RNA–Protein interactions for RNA: ENST00000474056.5

UPF3A-203, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 748 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-203ENST00000474056 NISCHQ9Y2I1 1504 aa44.27■■■■■ 4.68
UPF3A-203ENST00000474056 CCDC180Q9P1Z9 1646 aa39.56■■■■□ 3.92
UPF3A-203ENST00000474056 ABCC9O60706 1549 aa38.98■■■■□ 3.83
UPF3A-203ENST00000474056 RB1CC1Q8TDY2 1594 aa37.34■■■■□ 3.57
UPF3A-203ENST00000474056 NACADO15069 1562 aa37.21■■■■□ 3.55
UPF3A-203ENST00000474056 DCAF8L2P0C7V8 631 aa37.06■■■■□ 3.52
UPF3A-203ENST00000474056 MYO15BQ96JP2 1530 aa36.85■■■■□ 3.49
UPF3A-203ENST00000474056 ZCCHC6Q5VYS8 1495 aaKnown RBP36.83■■■■□ 3.49
UPF3A-203ENST00000474056 UNC13AQ9UPW8 1703 aa36.66■■■■□ 3.46
UPF3A-203ENST00000474056 DCAF1Q9Y4B6 1507 aa36.59■■■■□ 3.45
UPF3A-203ENST00000474056 PABPN1Q86U42 306 aaKnown RBP eCLIP36.33■■■■□ 3.41
UPF3A-203ENST00000474056 BICRAQ9NZM4 1560 aa36.27■■■■□ 3.4
UPF3A-203ENST00000474056 SCRIBQ14160 1630 aa36.08■■■■□ 3.37
UPF3A-203ENST00000474056 DNAJC5BQ9UF47 199 aa36.05■■■■□ 3.36
UPF3A-203ENST00000474056 SHROOM4Q9ULL8 1493 aa35.77■■■■□ 3.32
UPF3A-203ENST00000474056 EIF4G1Q04637 1599 aaKnown RBP35.32■■■■□ 3.24
UPF3A-203ENST00000474056 CC2D2AQ9P2K1 1620 aa35.28■■■■□ 3.24
UPF3A-203ENST00000474056 CECR2Q9BXF3 1484 aa35.04■■■■□ 3.2
UPF3A-203ENST00000474056 SMARCA4P51532 1647 aa34.47■■■■□ 3.11
UPF3A-203ENST00000474056 BAZ1AQ9NRL2 1556 aaPredicted RBP34.33■■■■□ 3.09
UPF3A-203ENST00000474056 NCAPD3P42695 1498 aa34.31■■■■□ 3.08
UPF3A-203ENST00000474056 ATAD2BQ9ULI0 1458 aa34.31■■■■□ 3.08
UPF3A-203ENST00000474056 SMARCA2P51531 1590 aa34.25■■■■□ 3.07
UPF3A-203ENST00000474056 HMGXB3Q12766 1538 aa34.16■■■■□ 3.06
UPF3A-203ENST00000474056 MROH2BQ7Z745 1585 aa34.14■■■■□ 3.06
UPF3A-203ENST00000474056 PEG3Q9GZU2 1588 aa34.11■■■■□ 3.05
UPF3A-203ENST00000474056 BAZ1BQ9UIG0 1483 aaKnown RBP34.01■■■■□ 3.03
UPF3A-203ENST00000474056 WIZO95785 1651 aa33.8■■■■□ 3
UPF3A-203ENST00000474056 NESP48681 1621 aa33.66■■■□□ 2.98
UPF3A-203ENST00000474056 ERCC6Q03468 1493 aa33.59■■■□□ 2.97
UPF3A-203ENST00000474056 RSF1Q96T23 1441 aaPredicted RBP33.59■■■□□ 2.97
UPF3A-203ENST00000474056 LAMC3Q9Y6N6 1575 aa33.5■■■□□ 2.95
