RNA–Protein interactions for RNA: ENST00000489573.5

SMC4-221, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 1 (best)

Gene SMC4, Length 1,553 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-221ENST00000489573 USP44Q9H0E7 712 aa27.18■■□□□ 1.94
SMC4-221ENST00000489573 ZBTB1Q9Y2K1 713 aa27.18■■□□□ 1.94
SMC4-221ENST00000489573 IBTKQ9P2D0 1353 aaPredicted RBP27.17■■□□□ 1.94
SMC4-221ENST00000489573 GNAI2P04899 355 aa27.17■■□□□ 1.94
SMC4-221ENST00000489573 MYD88Q99836 296 aa27.17■■□□□ 1.94
SMC4-221ENST00000489573 BCL11BQ9C0K0 894 aaPredicted RBP27.17■■□□□ 1.94
SMC4-221ENST00000489573 RREB1Q92766 1687 aa27.16■■□□□ 1.94
SMC4-221ENST00000489573 UBTFL1P0CB47 393 aaPredicted RBP27.16■■□□□ 1.94
SMC4-221ENST00000489573 ZNF330Q9Y3S2 320 aaPredicted RBP27.16■■□□□ 1.94
SMC4-221ENST00000489573 NUP188Q5SRE5 1749 aa27.16■■□□□ 1.94
SMC4-221ENST00000489573 CWF19L2Q2TBE0 894 aaKnown RBP27.15■■□□□ 1.94
SMC4-221ENST00000489573 RPAP2Q8IXW5 612 aaPredicted RBP27.15■■□□□ 1.94
SMC4-221ENST00000489573 CCDC87Q9NVE4 849 aa27.15■■□□□ 1.94
SMC4-221ENST00000489573 IGKV5-2P06315 115 aa27.14■■□□□ 1.94
SMC4-221ENST00000489573 IL6STP40189 918 aaPredicted RBP27.14■■□□□ 1.94
SMC4-221ENST00000489573 CRKLP46109 303 aaKnown RBP27.14■■□□□ 1.94
SMC4-221ENST00000489573 CEP85Q6P2H3 762 aa27.14■■□□□ 1.94
SMC4-221ENST00000489573 ANKRD44Q8N8A2 993 aa27.14■■□□□ 1.94
SMC4-221ENST00000489573 COL5A3P25940 1745 aaPredicted RBP27.14■■□□□ 1.94
SMC4-221ENST00000489573 INTS5Q6P9B9 1019 aaKnown RBP27.14■■□□□ 1.93
SMC4-221ENST00000489573 KIF6Q6ZMV9 814 aa27.14■■□□□ 1.93
SMC4-221ENST00000489573 SIRT2Q8IXJ6 389 aa27.14■■□□□ 1.93
SMC4-221ENST00000489573 NEURL1BA8MQ27 555 aa27.13■■□□□ 1.93
SMC4-221ENST00000489573 ZBTB3Q9H5J0 574 aa27.12■■□□□ 1.93
SMC4-221ENST00000489573 C9orf78Q9NZ63 289 aaPredicted RBP27.11■■□□□ 1.93
SMC4-221ENST00000489573 LRRFIP2Q9Y608 721 aaKnown RBP27.11■■□□□ 1.93
SMC4-221ENST00000489573 LY75O60449 1722 aa27.11■■□□□ 1.93
SMC4-221ENST00000489573 NBPF7P0C2Y1 421 aaPredicted RBP27.1■■□□□ 1.93
SMC4-221ENST00000489573 NPM2Q86SE8 214 aaKnown RBP27.1■■□□□ 1.93
SMC4-221ENST00000489573 GRM8O00222 908 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 SMC5Q8IY18 1101 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 LINC00116Q8NCU8 138 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 UTYO14607 1347 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 MAP3K15Q6ZN16 1313 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 EIF5P55010 431 aaKnown RBP27.09■■□□□ 1.93
SMC4-221ENST00000489573 GCKRQ14397 625 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 CCNL1Q9UK58 526 aaPredicted RBP27.09■■□□□ 1.93
SMC4-221ENST00000489573 HDAC5Q9UQL6 1122 aa27.09■■□□□ 1.93
SMC4-221ENST00000489573 CNTNAP4Q9C0A0 1308 aa27.08■■□□□ 1.93
SMC4-221ENST00000489573 HMMRO75330 724 aa27.07■■□□□ 1.92
SMC4-221ENST00000489573 ATP5J2-PTCD1G3V325 749 aa27.06■■□□□ 1.92
SMC4-221ENST00000489573 TRIM37O94972 964 aa27.06■■□□□ 1.92
SMC4-221ENST00000489573 GCC1Q96CN9 775 aa27.06■■□□□ 1.92
SMC4-221ENST00000489573 ARXQ96QS3 562 aa27.06■■□□□ 1.92
SMC4-221ENST00000489573 AFDNP55196 1824 aaKnown RBP27.06■■□□□ 1.92
SMC4-221ENST00000489573 KCNQ4P56696 695 aa27.05■■□□□ 1.92
SMC4-221ENST00000489573 MYH14Q7Z406 1995 aaKnown RBP27.05■■□□□ 1.92
SMC4-221ENST00000489573 DZIP3Q86Y13 1208 aaKnown RBP27.05■■□□□ 1.92
SMC4-221ENST00000489573 ATP8B2P98198 1209 aa27.04■■□□□ 1.92
SMC4-221ENST00000489573 TCIRG1Q13488 830 aa27.04■■□□□ 1.92
SMC4-221ENST00000489573 PDZRN3Q9UPQ7 1066 aa27.04■■□□□ 1.92
SMC4-221ENST00000489573 ERVV-1B6SEH8 477 aa27.03■■□□□ 1.92
SMC4-221ENST00000489573 RC3H1Q5TC82 1133 aaKnown RBP27.03■■□□□ 1.92
SMC4-221ENST00000489573 GIGYF2Q6Y7W6 1299 aaKnown RBP27.03■■□□□ 1.92
SMC4-221ENST00000489573 SKAP1Q86WV1 359 aa27.02■■□□□ 1.92
SMC4-221ENST00000489573 CCDC191Q8NCU4 936 aa27.02■■□□□ 1.92
SMC4-221ENST00000489573 ISCA1Q9BUE6 129 aa27.02■■□□□ 1.92
SMC4-221ENST00000489573 CWC25Q9NXE8 425 aaPredicted RBP27.02■■□□□ 1.92
SMC4-221ENST00000489573 COL15A1P39059 1388 aa27.02■■□□□ 1.92
SMC4-221ENST00000489573 HSP90AB3PQ58FF7 597 aa27.01■■□□□ 1.92
SMC4-221ENST00000489573 UPF1Q92900 1129 aaKnown RBP eCLIP27.01■■□□□ 1.921e-11■■■■□ 26.2
SMC4-221ENST00000489573 DCTPP1Q9H773 170 aa27.01■■□□□ 1.92
SMC4-221ENST00000489573 TBC1D2BQ9UPU7 963 aa27.01■■□□□ 1.92
SMC4-221ENST00000489573 SUCLG2Q96I99 432 aa27.01■■□□□ 1.91
SMC4-221ENST00000489573 A0A087WZG4 1122 aa27■■□□□ 1.91
SMC4-221ENST00000489573 TRIM28Q13263 835 aaKnown RBP27■■□□□ 1.91
SMC4-221ENST00000489573 HLFQ16534 295 aa27■■□□□ 1.91
SMC4-221ENST00000489573 PNMA6EA0A0J9YXQ4 647 aa26.99■■□□□ 1.91
SMC4-221ENST00000489573 TAF1LQ8IZX4 1826 aa26.99■■□□□ 1.91
SMC4-221ENST00000489573 NUCB1Q02818 461 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 MTX1Q13505 466 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 UBE3BQ7Z3V4 1068 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 PPP1R42Q7Z4L9 355 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 ANKRD36CQ5JPF3 1778 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 POLA2Q14181 598 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 SLC27A3Q5K4L6 730 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 SSH3Q8TE77 659 aa26.97■■□□□ 1.91
SMC4-221ENST00000489573 H7C1W4 665 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 RPS6KA4O75676 772 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 CAMTA2O94983 1202 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 RGS3P49796 1198 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 CASP7P55210 303 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 KAZALD1Q96I82 304 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 C4BP0C0L5 1744 aa26.96■■□□□ 1.91
SMC4-221ENST00000489573 SRGAP3O43295 1099 aa26.95■■□□□ 1.9
SMC4-221ENST00000489573 BICC1Q9H694 974 aaKnown RBP26.95■■□□□ 1.9
SMC4-221ENST00000489573 LRRC4BQ9NT99 713 aa26.94■■□□□ 1.9
SMC4-221ENST00000489573 NUP98P52948 1817 aa26.94■■□□□ 1.9
SMC4-221ENST00000489573 GNPATO15228 680 aa26.93■■□□□ 1.9
SMC4-221ENST00000489573 ANKRD45Q5TZF3 282 aa26.93■■□□□ 1.9
SMC4-221ENST00000489573 CHD1LQ86WJ1 897 aa26.93■■□□□ 1.9
SMC4-221ENST00000489573 JARID2Q92833 1246 aaPredicted RBP26.93■■□□□ 1.9
SMC4-221ENST00000489573 BCORQ6W2J9 1755 aa26.93■■□□□ 1.9
SMC4-221ENST00000489573 GPTP24298 496 aa26.92■■□□□ 1.9
SMC4-221ENST00000489573 NLRP10Q86W26 655 aa26.92■■□□□ 1.9
SMC4-221ENST00000489573 RTCBQ9Y3I0 505 aaKnown RBP26.92■■□□□ 1.9
SMC4-221ENST00000489573 ZNF34Q8IZ26 560 aa26.91■■□□□ 1.9
SMC4-221ENST00000489573 AK7Q96M32 723 aa26.91■■□□□ 1.9
SMC4-221ENST00000489573 ZNF652Q9Y2D9 606 aa26.91■■□□□ 1.9
SMC4-221ENST00000489573 PLSCR1O15162 318 aa26.9■■□□□ 1.9
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms