RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 TSR2Q969E8 191 aaKnown RBP20.58■□□□□ 0.89
UPF3A-208ENST00000484246 ATP10DQ9P241 1426 aa20.58■□□□□ 0.88
UPF3A-208ENST00000484246 CARMIL3Q8ND23 1372 aa20.58■□□□□ 0.88
UPF3A-208ENST00000484246 TBC1D9BQ66K14 1250 aa20.57■□□□□ 0.88
UPF3A-208ENST00000484246 NRXN2Q9P2S2 1712 aa20.57■□□□□ 0.88
UPF3A-208ENST00000484246 DBF4Q9UBU7 674 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-208ENST00000484246 SALL2Q9Y467 1007 aaPredicted RBP20.57■□□□□ 0.88
UPF3A-208ENST00000484246 MYL6BP14649 208 aa20.56■□□□□ 0.88
UPF3A-208ENST00000484246 KIF6Q6ZMV9 814 aa20.56■□□□□ 0.88
UPF3A-208ENST00000484246 CHPF2Q9P2E5 772 aa20.56■□□□□ 0.88
UPF3A-208ENST00000484246 TTLL7Q6ZT98 887 aa20.55■□□□□ 0.88
UPF3A-208ENST00000484246 NLGN2Q8NFZ4 835 aa20.55■□□□□ 0.88
UPF3A-208ENST00000484246 MYH16Q9H6N6 1097 aa20.55■□□□□ 0.88
UPF3A-208ENST00000484246 SPINK5Q9NQ38 1064 aaPredicted RBP20.55■□□□□ 0.88
UPF3A-208ENST00000484246 PXDNLA1KZ92 1463 aa20.55■□□□□ 0.88
UPF3A-208ENST00000484246 KIF13BQ9NQT8 1826 aa20.55■□□□□ 0.88
UPF3A-208ENST00000484246 GOLGA2Q08379 1002 aa20.54■□□□□ 0.88
UPF3A-208ENST00000484246 TSPYL6Q8N831 410 aa20.54■□□□□ 0.88
UPF3A-208ENST00000484246 SERPINB2P05120 415 aa20.53■□□□□ 0.88
UPF3A-208ENST00000484246 TGFB2P61812 414 aa20.53■□□□□ 0.88
UPF3A-208ENST00000484246 KLHL34Q8N239 644 aa20.53■□□□□ 0.88
UPF3A-208ENST00000484246 SETDB2Q96T68 719 aa20.53■□□□□ 0.88
UPF3A-208ENST00000484246 HYPKQ9NX55 129 aa20.53■□□□□ 0.88
UPF3A-208ENST00000484246 IBTKQ9P2D0 1353 aaPredicted RBP20.53■□□□□ 0.88
UPF3A-208ENST00000484246 ANXA1P04083 346 aa20.52■□□□□ 0.88
UPF3A-208ENST00000484246 YY1P25490 414 aa20.52■□□□□ 0.88
UPF3A-208ENST00000484246 TWISTNBQ3B726 338 aaPredicted RBP20.52■□□□□ 0.88
UPF3A-208ENST00000484246 CCDC30Q5VVM6 783 aa20.52■□□□□ 0.88
UPF3A-208ENST00000484246 NECTIN2Q92692 538 aa20.52■□□□□ 0.88
UPF3A-208ENST00000484246 HLFQ16534 295 aa20.51■□□□□ 0.87
UPF3A-208ENST00000484246 GIGYF2Q6Y7W6 1299 aaKnown RBP20.51■□□□□ 0.87
UPF3A-208ENST00000484246 COPS6Q7L5N1 327 aa20.51■□□□□ 0.87
UPF3A-208ENST00000484246 XAGE3Q8WTP9 111 aa20.51■□□□□ 0.87
UPF3A-208ENST00000484246 KIAA1551Q9HCM1 1747 aa20.5■□□□□ 0.87
UPF3A-208ENST00000484246 E9PSI1 815 aa20.5■□□□□ 0.87
UPF3A-208ENST00000484246 ELL2O00472 640 aaPredicted RBP20.5■□□□□ 0.87
UPF3A-208ENST00000484246 BICDL1Q6ZP65 573 aa20.49■□□□□ 0.87
UPF3A-208ENST00000484246 ZBTB3Q9H5J0 574 aa20.49■□□□□ 0.87
UPF3A-208ENST00000484246 NIP7Q9Y221 180 aaKnown RBP eCLIP20.49■□□□□ 0.87
UPF3A-208ENST00000484246 PRR5LQ6MZQ0 368 aa20.48■□□□□ 0.87
UPF3A-208ENST00000484246 ZNF34Q8IZ26 560 aa20.48■□□□□ 0.87
UPF3A-208ENST00000484246 VAMP4O75379 141 aa20.47■□□□□ 0.87
UPF3A-208ENST00000484246 EXOSC9Q06265 439 aaKnown RBP20.47■□□□□ 0.87
UPF3A-208ENST00000484246 SLFN5Q08AF3 891 aa20.47■□□□□ 0.87
UPF3A-208ENST00000484246 HSP90AB3PQ58FF7 597 aa20.47■□□□□ 0.87
UPF3A-208ENST00000484246 CNBD1Q8NA66 436 aa20.47■□□□□ 0.87
UPF3A-208ENST00000484246 PLBD2Q8NHP8 589 aa20.47■□□□□ 0.87
UPF3A-208ENST00000484246 PDZRN3Q9UPQ7 1066 aa20.47■□□□□ 0.87
UPF3A-208ENST00000484246 RIC1Q4ADV7 1423 aa20.46■□□□□ 0.87
UPF3A-208ENST00000484246 TRMT2AQ8IZ69 625 aaKnown RBP20.46■□□□□ 0.87
UPF3A-208ENST00000484246 BRIP1Q9BX63 1249 aa20.46■□□□□ 0.87
UPF3A-208ENST00000484246 UBN2Q6ZU65 1347 aa20.46■□□□□ 0.87
UPF3A-208ENST00000484246 PARP10Q53GL7 1025 aa20.45■□□□□ 0.86
UPF3A-208ENST00000484246 NBPF5PQ86XG9 351 aaPredicted RBP20.45■□□□□ 0.86
UPF3A-208ENST00000484246 STK31Q9BXU1 1019 aa20.45■□□□□ 0.86
UPF3A-208ENST00000484246 AFDNP55196 1824 aaKnown RBP20.45■□□□□ 0.86
UPF3A-208ENST00000484246 DCAF8L1A6NGE4 600 aa20.44■□□□□ 0.86
UPF3A-208ENST00000484246 AIMP1Q12904 312 aaKnown RBP20.44■□□□□ 0.86
UPF3A-208ENST00000484246 ANKRD13DQ6ZTN6 518 aa20.44■□□□□ 0.86
UPF3A-208ENST00000484246 NYXQ9GZU5 481 aa20.44■□□□□ 0.86
UPF3A-208ENST00000484246 RNF123Q5XPI4 1314 aa20.44■□□□□ 0.86
UPF3A-208ENST00000484246 DPEP1P16444 411 aa20.43■□□□□ 0.86
UPF3A-208ENST00000484246 KCNA3P22001 575 aa20.43■□□□□ 0.86
UPF3A-208ENST00000484246 ST5P78524 1137 aa20.43■□□□□ 0.86
UPF3A-208ENST00000484246 TCIRG1Q13488 830 aa20.43■□□□□ 0.86
UPF3A-208ENST00000484246 TPTE2Q6XPS3 522 aa20.43■□□□□ 0.86
UPF3A-208ENST00000484246 PHAXQ9H814 394 aaKnown RBP20.42■□□□□ 0.86
UPF3A-208ENST00000484246 A0A0G2JLW4 131 aa20.41■□□□□ 0.86
UPF3A-208ENST00000484246 KLRG2A4D1S0 409 aaPredicted RBP20.41■□□□□ 0.86
UPF3A-208ENST00000484246 NTSR2O95665 410 aa20.41■□□□□ 0.86
UPF3A-208ENST00000484246 YBX3P16989 372 aaKnown RBP eCLIP20.41■□□□□ 0.86
UPF3A-208ENST00000484246 PDE6BP35913 854 aa20.41■□□□□ 0.86
UPF3A-208ENST00000484246 TRIM28Q13263 835 aaKnown RBP20.41■□□□□ 0.86
UPF3A-208ENST00000484246 ISCA1Q9BUE6 129 aa20.41■□□□□ 0.86
UPF3A-208ENST00000484246 DDX58O95786 925 aaKnown RBP20.4■□□□□ 0.86
UPF3A-208ENST00000484246 GPTP24298 496 aa20.4■□□□□ 0.86
UPF3A-208ENST00000484246 NUP98P52948 1817 aa20.4■□□□□ 0.86
UPF3A-208ENST00000484246 NLRP10Q86W26 655 aa20.4■□□□□ 0.86
UPF3A-208ENST00000484246 ZNF428Q96B54 188 aa20.4■□□□□ 0.86
UPF3A-208ENST00000484246 ABCC12Q96J65 1359 aa20.4■□□□□ 0.86
UPF3A-208ENST00000484246 GRIN3BO60391 1043 aa20.39■□□□□ 0.85
UPF3A-208ENST00000484246 GPR162Q16538 588 aa20.39■□□□□ 0.85
UPF3A-208ENST00000484246 SUSD4Q5VX71 490 aa20.39■□□□□ 0.85
UPF3A-208ENST00000484246 PPP1R42Q7Z4L9 355 aa20.39■□□□□ 0.85
UPF3A-208ENST00000484246 CDCA7LQ96GN5 454 aa20.39■□□□□ 0.85
UPF3A-208ENST00000484246 SLC4A2P04920 1241 aa20.38■□□□□ 0.85
UPF3A-208ENST00000484246 CT47B1P0C2W7 299 aaPredicted RBP20.38■□□□□ 0.85
UPF3A-208ENST00000484246 CHRNA5P30532 468 aa20.38■□□□□ 0.85
UPF3A-208ENST00000484246 PIM2Q9P1W9 311 aa20.38■□□□□ 0.85
UPF3A-208ENST00000484246 ANKRD31Q8N7Z5 1873 aa20.38■□□□□ 0.85
UPF3A-208ENST00000484246 ANKRD36CQ5JPF3 1778 aa20.38■□□□□ 0.85
UPF3A-208ENST00000484246 ADCY9O60503 1353 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 DLEC1Q9Y238 1755 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 H0YIN7 160 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 NPHP1O15259 732 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 FLIIQ13045 1269 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 KSR2Q6VAB6 950 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 RIC3Q7Z5B4 369 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 C2CD5Q86YS7 1000 aa20.37■□□□□ 0.85
UPF3A-208ENST00000484246 UTP14AQ9BVJ6 771 aaKnown RBP20.37■□□□□ 0.85
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms