Q9BSW7	474 aa		12.84	□□□□□ -0.35
MACF1-222	ENST00000494012	KIAA1551	Q9HCM1	1747 aa		12.83	□□□□□ -0.36
MACF1-222	ENST00000494012	HSP90AB3P	Q58FF7	597 aa		12.83	□□□□□ -0.36
MACF1-222	ENST00000494012	GIGYF2	Q6Y7W6	1299 aa	Known RBP	12.83	□□□□□ -0.36
MACF1-222	ENST00000494012	NIP7	Q9Y221	180 aa	Known RBP eCLIP	12.83	□□□□□ -0.36
MACF1-222	ENST00000494012	DLEC1	Q9Y238	1755 aa		12.83	□□□□□ -0.36
MACF1-222	ENST00000494012	ZBED9	Q6R2W3	1325 aa		12.83	□□□□□ -0.36
MACF1-222	ENST00000494012	N4BP2	Q86UW6	1770 aa	Predicted RBP	12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	NPHP1	O15259	732 aa		12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	VAMP4	O75379	141 aa		12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	DDX58	O95786	925 aa	Known RBP	12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	SERPINB2	P05120	415 aa		12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	HLF	Q16534	295 aa		12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	PLBD2	Q8NHP8	589 aa		12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	ANKRD31	Q8N7Z5	1873 aa		12.82	□□□□□ -0.36
MACF1-222	ENST00000494012	IBTK	Q9P2D0	1353 aa	Predicted RBP	12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	BRCA1	P38398	1863 aa	Known RBP	12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	ANKRD13D	Q6ZTN6	518 aa		12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	NBPF5P	Q86XG9	351 aa	Predicted RBP	12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	CNBD1	Q8NA66	436 aa		12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	ZNF428	Q96B54	188 aa		12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	CDCA7L	Q96GN5	454 aa		12.81	□□□□□ -0.36
MACF1-222	ENST00000494012	PXDNL	A1KZ92	1463 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	DCAF8L1	A6NGE4	600 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	SLC4A2	P04920	1241 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	CT47B1	P0C2W7	299 aa	Predicted RBP	12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	TGFB2	P61812	414 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	ST5	P78524	1137 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	PARP10	Q53GL7	1025 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	TPTE2	Q6XPS3	522 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	TRMT2A	Q8IZ69	625 aa	Known RBP	12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	NYX	Q9GZU5	481 aa		12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	PHAX	Q9H814	394 aa	Known RBP	12.8	□□□□□ -0.36
MACF1-222	ENST00000494012	GPT	P24298	496 aa		12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	PRR5L	Q6MZQ0	368 aa		12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	RIC3	Q7Z5B4	369 aa		12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	ZNF34	Q8IZ26	560 aa		12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	NLGN2	Q8NFZ4	835 aa		12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	RNF123	Q5XPI4	1314 aa		12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	COL11A2	P13942	1736 aa	Predicted RBP	12.79	□□□□□ -0.36
MACF1-222	ENST00000494012	TCERG1	O14776	1098 aa	Known RBP	12.78	□□□□□ -0.36
MACF1-222	ENST00000494012	GTF2E1	P29083	439 aa	Predicted RBP	12.78	□□□□□ -0.36
MACF1-222	ENST00000494012	TCIRG1	Q13488	830 aa		12.78	□□□□□ -0.36
MACF1-222	ENST00000494012	PPP1R42	Q7Z4L9	355 aa		12.78	□□□□□ -0.36
MACF1-222	ENST00000494012	PDZRN3	Q9UPQ7	1066 aa		12.78	□□□□□ -0.36
MACF1-222	ENST00000494012	UBN2	Q6ZU65	1347 aa		12.78	□□□□□ -0.36
MACF1-222	ENST00000494012	LAMB2	P55268	1798 aa		12.77	□□□□□ -0.36
MACF1-222	ENST00000494012	PDE6B	P35913	854 aa		12.77	□□□□□ -0.37
MACF1-222	ENST00000494012	FLII	Q13045	1269 aa		12.77	□□□□□ -0.37
MACF1-222	ENST00000494012	KSR2	Q6VAB6	950 aa		12.77	□□□□□ -0.37
MACF1-222	ENST00000494012	BRIP1	Q9BX63	1249 aa		12.77	□□□□□ -0.37
MACF1-222	ENST00000494012	RIC1	Q4ADV7	1423 aa		12.77	□□□□□ -0.37
MACF1-222	ENST00000494012	TNRC6C	Q9HCJ0	1690 aa	Known RBP	12.77	□□□□□ -0.37
MACF1-222	ENST00000494012	ARFGEF1	Q9Y6D6	1849 aa		12.76	□□□□□ -0.37
MACF1-222	ENST00000494012	FAM177B	A6PVY3	158 aa		12.76	□□□□□ -0.37
MACF1-222	ENST00000494012	NEXN	Q0ZGT2	675 aa		12.76	□□□□□ -0.37
MACF1-222	ENST00000494012	FKBP5	Q13451	457 aa	Predicted RBP	12.76	□□□□□ -0.37
MACF1-222	ENST00000494012	MAP3K2	Q9Y2U5	619 aa		12.76	□□□□□ -0.37
MACF1-222	ENST00000494012	PI4KAP2	A4QPH2	592 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	ADCY9	O60503	1353 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	NTSR2	O95665	410 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	CACNA1S	Q13698	1873 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	ALDH1L2	Q3SY69	923 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	SUSD4	Q5VX71	490 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	G2E3	Q7L622	706 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	NLRP10	Q86W26	655 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	PI4KAP1	Q8N8J0	262 aa		12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	METTL22	Q9BUU2	404 aa	Predicted RBP	12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	UTP14A	Q9BVJ6	771 aa	Known RBP	12.75	□□□□□ -0.37
MACF1-222	ENST00000494012	DDX60	Q8IY21	1712 aa	Known RBP	12.74	□□□□□ -0.37

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