RNA–Protein interactions for RNA: ENST00000493456.5

NUP50-218, Transcript of nucleoporin 50, humanhuman

TSL 3

Gene NUP50, Length 478 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-218ENST00000493456 MASTLQ96GX5 879 aa23.8■■□□□ 1.4
NUP50-218ENST00000493456 CEMIPQ8WUJ3 1361 aa23.79■■□□□ 1.4
NUP50-218ENST00000493456 IQCA1LA6NCM1 817 aa23.79■■□□□ 1.4
NUP50-218ENST00000493456 SLX4Q8IY92 1834 aa23.78■■□□□ 1.4
NUP50-218ENST00000493456 U2SURPO15042 1029 aaKnown RBP23.78■■□□□ 1.4
NUP50-218ENST00000493456 DDNO94850 711 aaPredicted RBP23.78■■□□□ 1.4
NUP50-218ENST00000493456 A1BGP04217 495 aa23.78■■□□□ 1.4
NUP50-218ENST00000493456 NPC1L1Q9UHC9 1359 aa23.78■■□□□ 1.4
NUP50-218ENST00000493456 DZIP3Q86Y13 1208 aaKnown RBP23.77■■□□□ 1.4
NUP50-218ENST00000493456 CACNA1SQ13698 1873 aa23.77■■□□□ 1.4
NUP50-218ENST00000493456 LDHDQ86WU2 507 aa23.76■■□□□ 1.39
NUP50-218ENST00000493456 L3MBTL3Q96JM7 780 aaPredicted RBP23.76■■□□□ 1.39
NUP50-218ENST00000493456 MKRN1Q9UHC7 482 aaKnown RBP23.76■■□□□ 1.39
NUP50-218ENST00000493456 POTEIP0CG38 1075 aa23.75■■□□□ 1.39
NUP50-218ENST00000493456 POTEJP0CG39 1038 aa23.75■■□□□ 1.39
NUP50-218ENST00000493456 CLEC4GQ6UXB4 293 aa23.75■■□□□ 1.39
NUP50-218ENST00000493456 CNTNAP1P78357 1384 aa23.75■■□□□ 1.39
NUP50-218ENST00000493456 SCN4AP35499 1836 aa23.75■■□□□ 1.39
NUP50-218ENST00000493456 BTBD11A6QL63 1104 aa23.74■■□□□ 1.39
NUP50-218ENST00000493456 CCDC93Q567U6 631 aa23.74■■□□□ 1.39
NUP50-218ENST00000493456 ZNF652Q9Y2D9 606 aa23.74■■□□□ 1.39
NUP50-218ENST00000493456 NBPF5PQ86XG9 351 aaPredicted RBP23.73■■□□□ 1.39
NUP50-218ENST00000493456 PASKQ96RG2 1323 aa23.73■■□□□ 1.39
NUP50-218ENST00000493456 RGL2O15211 777 aa23.71■■□□□ 1.39
NUP50-218ENST00000493456 NPR1P16066 1061 aa23.71■■□□□ 1.39
NUP50-218ENST00000493456 C7orf43Q8WVR3 580 aa23.71■■□□□ 1.39
NUP50-218ENST00000493456 TAF1DQ9H5J8 278 aaPredicted RBP23.71■■□□□ 1.39
NUP50-218ENST00000493456 KCNQ3O43525 872 aa23.7■■□□□ 1.38
NUP50-218ENST00000493456 FKBP4Q02790 459 aaKnown RBP eCLIP23.7■■□□□ 1.38
NUP50-218ENST00000493456 CCER1Q8TC90 406 aaPredicted RBP23.7■■□□□ 1.38
NUP50-218ENST00000493456 KLRG2A4D1S0 409 aaPredicted RBP23.69■■□□□ 1.38
NUP50-218ENST00000493456 USP16Q9Y5T5 823 aa23.69■■□□□ 1.38
NUP50-218ENST00000493456 PRDM10Q9NQV6 1147 aa23.68■■□□□ 1.38
NUP50-218ENST00000493456 TMEM88BA6NKF7 163 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 FOXN1O15353 648 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 SNRPA1P09661 255 aaKnown RBP23.67■■□□□ 1.38
NUP50-218ENST00000493456 PRKAR2BP31323 418 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 TPTE2Q6XPS3 522 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 RTKN2Q8IZC4 609 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 PHACTR3Q96KR7 559 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 RSPH6AQ9H0K4 717 aa23.67■■□□□ 1.38
NUP50-218ENST00000493456 PIP4K2AP48426 406 aaPredicted RBP23.66■■□□□ 1.38
NUP50-218ENST00000493456 AIDAQ96BJ3 306 aa23.66■■□□□ 1.38
NUP50-218ENST00000493456 CFAP53Q96M91 514 aa23.66■■□□□ 1.38
NUP50-218ENST00000493456 ZNF541Q9H0D2 1346 aa23.65■■□□□ 1.38
NUP50-218ENST00000493456 ZNF277Q9NRM2 450 aaPredicted RBP23.65■■□□□ 1.38
NUP50-218ENST00000493456 HACL1Q9UJ83 578 aa23.65■■□□□ 1.38
NUP50-218ENST00000493456 ADAMTSL1Q8N6G6 1762 aa23.65■■□□□ 1.38
NUP50-218ENST00000493456 PRAMEF22A3QJZ6 481 aa23.64■■□□□ 1.37
