RNA–Protein interactions for RNA: ENST00000477508.1

TOP3A-205, Transcript of DNA topoisomerase III alpha, humanhuman

TSL 2

Gene TOP3A, Length 600 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TOP3A-205ENST00000477508 FKBP8Q14318 412 aa16.9■□□□□ 0.3
TOP3A-205ENST00000477508 TSPYL6Q8N831 410 aa16.9■□□□□ 0.3
TOP3A-205ENST00000477508 CHPF2Q9P2E5 772 aa16.9■□□□□ 0.3
TOP3A-205ENST00000477508 CAMTA2O94983 1202 aa16.89■□□□□ 0.29
TOP3A-205ENST00000477508 LRP10Q7Z4F1 713 aa16.89■□□□□ 0.29
TOP3A-205ENST00000477508 STK31Q9BXU1 1019 aa16.89■□□□□ 0.29
TOP3A-205ENST00000477508 VAMP4O75379 141 aa16.88■□□□□ 0.29
TOP3A-205ENST00000477508 MMP10P09238 476 aa16.88■□□□□ 0.29
TOP3A-205ENST00000477508 TRMT2AQ8IZ69 625 aaKnown RBP16.88■□□□□ 0.29
TOP3A-205ENST00000477508 BCL2L12Q9HB09 334 aa16.88■□□□□ 0.29
TOP3A-205ENST00000477508 PARP3Q9Y6F1 533 aa16.88■□□□□ 0.29
TOP3A-205ENST00000477508 ZBED9Q6R2W3 1325 aa16.88■□□□□ 0.29
TOP3A-205ENST00000477508 MAP3K15Q6ZN16 1313 aa16.88■□□□□ 0.29
TOP3A-205ENST00000477508 TM4SF1P30408 202 aa16.87■□□□□ 0.29
TOP3A-205ENST00000477508 PROSER3Q2NL68 480 aa16.87■□□□□ 0.29
TOP3A-205ENST00000477508 ZNF428Q96B54 188 aa16.87■□□□□ 0.29
TOP3A-205ENST00000477508 SCN7AQ01118 1682 aa16.86■□□□□ 0.29
TOP3A-205ENST00000477508 CT47B1P0C2W7 299 aaPredicted RBP16.86■□□□□ 0.29
TOP3A-205ENST00000477508 TTLL7Q6ZT98 887 aa16.86■□□□□ 0.29
TOP3A-205ENST00000477508 COPS6Q7L5N1 327 aa16.86■□□□□ 0.29
TOP3A-205ENST00000477508 XAGE3Q8WTP9 111 aa16.86■□□□□ 0.29
TOP3A-205ENST00000477508 CDCA7LQ96GN5 454 aa16.86■□□□□ 0.29
TOP3A-205ENST00000477508 CACNA1FO60840 1977 aa16.86■□□□□ 0.29
TOP3A-205ENST00000477508 ANXA1P04083 346 aa16.85■□□□□ 0.29
TOP3A-205ENST00000477508 NFIXQ14938 502 aa16.85■□□□□ 0.29
TOP3A-205ENST00000477508 SETDB2Q96T68 719 aa16.85■□□□□ 0.29
TOP3A-205ENST00000477508 BCORQ6W2J9 1755 aa16.84■□□□□ 0.29
TOP3A-205ENST00000477508 DDX58O95786 925 aaKnown RBP16.84■□□□□ 0.29
TOP3A-205ENST00000477508 AIMP1Q12904 312 aaKnown RBP16.84■□□□□ 0.29
TOP3A-205ENST00000477508 HSP90AB3PQ58FF7 597 aa16.84■□□□□ 0.29
TOP3A-205ENST00000477508 POLRMTO00411 1230 aaKnown RBP16.83■□□□□ 0.28
TOP3A-205ENST00000477508 SLC4A2P04920 1241 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 TBC1D9BQ66K14 1250 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 GIGYF2Q6Y7W6 1299 aaKnown RBP16.83■□□□□ 0.28
TOP3A-205ENST00000477508 ANKRD13DQ6ZTN6 518 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 CARMIL3Q8ND23 1372 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 PLBD2Q8NHP8 589 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 ZBTB3Q9H5J0 574 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 CD2APQ9Y5K6 639 aa16.83■□□□□ 0.28
TOP3A-205ENST00000477508 DDR1Q08345 913 aa16.82■□□□□ 0.28
TOP3A-205ENST00000477508 HLFQ16534 295 aa16.82■□□□□ 0.28
TOP3A-205ENST00000477508 ATP10DQ9P241 1426 aa16.81■□□□□ 0.28
TOP3A-205ENST00000477508 SERPINB2P05120 415 aa16.81■□□□□ 0.28
TOP3A-205ENST00000477508 BICDL1Q6ZP65 573 aa16.81■□□□□ 0.28
TOP3A-205ENST00000477508 NIP7Q9Y221 180 aaKnown RBP eCLIP16.81■□□□□ 0.28
TOP3A-205ENST00000477508 NUP98P52948 1817 aa16.8■□□□□ 0.28
TOP3A-205ENST00000477508 FHDC1Q9C0D6 1143 aaPredicted RBP16.8■□□□□ 0.28
TOP3A-205ENST00000477508 PHAXQ9H814 394 aaKnown RBP16.8■□□□□ 0.28
