RNA–Protein interactions for RNA: ENST00000480327.1

VCP-206, Transcript of valosin containing protein, humanhuman

TSL 5

Gene VCP, Length 884 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCP-206ENST00000480327 TTLL6Q8N841 843 aa11.91□□□□□ -0.5
VCP-206ENST00000480327 JMYQ8N9B5 988 aa11.91□□□□□ -0.5
VCP-206ENST00000480327 RTF1Q92541 710 aaKnown RBP11.91□□□□□ -0.5
VCP-206ENST00000480327 KLRG1Q96E93 195 aa11.91□□□□□ -0.5
VCP-206ENST00000480327 ZC3H4Q9UPT8 1303 aaKnown RBP11.9□□□□□ -0.5
VCP-206ENST00000480327 PRR5LQ6MZQ0 368 aa11.9□□□□□ -0.5
VCP-206ENST00000480327 C16orf71Q8IYS4 520 aaPredicted RBP11.9□□□□□ -0.5
VCP-206ENST00000480327 TBC1D2BQ9UPU7 963 aa11.9□□□□□ -0.5
VCP-206ENST00000480327 SALL2Q9Y467 1007 aaPredicted RBP11.9□□□□□ -0.5
VCP-206ENST00000480327 LAMB4A4D0S4 1761 aa11.9□□□□□ -0.51
VCP-206ENST00000480327 GLTPD2A6NH11 291 aa11.89□□□□□ -0.51
VCP-206ENST00000480327 A1BGP04217 495 aa11.89□□□□□ -0.51
VCP-206ENST00000480327 THUMPD2Q9BTF0 503 aaKnown RBP11.89□□□□□ -0.51
VCP-206ENST00000480327 KDM3BQ7LBC6 1761 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 PRAMEF22A3QJZ6 481 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 H0YIN7 160 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 CAMTA2O94983 1202 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 STARD3NLO95772 234 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 IL6STP40189 918 aaPredicted RBP11.88□□□□□ -0.51
VCP-206ENST00000480327 TTC5Q8N0Z6 440 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 NUP98P52948 1817 aa11.88□□□□□ -0.51
VCP-206ENST00000480327 A0A087WZG4 1122 aa11.87□□□□□ -0.51
VCP-206ENST00000480327 C21orf2O43822 256 aa11.87□□□□□ -0.51
VCP-206ENST00000480327 PIP4K2AP48426 406 aaPredicted RBP11.87□□□□□ -0.51
VCP-206ENST00000480327 TEFQ10587 303 aa11.87□□□□□ -0.51
VCP-206ENST00000480327 COL13A1Q5TAT6 717 aaPredicted RBP11.87□□□□□ -0.51
VCP-206ENST00000480327 SMC1BQ8NDV3 1235 aa11.87□□□□□ -0.51
VCP-206ENST00000480327 BRIP1Q9BX63 1249 aa11.87□□□□□ -0.51
VCP-206ENST00000480327 HTATSF1O43719 755 aaKnown RBP11.86□□□□□ -0.51
VCP-206ENST00000480327 VEGFAP15692 232 aaPredicted RBP11.86□□□□□ -0.51
VCP-206ENST00000480327 ZNF219Q9P2Y4 722 aaPredicted RBP11.86□□□□□ -0.51
VCP-206ENST00000480327 TRIM35Q9UPQ4 493 aa11.86□□□□□ -0.51
VCP-206ENST00000480327 USP16Q9Y5T5 823 aa11.86□□□□□ -0.51
VCP-206ENST00000480327 SCN4AP35499 1836 aa11.86□□□□□ -0.51
VCP-206ENST00000480327 ZNF622Q969S3 477 aaKnown RBP eCLIP11.85□□□□□ -0.51
VCP-206ENST00000480327 FMNL2Q96PY5 1086 aa11.85□□□□□ -0.51
VCP-206ENST00000480327 TEX13AQ9BXU3 409 aaPredicted RBP11.85□□□□□ -0.51
VCP-206ENST00000480327 MIS18AQ9NYP9 233 aa11.85□□□□□ -0.51
VCP-206ENST00000480327 ZNF330Q9Y3S2 320 aaPredicted RBP11.85□□□□□ -0.51
VCP-206ENST00000480327 ADAMTSL1Q8N6G6 1762 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 POTEIP0CG38 1075 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 POTEJP0CG39 1038 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 SRGNP10124 158 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 PDE6BP35913 854 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 LMOD3Q0VAK6 560 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 LAS1LQ9Y4W2 734 aaKnown RBP11.84□□□□□ -0.51
VCP-206ENST00000480327 LTBP3Q9NS15 1303 aa11.84□□□□□ -0.51
VCP-206ENST00000480327 BTBD11A6QL63 1104 aa11.83□□□□□ -0.52
VCP-206ENST00000480327 NBPF26B4DH59 902 aa11.83□□□□□ -0.52
VCP-206ENST00000480327 NBPF10Q6P3W6 841 aaKnown RBP11.83□□□□□ -0.52
VCP-206ENST00000480327 DZIP3Q86Y13 1208 aaKnown RBP11.83□□□□□ -0.52
VCP-206ENST00000480327 NBPF15Q8N660 670 aa11.83□□□□□ -0.52
VCP-206ENST00000480327 C7orf43Q8WVR3 580 aa11.83□□□□□ -0.52
VCP-206ENST00000480327 TAF7Q15545 349 aaPredicted RBP11.82□□□□□ -0.52
VCP-206ENST00000480327 ERFEQ4G0M1 354 aa11.82□□□□□ -0.52
VCP-206ENST00000480327 STYK1Q6J9G0 422 aa11.82□□□□□ -0.52
VCP-206ENST00000480327 PRPF40BQ6NWY9 871 aaKnown RBP11.82□□□□□ -0.52
VCP-206ENST00000480327 CNBD1Q8NA66 436 aa11.82□□□□□ -0.52
VCP-206ENST00000480327 SETDB2Q96T68 719 aa11.82□□□□□ -0.52
VCP-206ENST00000480327 PDZRN3Q9UPQ7 1066 aa11.82□□□□□ -0.52
VCP-206ENST00000480327 SNED1Q8TER0 1413 aa11.82□□□□□ -0.52
VCP-206ENST00000480327 DDNO94850 711 aaPredicted RBP11.81□□□□□ -0.52
VCP-206ENST00000480327 OLFM4Q6UX06 510 aa11.81□□□□□ -0.52
VCP-206ENST00000480327 TAOK3Q9H2K8 898 aa11.81□□□□□ -0.52
VCP-206ENST00000480327 COL4A5P29400 1685 aa11.81□□□□□ -0.52
VCP-206ENST00000480327 KLRG2A4D1S0 409 aaPredicted RBP11.8□□□□□ -0.52
VCP-206ENST00000480327 WWC1Q8IX03 1113 aa11.8□□□□□ -0.52
VCP-206ENST00000480327 CNKSR1Q969H4 720 aa11.8□□□□□ -0.52
VCP-206ENST00000480327 MASTLQ96GX5 879 aa11.8□□□□□ -0.52
VCP-206ENST00000480327 LTBP1Q14766 1721 aa11.8□□□□□ -0.52
VCP-206ENST00000480327 HLFQ16534 295 aa11.79□□□□□ -0.52
VCP-206ENST00000480327 CLEC4GQ6UXB4 293 aa11.79□□□□□ -0.52
VCP-206ENST00000480327 TSPYL4Q9UJ04 414 aa11.79□□□□□ -0.52
VCP-206ENST00000480327 LAMB2P55268 1798 aa11.79□□□□□ -0.52
VCP-206ENST00000480327 SNRPA1P09661 255 aaKnown RBP11.78□□□□□ -0.52
VCP-206ENST00000480327 HSPA1AP0DMV8 641 aaKnown RBP11.78□□□□□ -0.52
VCP-206ENST00000480327 HSPA1BP0DMV9 641 aaKnown RBP11.78□□□□□ -0.52
VCP-206ENST00000480327 ST5P78524 1137 aa11.78□□□□□ -0.52
VCP-206ENST00000480327 HNRNPUQ00839 825 aaKnown RBP eCLIP11.78□□□□□ -0.52
VCP-206ENST00000480327 CCDC27Q2M243 656 aa11.78□□□□□ -0.52
VCP-206ENST00000480327 DPY19L2Q6NUT2 758 aa11.78□□□□□ -0.52
VCP-206ENST00000480327 SLC51AQ86UW1 340 aa11.78□□□□□ -0.52
VCP-206ENST00000480327 ZNF541Q9H0D2 1346 aa11.78□□□□□ -0.52
VCP-206ENST00000480327 CALD1Q05682 793 aaKnown RBP11.77□□□□□ -0.53
VCP-206ENST00000480327 CHADLQ6NUI6 762 aa11.77□□□□□ -0.53
VCP-206ENST00000480327 NBPF5PQ86XG9 351 aaPredicted RBP11.77□□□□□ -0.53
VCP-206ENST00000480327 L3MBTL3Q96JM7 780 aaPredicted RBP11.77□□□□□ -0.53
VCP-206ENST00000480327 PASKQ96RG2 1323 aa11.77□□□□□ -0.53
VCP-206ENST00000480327 ABCC12Q96J65 1359 aa11.77□□□□□ -0.53
VCP-206ENST00000480327 ANKRD36CQ5JPF3 1778 aa11.77□□□□□ -0.53
VCP-206ENST00000480327 CHL1O00533 1208 aa11.76□□□□□ -0.53
VCP-206ENST00000480327 NPR1P16066 1061 aa11.76□□□□□ -0.53
VCP-206ENST00000480327 ZNF277Q9NRM2 450 aaPredicted RBP11.76□□□□□ -0.53
VCP-206ENST00000480327 NIP7Q9Y221 180 aaKnown RBP eCLIP11.76□□□□□ -0.53
VCP-206ENST00000480327 TAF1P21675 1872 aa11.76□□□□□ -0.53
VCP-206ENST00000480327 FAM177BA6PVY3 158 aa11.75□□□□□ -0.53
VCP-206ENST00000480327 RGL2O15211 777 aa11.75□□□□□ -0.53
VCP-206ENST00000480327 GNAI1P63096 354 aa11.75□□□□□ -0.53
VCP-206ENST00000480327 FKBP4Q02790 459 aaKnown RBP eCLIP11.75□□□□□ -0.53
VCP-206ENST00000480327 KRT24Q2M2I5 525 aa11.75□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms