RNA–Protein interactions for RNA: ENST00000493853.1

RBM39-238, Transcript of RNA binding motif protein 39, human

TSL 4

Gene RBM39, Length 567 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RBM39-238	ENST00000493853	ADGRG1	Q9Y653	693 aa		10.4	□□□□□ -0.74
RBM39-238	ENST00000493853	CGNL1	Q0VF96	1302 aa		10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	HSP90AB2P	Q58FF8	381 aa		10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	SLC27A3	Q5K4L6	730 aa		10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	USHBP1	Q8N6Y0	703 aa		10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	PDGFD	Q9GZP0	370 aa	Predicted RBP	10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	MTFR1L	Q9H019	292 aa		10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	RTL1	A6NKG5	1358 aa		10.39	□□□□□ -0.75
RBM39-238	ENST00000493853	PEAK1	Q9H792	1746 aa		10.38	□□□□□ -0.75
RBM39-238	ENST00000493853	GNPAT	O15228	680 aa		10.38	□□□□□ -0.75
RBM39-238	ENST00000493853	EIF4G2	P78344	907 aa	Known RBP eCLIP	10.38	□□□□□ -0.75
RBM39-238	ENST00000493853	GPIHBP1	Q8IV16	184 aa		10.38	□□□□□ -0.75
RBM39-238	ENST00000493853	CARD14	Q9BXL6	1004 aa		10.38	□□□□□ -0.75
RBM39-238	ENST00000493853	RREB1	Q92766	1687 aa		10.38	□□□□□ -0.75
RBM39-238	ENST00000493853	YY1	P25490	414 aa		10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	HMGB2	P26583	209 aa	Known RBP	10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	SLF2	Q8IX21	1173 aa		10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	LRRC4B	Q9NT99	713 aa		10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	TFCP2L1	Q9NZI6	479 aa		10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	FLT4	P35916	1363 aa		10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	RGPD5	Q99666	1765 aa		10.37	□□□□□ -0.75
RBM39-238	ENST00000493853	NUP188	Q5SRE5	1749 aa		10.36	□□□□□ -0.75
RBM39-238	ENST00000493853	NSD3	Q9BZ95	1437 aa		10.36	□□□□□ -0.75
RBM39-238	ENST00000493853	DNAJB2	P25686	324 aa		10.36	□□□□□ -0.75
RBM39-238	ENST00000493853	EMILIN1	Q9Y6C2	1016 aa		10.36	□□□□□ -0.75
RBM39-238	ENST00000493853	INSR	P06213	1382 aa		10.36	□□□□□ -0.75
RBM39-238	ENST00000493853	USP54	Q70EL1	1684 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	RCCD1	A6NED2	376 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	OAT	P04181	439 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	TNNT2	P45379	298 aa	Predicted RBP	10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	KCNQ4	P56696	695 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	ZNF827	Q17R98	1081 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	SLC16A10	Q8TF71	515 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	NECTIN2	Q92692	538 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	CCNL1	Q9UK58	526 aa	Predicted RBP	10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	KIF24	Q5T7B8	1368 aa		10.35	□□□□□ -0.75
RBM39-238	ENST00000493853	PCDH11X	Q9BZA7	1347 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	PCDH11Y	Q9BZA8	1340 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	HSPA5	P11021	654 aa	Known RBP	10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	FECH	P22830	423 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	POLD1	P28340	1107 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	IFFO2	Q5TF58	517 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	ARX	Q96QS3	562 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	SYT17	Q9BSW7	474 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	FHDC1	Q9C0D6	1143 aa	Predicted RBP	10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	SPG7	Q9UQ90	795 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	LTN1	O94822	1766 aa		10.34	□□□□□ -0.75
RBM39-238	ENST00000493853	GPR37	O15354	613 aa		10.33	□□□□□ -0.76
RBM39-238	ENST00000493853	ITGBL1	O95965	494 aa	Predicted RBP	10.33	□□□□□ -0.76
RBM39-238	ENST00000493853	KCNC4	Q03721	635 aa		10.33	□□□□□ -0.76
RBM39-238	ENST00000493853	MPRIP	Q6WCQ1	1025 aa		10.33	□□□□□ -0.76
RBM39-238	ENST00000493853	RGPD3	A6NKT7	1758 aa	Predicted RBP	10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	RGPD4	Q7Z3J3	1758 aa		10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	TMEM134	Q9H6X4	195 aa		10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	PANK3	Q9H999	370 aa		10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	SBF2	Q86WG5	1849 aa		10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	MEGF6	O75095	1541 aa		10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	WASHC2A	Q641Q2	1341 aa		10.32	□□□□□ -0.76
RBM39-238	ENST00000493853	WNK3	Q9BYP7	1800 aa		10.31	□□□□□ -0.76
RBM39-238	ENST00000493853	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	10.31	□□□□□ -0.76
RBM39-238	ENST00000493853	PXYLP1	Q8TE99	480 aa		10.31	□□□□□ -0.76
RBM39-238	ENST00000493853	SMARCC1	Q92922	1105 aa	Predicted RBP	10.31	□□□□□ -0.76
RBM39-238	ENST00000493853	POLK	Q9UBT6	870 aa		10.31	□□□□□ -0.76
RBM39-238	ENST00000493853	NHS	Q6T4R5	1651 aa		10.31	□□□□□ -0.76
RBM39-238	ENST00000493853	CYP27B1	O15528	508 aa		10.3	□□□□□ -0.76
RBM39-238	ENST00000493853	APLP1	P51693	650 aa		10.3	□□□□□ -0.76
RBM39-238	ENST00000493853	GPR162	Q16538	588 aa		10.3	□□□□□ -0.76
RBM39-238	ENST00000493853	MORC1	Q86VD1	984 aa		10.3	□□□□□ -0.76
RBM39-238	ENST00000493853	KNSTRN	Q9Y448	316 aa		10.3	□□□□□ -0.76
RBM39-238	ENST00000493853	PNPLA7	Q6ZV29	1317 aa		10.3	□□□□□ -0.76
RBM39-238	ENST00000493853	METTL3	Q86U44	580 aa	Known RBP	10.29	□□□□□ -0.76
RBM39-238	ENST00000493853	IFNL2	Q8IZJ0	200 aa		10.29	□□□□□ -0.76
RBM39-238	ENST00000493853	FLAD1	Q8NFF5	587 aa		10.29	□□□□□ -0.76
RBM39-238	ENST00000493853	FAM208A	Q9UK61	1670 aa	Known RBP	10.28	□□□□□ -0.76
RBM39-238	ENST00000493853	TMOD3	Q9NYL9	352 aa		10.28	□□□□□ -0.76
RBM39-238	ENST00000493853	NSD2	O96028	1365 aa		10.27	□□□□□ -0.76
RBM39-238	ENST00000493853	PALLD	Q8WX93	1383 aa		10.27	□□□□□ -0.76
RBM39-238	ENST00000493853	EIF4A2	Q14240	407 aa	Known RBP	10.27	□□□□□ -0.77
RBM39-238	ENST00000493853	COL23A1	Q86Y22	540 aa	Predicted RBP	10.27	□□□□□ -0.77
RBM39-238	ENST00000493853	PIGB	Q92521	554 aa		10.27	□□□□□ -0.77
RBM39-238	ENST00000493853	AK7	Q96M32	723 aa		10.27	□□□□□ -0.77
RBM39-238	ENST00000493853	PLEKHO1	Q53GL0	409 aa	Predicted RBP	10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	MSL1	Q68DK7	614 aa		10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	MTR	Q99707	1265 aa		10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	PRR14	Q9BWN1	585 aa		10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	IL21	Q9HBE4	155 aa		10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	BTAF1	O14981	1849 aa		10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	KAT6B	Q8WYB5	2073 aa		10.26	□□□□□ -0.77
RBM39-238	ENST00000493853	CASZ1	Q86V15	1759 aa		10.25	□□□□□ -0.77
RBM39-238	ENST00000493853	HSP90AB1	P08238	724 aa	Known RBP	10.25	□□□□□ -0.77
RBM39-238	ENST00000493853	PHKG2	P15735	406 aa		10.25	□□□□□ -0.77
RBM39-238	ENST00000493853	TJAP1	Q5JTD0	557 aa		10.25	□□□□□ -0.77
RBM39-238	ENST00000493853	LOC102724428	A0A0B4J2F2	783 aa		10.24	□□□□□ -0.77
RBM39-238	ENST00000493853	ATP6V1A	P38606	617 aa		10.24	□□□□□ -0.77
RBM39-238	ENST00000493853	SIK1	P57059	783 aa		10.24	□□□□□ -0.77
RBM39-238	ENST00000493853	AMOT	Q4VCS5	1084 aa		10.24	□□□□□ -0.77
RBM39-238	ENST00000493853	DHX30	Q7L2E3	1194 aa	Known RBP eCLIP	10.24	□□□□□ -0.77
RBM39-238	ENST00000493853	MAP3K5	Q99683	1374 aa		10.24	□□□□□ -0.77
RBM39-238	ENST00000493853	ERVV-2	B6SEH9	535 aa		10.23	□□□□□ -0.77
RBM39-238	ENST00000493853	CABP4	P57796	275 aa		10.23	□□□□□ -0.77

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