UPF3A-203ENST00000474056 TOP2AP11388 1531 aaKnown RBP33.38■■■□□ 2.93
UPF3A-203ENST00000474056 CUX2O14529 1486 aa33.35■■■□□ 2.93
UPF3A-203ENST00000474056 KIF21AQ7Z4S6 1674 aa33.33■■■□□ 2.93
UPF3A-203ENST00000474056 CADPSQ9ULU8 1353 aa33.29■■■□□ 2.92
UPF3A-203ENST00000474056 THOC2Q8NI27 1593 aaKnown RBP33.26■■■□□ 2.91
UPF3A-203ENST00000474056 PDS5BQ9NTI5 1447 aa33.22■■■□□ 2.91
UPF3A-203ENST00000474056 CFTRP13569 1480 aa33.05■■■□□ 2.88
UPF3A-203ENST00000474056 CCDC88BA6NC98 1476 aa32.96■■■□□ 2.87
UPF3A-203ENST00000474056 FANCD2Q9BXW9 1451 aa32.94■■■□□ 2.86
UPF3A-203ENST00000474056 MRC2Q9UBG0 1479 aa32.94■■■□□ 2.86
UPF3A-203ENST00000474056 PRDM2Q13029 1718 aa32.93■■■□□ 2.86
UPF3A-203ENST00000474056 CEP164Q9UPV0 1460 aa32.93■■■□□ 2.86
UPF3A-203ENST00000474056 WDR62O43379 1518 aa32.87■■■□□ 2.85
UPF3A-203ENST00000474056 DNAJC5Q9H3Z4 198 aa32.66■■■□□ 2.82
UPF3A-203ENST00000474056 URB2Q14146 1524 aaKnown RBP32.66■■■□□ 2.82
UPF3A-203ENST00000474056 SUPT5HO00267 1087 aaKnown RBP32.48■■■□□ 2.79
UPF3A-203ENST00000474056 TOPBP1Q92547 1522 aa32.4■■■□□ 2.78
UPF3A-203ENST00000474056 DNMBPQ6XZF7 1577 aa32.34■■■□□ 2.77
UPF3A-203ENST00000474056 ABCC8Q09428 1581 aa32.31■■■□□ 2.76
UPF3A-203ENST00000474056 IFT140Q96RY7 1462 aa32.23■■■□□ 2.75
UPF3A-203ENST00000474056 ZNF608Q9ULD9 1512 aaPredicted RBP32.16■■■□□ 2.74
UPF3A-203ENST00000474056 POLA1P09884 1462 aaPredicted RBP32.1■■■□□ 2.73
UPF3A-203ENST00000474056 TARBP1Q13395 1621 aaKnown RBP32.09■■■□□ 2.73
UPF3A-203ENST00000474056 EIF4G3O43432 1585 aaKnown RBP32.07■■■□□ 2.72
UPF3A-203ENST00000474056 CUX1P39880 1505 aa32.05■■■□□ 2.72
UPF3A-203ENST00000474056 FGD5Q6ZNL6 1462 aa31.97■■■□□ 2.71
UPF3A-203ENST00000474056 RAD54L2Q9Y4B4 1467 aa31.97■■■□□ 2.71
UPF3A-203ENST00000474056 AQRO60306 1485 aaKnown RBP eCLIP31.92■■■□□ 2.73e-6■□□□□ 10.3
UPF3A-203ENST00000474056 SOGA1O94964 1423 aa31.92■■■□□ 2.7
UPF3A-203ENST00000474056 OSCARQ8IYS5 282 aa31.85■■■□□ 2.69
UPF3A-203ENST00000474056 WDR97A6NE52 1622 aa31.82■■■□□ 2.68
UPF3A-203ENST00000474056 TDRD9Q8NDG6 1382 aaKnown RBP31.79■■■□□ 2.68
UPF3A-203ENST00000474056 CHD1O14646 1710 aa31.77■■■□□ 2.68
UPF3A-203ENST00000474056 BIVM-ERCC5R4GMW8 1640 aa31.72■■■□□ 2.67
UPF3A-203ENST00000474056 SYNJ1O43426 1573 aa31.69■■■□□ 2.66
UPF3A-203ENST00000474056 TOP2BQ02880 1626 aa31.69■■■□□ 2.66
UPF3A-203ENST00000474056 WRNQ14191 1432 aaPredicted RBP eCLIP31.67■■■□□ 2.66
UPF3A-203ENST00000474056 SNAPC4Q5SXM2 1469 aa31.64■■■□□ 2.66
UPF3A-203ENST00000474056 ABCA10Q8WWZ4 1543 aa31.64■■■□□ 2.66
UPF3A-203ENST00000474056 PBRM1Q86U86 1689 aa31.64■■■□□ 2.65
UPF3A-203ENST00000474056 ABCA5Q8WWZ7 1642 aa31.6■■■□□ 2.65
UPF3A-203ENST00000474056 GRIN2BQ13224 1484 aa31.59■■■□□ 2.65
UPF3A-203ENST00000474056 GAPVD1Q14C86 1478 aa31.56■■■□□ 2.64
UPF3A-203ENST00000474056 MAGI1Q96QZ7 1491 aaPredicted RBP31.55■■■□□ 2.64
UPF3A-203ENST00000474056 FBLN2P98095 1184 aa31.55■■■□□ 2.64
UPF3A-203ENST00000474056 RIMBP3CA6NJZ7 1639 aa31.52■■■□□ 2.64
UPF3A-203ENST00000474056 RIMBP3BA6NNM3 1639 aa31.52■■■□□ 2.64
UPF3A-203ENST00000474056 RIMBP3Q9UFD9 1639 aa31.52■■■□□ 2.64
UPF3A-203ENST00000474056 TRIM41Q8WV44 630 aa31.48■■■□□ 2.63
UPF3A-203ENST00000474056 ARHGEF11O15085 1522 aa31.44■■■□□ 2.62
UPF3A-203ENST00000474056 SYNJ2O15056 1496 aa31.43■■■□□ 2.62
UPF3A-203ENST00000474056 CHMP7Q8WUX9 453 aaPredicted RBP31.4■■■□□ 2.62
UPF3A-203ENST00000474056 CLASP1Q7Z460 1538 aa31.34■■■□□ 2.61
UPF3A-203ENST00000474056 ADAMTS12P58397 1594 aa31.31■■■□□ 2.6
UPF3A-203ENST00000474056 ERICH3Q5RHP9 1530 aa31.25■■■□□ 2.59
UPF3A-203ENST00000474056 GRIN2AQ12879 1464 aa31.21■■■□□ 2.59
UPF3A-203ENST00000474056 FHAD1B1AJZ9 1412 aa31.16■■■□□ 2.58
UPF3A-203ENST00000474056 ARAP1Q96P48 1450 aa31.16■■■□□ 2.58
UPF3A-203ENST00000474056 CEP170Q5SW79 1584 aa31.12■■■□□ 2.57
UPF3A-203ENST00000474056 CYB5RLQ6IPT4 315 aa31.09■■■□□ 2.57
UPF3A-203ENST00000474056 NUP160Q12769 1436 aa31.07■■■□□ 2.57
UPF3A-203ENST00000474056 KIF27Q86VH2 1401 aa31.01■■■□□ 2.55
UPF3A-203ENST00000474056 CUL7Q14999 1698 aa30.94■■■□□ 2.54
UPF3A-203ENST00000474056 IGF1RP08069 1367 aa30.93■■■□□ 2.54
UPF3A-203ENST00000474056 SHROOM2Q13796 1616 aa30.93■■■□□ 2.54
UPF3A-203ENST00000474056 ERCC6L2Q5T890 1561 aa30.92■■■□□ 2.54
UPF3A-203ENST00000474056 RUSC2Q8N2Y8 1516 aa30.86■■■□□ 2.53
UPF3A-203ENST00000474056 CARMIL1Q5VZK9 1371 aa30.75■■■□□ 2.51
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms