RNA–Protein interactions for RNA: ENST00000485247.1

PTPN4-210, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 590 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-210ENST00000485247 TRIM32Q13049 653 aa8.09□□□□□ -1.11
PTPN4-210ENST00000485247 SAFB2Q14151 953 aaKnown RBP eCLIP8.09□□□□□ -1.11
PTPN4-210ENST00000485247 ARXQ96QS3 562 aa8.09□□□□□ -1.11
PTPN4-210ENST00000485247 MTFR1LQ9H019 292 aa8.09□□□□□ -1.11
PTPN4-210ENST00000485247 GPRASP1Q5JY77 1395 aa8.09□□□□□ -1.12
PTPN4-210ENST00000485247 SPTLC1O15269 473 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 GJA5P36382 358 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 ZC3H6P61129 1189 aaKnown RBP8.08□□□□□ -1.12
PTPN4-210ENST00000485247 FOXC1Q12948 553 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 MTMR2Q13614 643 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 MYSM1Q5VVJ2 828 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 LARP1Q6PKG0 1096 aaKnown RBP8.08□□□□□ -1.12
PTPN4-210ENST00000485247 PTF1AQ7RTS3 328 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 CCDC24Q8N4L8 307 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 TCP11L2Q8N4U5 519 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 STK32BQ9NY57 414 aa8.08□□□□□ -1.12
PTPN4-210ENST00000485247 PPLO60437 1756 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 IFT172Q9UG01 1749 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 ZBTB24O43167 697 aaPredicted RBP8.07□□□□□ -1.12
PTPN4-210ENST00000485247 CD2BP2O95400 341 aaKnown RBP8.07□□□□□ -1.12
PTPN4-210ENST00000485247 HSPA6P17066 643 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 DIXDC1Q155Q3 683 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 TRAF7Q6Q0C0 670 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 PRR7Q8TB68 274 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 GPBP1L1Q9HC44 474 aaPredicted RBP8.07□□□□□ -1.12
PTPN4-210ENST00000485247 LIMD1Q9UGP4 676 aa8.07□□□□□ -1.12
PTPN4-210ENST00000485247 TRPM3Q9HCF6 1732 aaPredicted RBP8.06□□□□□ -1.12
PTPN4-210ENST00000485247 ACIN1Q9UKV3 1341 aaKnown RBP8.06□□□□□ -1.12
PTPN4-210ENST00000485247 SSH2Q76I76 1423 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 YTHDC2Q9H6S0 1430 aaKnown RBP8.06□□□□□ -1.12
PTPN4-210ENST00000485247 ALS2Q96Q42 1657 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 SLC15A2Q16348 729 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 RGL3Q3MIN7 710 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 PTCRAQ6ISU1 281 aaPredicted RBP8.06□□□□□ -1.12
PTPN4-210ENST00000485247 RIC3Q7Z5B4 369 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 NUDT12Q9BQG2 462 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 SHANK3Q9BYB0 1731 aa8.06□□□□□ -1.12
PTPN4-210ENST00000485247 OVOS2A0A0G2JMS6 1433 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 OVOS2A0A0J9YW53 1432 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 OVOS2Q6IE36 1432 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 C11orf95C9JLR9 678 aaPredicted RBP8.05□□□□□ -1.12
PTPN4-210ENST00000485247 CFAP99D6REC4 459 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 TXNRD1Q16881 649 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 NUTM2GQ5VZR2 741 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 SIRT1Q96EB6 747 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 PRAM1Q96QH2 718 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 KNDC1Q76NI1 1749 aa8.05□□□□□ -1.12
PTPN4-210ENST00000485247 SKOR1P84550 965 aa8.04□□□□□ -1.12
PTPN4-210ENST00000485247 CSPP1Q1MSJ5 1256 aa8.04□□□□□ -1.12
PTPN4-210ENST00000485247 NGDNQ8NEJ9 315 aaKnown RBP8.04□□□□□ -1.12
PTPN4-210ENST00000485247 TOR4AQ9NXH8 423 aa8.04□□□□□ -1.12
PTPN4-210ENST00000485247 THRAP3Q9Y2W1 955 aaKnown RBP8.04□□□□□ -1.12
PTPN4-210ENST00000485247 MAP3K5Q99683 1374 aa8.04□□□□□ -1.12
PTPN4-210ENST00000485247 RGPD3A6NKT7 1758 aaPredicted RBP8.04□□□□□ -1.12
PTPN4-210ENST00000485247 RGPD4Q7Z3J3 1758 aa8.04□□□□□ -1.12
PTPN4-210ENST00000485247 CRYBG1Q9Y4K1 1723 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 FAM187AA6NFU0 413 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 SPDYE5A6NIY4 337 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 CCNYL3P0C7X3 344 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 QPCTQ16769 361 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 PTPRNQ16849 979 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 HIRIP3Q9BW71 556 aaPredicted RBP8.03□□□□□ -1.12
PTPN4-210ENST00000485247 KDM4CQ9H3R0 1056 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 ZBTB3Q9H5J0 574 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 POGKQ9P215 609 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 ANKARQ7Z5J8 1434 aa8.03□□□□□ -1.12
PTPN4-210ENST00000485247 WNT7AO00755 349 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 DGAT1O75907 488 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 DDB1Q16531 1140 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 PKDCCQ504Y2 493 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 PRPF38BQ5VTL8 546 aaKnown RBP8.02□□□□□ -1.13
PTPN4-210ENST00000485247 DESI1Q6ICB0 168 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 ZNF526Q8TF50 670 aaPredicted RBP8.02□□□□□ -1.13
PTPN4-210ENST00000485247 ATP10DQ9P241 1426 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 PRR36Q9H6K5 1346 aa8.02□□□□□ -1.13
PTPN4-210ENST00000485247 PEAK1Q9H792 1746 aa8.01□□□□□ -1.13
PTPN4-210ENST00000485247 DHX57Q6P158 1386 aaKnown RBP8.01□□□□□ -1.13
PTPN4-210ENST00000485247 ANKRD30BQ9BXX2 1392 aa8.01□□□□□ -1.13
PTPN4-210ENST00000485247 TUSC1Q2TAM9 212 aa8.01□□□□□ -1.13
PTPN4-210ENST00000485247 COL13A1Q5TAT6 717 aaPredicted RBP8.01□□□□□ -1.13
PTPN4-210ENST00000485247 NLGN2Q8NFZ4 835 aa8.01□□□□□ -1.13
PTPN4-210ENST00000485247 PIK3C2GO75747 1445 aa8.01□□□□□ -1.13
PTPN4-210ENST00000485247 SBF2Q86WG5 1849 aa8.01□□□□□ -1.13
PTPN4-210ENST00000485247 PARP4Q9UKK3 1724 aaKnown RBP8□□□□□ -1.13
PTPN4-210ENST00000485247 LILRB3O75022 631 aa8□□□□□ -1.13
PTPN4-210ENST00000485247 YBX3P16989 372 aaKnown RBP eCLIP8□□□□□ -1.13
PTPN4-210ENST00000485247 CLK2P49760 499 aaKnown RBP8□□□□□ -1.13
PTPN4-210ENST00000485247 CFAP70Q5T0N1 1121 aa8□□□□□ -1.13
PTPN4-210ENST00000485247 MARCH10Q8NA82 808 aaPredicted RBP8□□□□□ -1.13
PTPN4-210ENST00000485247 MRGPRX2Q96LB1 330 aa8□□□□□ -1.13
PTPN4-210ENST00000485247 FAM117AQ9C073 453 aa8□□□□□ -1.13
PTPN4-210ENST00000485247 EVA1BQ9NVM1 165 aa8□□□□□ -1.13
PTPN4-210ENST00000485247 PLEKHG3A1L390 1219 aa7.99□□□□□ -1.13
PTPN4-210ENST00000485247 GRIN3BO60391 1043 aa7.99□□□□□ -1.13
PTPN4-210ENST00000485247 POLD1P28340 1107 aa7.99□□□□□ -1.13
PTPN4-210ENST00000485247 WNT7BP56706 349 aa7.99□□□□□ -1.13
PTPN4-210ENST00000485247 LYPD8Q6UX82 237 aa7.99□□□□□ -1.13
PTPN4-210ENST00000485247 UNC93B1Q9H1C4 597 aa7.99□□□□□ -1.13
PTPN4-210ENST00000485247 C14orf93Q9H972 538 aaKnown RBP7.99□□□□□ -1.13
PTPN4-210ENST00000485247 POLR3EQ9NVU0 708 aa7.99□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 67.5 ms