TOP3A-205ENST00000477508 TCIRG1Q13488 830 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 ALDH1L2Q3SY69 923 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 PARP10Q53GL7 1025 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 TPTE2Q6XPS3 522 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 RIC3Q7Z5B4 369 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 SYT17Q9BSW7 474 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 NYXQ9GZU5 481 aa16.79■□□□□ 0.28
TOP3A-205ENST00000477508 TCERG1O14776 1098 aaKnown RBP16.78■□□□□ 0.28
TOP3A-205ENST00000477508 NPHP1O15259 732 aa16.78■□□□□ 0.28
TOP3A-205ENST00000477508 NBPF5PQ86XG9 351 aaPredicted RBP16.78■□□□□ 0.28
TOP3A-205ENST00000477508 ZNF34Q8IZ26 560 aa16.78■□□□□ 0.28
TOP3A-205ENST00000477508 TGFB2P61812 414 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 FLIIQ13045 1269 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 KSR2Q6VAB6 950 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 PPP1R42Q7Z4L9 355 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 KLHL34Q8N239 644 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 CNBD1Q8NA66 436 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 PDZRN3Q9UPQ7 1066 aa16.77■□□□□ 0.28
TOP3A-205ENST00000477508 C10orf71Q711Q0 1435 aa16.77■□□□□ 0.27
TOP3A-205ENST00000477508 IBTKQ9P2D0 1353 aaPredicted RBP16.77■□□□□ 0.27
TOP3A-205ENST00000477508 NRXN2Q9P2S2 1712 aa16.76■□□□□ 0.27
TOP3A-205ENST00000477508 ST5P78524 1137 aa16.76■□□□□ 0.27
TOP3A-205ENST00000477508 TRIM28Q13263 835 aaKnown RBP16.76■□□□□ 0.27
TOP3A-205ENST00000477508 AFDNP55196 1824 aaKnown RBP16.75■□□□□ 0.27
TOP3A-205ENST00000477508 RNF123Q5XPI4 1314 aa16.75■□□□□ 0.27
TOP3A-205ENST00000477508 GPTP24298 496 aa16.75■□□□□ 0.27
TOP3A-205ENST00000477508 GTF2E1P29083 439 aaPredicted RBP16.75■□□□□ 0.27
TOP3A-205ENST00000477508 FKBP5Q13451 457 aaPredicted RBP16.75■□□□□ 0.27
TOP3A-205ENST00000477508 G2E3Q7L622 706 aa16.75■□□□□ 0.27
TOP3A-205ENST00000477508 KIF13BQ9NQT8 1826 aa16.75■□□□□ 0.27
TOP3A-205ENST00000477508 PI4KAP2A4QPH2 592 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 NEXNQ0ZGT2 675 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 PRR5LQ6MZQ0 368 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 NLRP10Q86W26 655 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 PI4KAP1Q8N8J0 262 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 SSH1Q8WYL5 1049 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 ISCA1Q9BUE6 129 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 METTL22Q9BUU2 404 aaPredicted RBP16.74■□□□□ 0.27
TOP3A-205ENST00000477508 BRIP1Q9BX63 1249 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 MAP3K2Q9Y2U5 619 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 ANKRD36CQ5JPF3 1778 aa16.74■□□□□ 0.27
TOP3A-205ENST00000477508 PDE6BP35913 854 aa16.73■□□□□ 0.27
TOP3A-205ENST00000477508 BRPF1P55201 1214 aaPredicted RBP16.73■□□□□ 0.27
TOP3A-205ENST00000477508 MRPL50Q8N5N7 158 aaKnown RBP16.73■□□□□ 0.27
TOP3A-205ENST00000477508 UTP14AQ9BVJ6 771 aaKnown RBP16.73■□□□□ 0.27
TOP3A-205ENST00000477508 SMC4Q9NTJ3 1288 aa16.73■□□□□ 0.27
TOP3A-205ENST00000477508 PTPRCP08575 1304 aa16.72■□□□□ 0.27
TOP3A-205ENST00000477508 UBN2Q6ZU65 1347 aa16.72■□□□□ 0.27
TOP3A-205ENST00000477508 ARFGEF2Q9Y6D5 1785 aa16.72■□□□□ 0.27
TOP3A-205ENST00000477508 DCAF8L1A6NGE4 600 aa16.72■□□□□ 0.27
TOP3A-205ENST00000477508 SUSD4Q5VX71 490 aa16.72■□□□□ 0.27
TOP3A-205ENST00000477508 CCDC191Q8NCU4 936 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 13.7 ms