NUP50-218ENST00000493456 ITGBL1O95965 494 aaPredicted RBP23.64■■□□□ 1.37
NUP50-218ENST00000493456 CTCFP49711 727 aaPredicted RBP23.64■■□□□ 1.37
NUP50-218ENST00000493456 EAPPQ56P03 285 aaPredicted RBP23.64■■□□□ 1.37
NUP50-218ENST00000493456 RTF1Q92541 710 aaKnown RBP23.64■■□□□ 1.37
NUP50-218ENST00000493456 NIP7Q9Y221 180 aaKnown RBP eCLIP23.64■■□□□ 1.37
NUP50-218ENST00000493456 ALDH1B1P30837 517 aa23.63■■□□□ 1.37
NUP50-218ENST00000493456 VEGFBP49765 207 aa23.63■■□□□ 1.37
NUP50-218ENST00000493456 PNMA8AQ86V59 439 aaPredicted RBP23.63■■□□□ 1.37
NUP50-218ENST00000493456 EPHX2P34913 555 aa23.62■■□□□ 1.37
NUP50-218ENST00000493456 CNGB1Q14028 1251 aaPredicted RBP23.62■■□□□ 1.37
NUP50-218ENST00000493456 NUDCQ9Y266 331 aa23.62■■□□□ 1.37
NUP50-218ENST00000493456 FZD9O00144 591 aa23.61■■□□□ 1.37
NUP50-218ENST00000493456 IARSP41252 1262 aaKnown RBP23.61■■□□□ 1.37
NUP50-218ENST00000493456 CLEC11AQ9Y240 323 aa23.61■■□□□ 1.37
NUP50-218ENST00000493456 NBPF26B4DH59 902 aa23.59■■□□□ 1.37
NUP50-218ENST00000493456 NBPF10Q6P3W6 841 aaKnown RBP23.59■■□□□ 1.37
NUP50-218ENST00000493456 MCM10Q7L590 875 aa23.59■■□□□ 1.37
NUP50-218ENST00000493456 GPC2Q8N158 579 aa23.59■■□□□ 1.37
NUP50-218ENST00000493456 NBPF15Q8N660 670 aa23.59■■□□□ 1.37
NUP50-218ENST00000493456 PSMD1Q99460 953 aa23.59■■□□□ 1.37
NUP50-218ENST00000493456 RNF123Q5XPI4 1314 aa23.59■■□□□ 1.37
NUP50-218ENST00000493456 RASSF10A6NK89 507 aa23.58■■□□□ 1.37
NUP50-218ENST00000493456 HTATSF1O43719 755 aaKnown RBP23.58■■□□□ 1.37
NUP50-218ENST00000493456 OLFM4Q6UX06 510 aa23.58■■□□□ 1.37
NUP50-218ENST00000493456 WBP1LQ9NX94 342 aa23.58■■□□□ 1.37
NUP50-218ENST00000493456 SNED1Q8TER0 1413 aa23.58■■□□□ 1.36
NUP50-218ENST00000493456 LAMB4A4D0S4 1761 aa23.57■■□□□ 1.36
NUP50-218ENST00000493456 GTF2E1P29083 439 aaPredicted RBP23.57■■□□□ 1.36
NUP50-218ENST00000493456 CNTROBQ8N137 903 aa23.57■■□□□ 1.36
NUP50-218ENST00000493456 SYNE4Q8N205 404 aa23.57■■□□□ 1.36
NUP50-218ENST00000493456 FAM177BA6PVY3 158 aa23.56■■□□□ 1.36
NUP50-218ENST00000493456 U2AF1L5P0DN76 240 aaPredicted RBP23.56■■□□□ 1.36
NUP50-218ENST00000493456 U2AF1Q01081 240 aaKnown RBP eCLIP23.56■■□□□ 1.36
NUP50-218ENST00000493456 CRY2Q49AN0 593 aa23.56■■□□□ 1.36
NUP50-218ENST00000493456 JDP2Q8WYK2 163 aa23.56■■□□□ 1.36
NUP50-218ENST00000493456 NYXQ9GZU5 481 aa23.56■■□□□ 1.36
NUP50-218ENST00000493456 HLFQ16534 295 aa23.55■■□□□ 1.36
NUP50-218ENST00000493456 DEFB115Q30KQ5 88 aa23.55■■□□□ 1.36
NUP50-218ENST00000493456 CC2D2BQ6DHV5 1058 aa23.55■■□□□ 1.36
NUP50-218ENST00000493456 MAP1SQ66K74 1059 aaPredicted RBP23.54■■□□□ 1.36
NUP50-218ENST00000493456 RIC1Q4ADV7 1423 aa23.53■■□□□ 1.36
NUP50-218ENST00000493456 GRIPAP1Q4V328 841 aa23.53■■□□□ 1.36
NUP50-218ENST00000493456 ABCC12Q96J65 1359 aa23.52■■□□□ 1.36
NUP50-218ENST00000493456 ERVV-1B6SEH8 477 aa23.52■■□□□ 1.36
NUP50-218ENST00000493456 LBX1P52954 281 aa23.52■■□□□ 1.36
NUP50-218ENST00000493456 EIF6P56537 245 aaKnown RBP23.52■■□□□ 1.36
NUP50-218ENST00000493456 MAP2K1Q02750 393 aaPredicted RBP23.52■■□□□ 1.36
NUP50-218ENST00000493456 DCTN1Q14203 1278 aa23.52■■□□□ 1.36
NUP50-218ENST00000493456 TAF7Q15545 349 aaPredicted RBP23.52■■□□□ 1.36
NUP50-218ENST00000493456 IBTKQ9P2D0 1353 aaPredicted RBP23.52■■□□□ 1.36
NUP50-218ENST00000493456 LMOD1P29536 600 aaPredicted RBP23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 133.7 ms