RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 ATP10DQ9P241 1426 aa23.48■■□□□ 1.35
UPF3A-203ENST00000474056 EIF2S2P20042 333 aaKnown RBP23.47■■□□□ 1.35
UPF3A-203ENST00000474056 HLFQ16534 295 aa23.47■■□□□ 1.35
UPF3A-203ENST00000474056 C2CD5Q86YS7 1000 aa23.47■■□□□ 1.35
UPF3A-203ENST00000474056 CNBD1Q8NA66 436 aa23.47■■□□□ 1.35
UPF3A-203ENST00000474056 ANP32CO43423 234 aa23.46■■□□□ 1.35
UPF3A-203ENST00000474056 ERBB4Q15303 1308 aa23.46■■□□□ 1.35
UPF3A-203ENST00000474056 KRT24Q2M2I5 525 aa23.46■■□□□ 1.35
UPF3A-203ENST00000474056 TTLL7Q6ZT98 887 aa23.46■■□□□ 1.35
UPF3A-203ENST00000474056 ARHGAP27Q6ZUM4 889 aa23.46■■□□□ 1.35
UPF3A-203ENST00000474056 CCDC88AQ3V6T2 1871 aa23.45■■□□□ 1.35
UPF3A-203ENST00000474056 RGL2O15211 777 aa23.45■■□□□ 1.34
UPF3A-203ENST00000474056 NIP7Q9Y221 180 aaKnown RBP eCLIP23.45■■□□□ 1.34
UPF3A-203ENST00000474056 ARFGEF2Q9Y6D5 1785 aa23.45■■□□□ 1.34
UPF3A-203ENST00000474056 MAP3K15Q6ZN16 1313 aa23.44■■□□□ 1.34
UPF3A-203ENST00000474056 NPHP1O15259 732 aa23.44■■□□□ 1.34
UPF3A-203ENST00000474056 BRIP1Q9BX63 1249 aa23.44■■□□□ 1.34
UPF3A-203ENST00000474056 H0YIN7 160 aa23.43■■□□□ 1.34
UPF3A-203ENST00000474056 ST5P78524 1137 aa23.43■■□□□ 1.34
UPF3A-203ENST00000474056 PDIA6Q15084 440 aa23.43■■□□□ 1.34
UPF3A-203ENST00000474056 NBPF5PQ86XG9 351 aaPredicted RBP23.43■■□□□ 1.34
UPF3A-203ENST00000474056 ERVV-1B6SEH8 477 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 ANXA1P04083 346 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 PDE6BP35913 854 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 PROSER3Q2NL68 480 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 LRP10Q7Z4F1 713 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 NECTIN2Q92692 538 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 CFAP44Q96MT7 982 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 ANKRD36CQ5JPF3 1778 aa23.42■■□□□ 1.34
UPF3A-203ENST00000474056 SLX4Q8IY92 1834 aa23.41■■□□□ 1.34
UPF3A-203ENST00000474056 KIF6Q6ZMV9 814 aa23.41■■□□□ 1.34
UPF3A-203ENST00000474056 TTLL6Q8N841 843 aa23.41■■□□□ 1.34
UPF3A-203ENST00000474056 ZBTB3Q9H5J0 574 aa23.41■■□□□ 1.34
UPF3A-203ENST00000474056 MRS2Q9HD23 443 aa23.41■■□□□ 1.34
UPF3A-203ENST00000474056 FAM177BA6PVY3 158 aa23.4■■□□□ 1.34
UPF3A-203ENST00000474056 PDZRN3Q9UPQ7 1066 aa23.4■■□□□ 1.34
UPF3A-203ENST00000474056 TNRC6CQ9HCJ0 1690 aaKnown RBP23.4■■□□□ 1.34
UPF3A-203ENST00000474056 ZNF622Q969S3 477 aaKnown RBP eCLIP23.39■■□□□ 1.33
UPF3A-203ENST00000474056 MBIPQ9NS73 344 aa23.39■■□□□ 1.33
UPF3A-203ENST00000474056 FER1L6Q2WGJ9 1857 aa23.39■■□□□ 1.33
UPF3A-203ENST00000474056 ZNF853P0CG23 659 aa23.38■■□□□ 1.33
UPF3A-203ENST00000474056 ZNF526Q8TF50 670 aaPredicted RBP23.38■■□□□ 1.33
UPF3A-203ENST00000474056 SENP3-EIF4A1A0A087X0R7 540 aa23.37■■□□□ 1.33
UPF3A-203ENST00000474056 TPTE2Q6XPS3 522 aa23.37■■□□□ 1.33
UPF3A-203ENST00000474056 UBN2Q6ZU65 1347 aa23.36■■□□□ 1.33
UPF3A-203ENST00000474056 GIGYF2Q6Y7W6 1299 aaKnown RBP23.36■■□□□ 1.33
UPF3A-203ENST00000474056 IFT57Q9NWB7 429 aa23.36■■□□□ 1.33
UPF3A-203ENST00000474056 HOXB7P09629 217 aa23.35■■□□□ 1.33
UPF3A-203ENST00000474056 SRGNP10124 158 aa23.35■■□□□ 1.33
UPF3A-203ENST00000474056 GPTP24298 496 aa23.35■■□□□ 1.33
UPF3A-203ENST00000474056 RASSF7Q02833 373 aa23.35■■□□□ 1.33
UPF3A-203ENST00000474056 C9orf131Q5VYM1 1079 aa23.35■■□□□ 1.33
UPF3A-203ENST00000474056 GPBP1L1Q9HC44 474 aaPredicted RBP23.35■■□□□ 1.33
UPF3A-203ENST00000474056 GNAI1P63096 354 aa23.34■■□□□ 1.33
UPF3A-203ENST00000474056 HDGFL1Q5TGJ6 251 aa23.34■■□□□ 1.33
UPF3A-203ENST00000474056 MASTLQ96GX5 879 aa23.34■■□□□ 1.33
UPF3A-203ENST00000474056 DDX21Q9NR30 783 aaKnown RBP eCLIP23.34■■□□□ 1.33
UPF3A-203ENST00000474056 CHPF2Q9P2E5 772 aa23.34■■□□□ 1.33
UPF3A-203ENST00000474056 ABCC12Q96J65 1359 aa23.34■■□□□ 1.33
UPF3A-203ENST00000474056 DICER1Q9UPY3 1922 aaKnown RBP23.33■■□□□ 1.33
UPF3A-203ENST00000474056 CALD1Q05682 793 aaKnown RBP23.33■■□□□ 1.33
UPF3A-203ENST00000474056 AIMP1Q12904 312 aaKnown RBP23.33■■□□□ 1.33
UPF3A-203ENST00000474056 DUSP27Q5VZP5 1158 aa23.33■■□□□ 1.33
UPF3A-203ENST00000474056 STYK1Q6J9G0 422 aa23.33■■□□□ 1.33
UPF3A-203ENST00000474056 COPS6Q7L5N1 327 aa23.33■■□□□ 1.33
UPF3A-203ENST00000474056 NUTM1Q86Y26 1132 aa23.33■■□□□ 1.33
UPF3A-203ENST00000474056 ZNF34Q8IZ26 560 aa23.33■■□□□ 1.33
UPF3A-203ENST00000474056 XAGE3Q8WTP9 111 aa23.33■■□□□ 1.33
UPF3A-203ENST00000474056 ZNF219Q9P2Y4 722 aaPredicted RBP23.33■■□□□ 1.33
UPF3A-203ENST00000474056 TIAM2Q8IVF5 1701 aa23.33■■□□□ 1.32
UPF3A-203ENST00000474056 GTF2E1P29083 439 aaPredicted RBP23.32■■□□□ 1.32
UPF3A-203ENST00000474056 NYXQ9GZU5 481 aa23.32■■□□□ 1.32
UPF3A-203ENST00000474056 RNF181Q9P0P0 153 aa23.32■■□□□ 1.32
UPF3A-203ENST00000474056 IBTKQ9P2D0 1353 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-203ENST00000474056 KLRG2A4D1S0 409 aaPredicted RBP23.31■■□□□ 1.32
UPF3A-203ENST00000474056 C21orf2O43822 256 aa23.31■■□□□ 1.32
UPF3A-203ENST00000474056 SUSD4Q5VX71 490 aa23.31■■□□□ 1.32
UPF3A-203ENST00000474056 CNKSR1Q969H4 720 aa23.31■■□□□ 1.32
UPF3A-203ENST00000474056 NFKBIEO00221 500 aa23.3■■□□□ 1.32
UPF3A-203ENST00000474056 PRELPP51888 382 aa23.3■■□□□ 1.32
UPF3A-203ENST00000474056 ERFEQ4G0M1 354 aa23.3■■□□□ 1.32
UPF3A-203ENST00000474056 LAMB2P55268 1798 aa23.29■■□□□ 1.32
UPF3A-203ENST00000474056 NTSR2O95665 410 aa23.29■■□□□ 1.32
UPF3A-203ENST00000474056 C1QTNF8P60827 252 aa23.29■■□□□ 1.32
UPF3A-203ENST00000474056 CCDC27Q2M243 656 aa23.29■■□□□ 1.32
UPF3A-203ENST00000474056 PRPF40BQ6NWY9 871 aaKnown RBP23.29■■□□□ 1.32
UPF3A-203ENST00000474056 NPR1P16066 1061 aa23.28■■□□□ 1.32
UPF3A-203ENST00000474056 WWC1Q8IX03 1113 aa23.28■■□□□ 1.32
UPF3A-203ENST00000474056 RIC1Q4ADV7 1423 aa23.27■■□□□ 1.32
UPF3A-203ENST00000474056 ELL2O00472 640 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-203ENST00000474056 PARP10Q53GL7 1025 aa23.27■■□□□ 1.32
UPF3A-203ENST00000474056 DBF4Q9UBU7 674 aaPredicted RBP23.27■■□□□ 1.32
UPF3A-203ENST00000474056 PPP1R42Q7Z4L9 355 aa23.26■■□□□ 1.31
UPF3A-203ENST00000474056 C8orf58Q8NAV2 365 aa23.26■■□□□ 1.31
UPF3A-203ENST00000474056 LMNB1P20700 586 aa23.25■■□□□ 1.31
UPF3A-203ENST00000474056 TSR2Q969E8 191 aaKnown RBP23.25■■□□□ 1.31
UPF3A-203ENST00000474056 CRY2Q49AN0 593 aa23.24■■□□□ 1.31
UPF3A-203ENST00000474056 HSP90AB3PQ58FF7 597 aa23.24■■□□□ 1.31
UPF3A-203ENST00000474056 KIF3CO14782 793 aa23.23■■□□□ 1.31
UPF3A-203ENST00000474056 TCIRG1Q13488 830 aa23.23■■□□□ 1.31
Retrieved 100 of 20,778 RNA–protein pairs in 48.1 ms