RNA–Protein interactions for RNA: ENST00000473778.5

C9orf3-214, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 2,396 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-214ENST00000473778 ADCK5Q3MIX3 580 aa13.23□□□□□ -0.29
C9orf3-214ENST00000473778 USP42Q9H9J4 1324 aaKnown RBP13.22□□□□□ -0.29
C9orf3-214ENST00000473778 MBD3O95983 291 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 HOXB7P09629 217 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 NOL7Q9UMY1 257 aaKnown RBP13.22□□□□□ -0.29
C9orf3-214ENST00000473778 MAP3K2Q9Y2U5 619 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 PHRF1Q9P1Y6 1649 aaKnown RBP13.22□□□□□ -0.29
C9orf3-214ENST00000473778 EPB41L2O43491 1005 aaKnown RBP13.22□□□□□ -0.29
C9orf3-214ENST00000473778 ESCO1Q5FWF5 840 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 AKAP4Q5JQC9 854 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 CNTROBQ8N137 903 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 KAZALD1Q96I82 304 aa13.22□□□□□ -0.29
C9orf3-214ENST00000473778 TEFQ10587 303 aa13.21□□□□□ -0.29
C9orf3-214ENST00000473778 MTX1Q13505 466 aa13.21□□□□□ -0.29
C9orf3-214ENST00000473778 CNPY2Q9Y2B0 182 aa13.21□□□□□ -0.29
C9orf3-214ENST00000473778 HEG1Q9ULI3 1381 aa13.21□□□□□ -0.3
C9orf3-214ENST00000473778 RNMTO43148 476 aaKnown RBP13.21□□□□□ -0.3
C9orf3-214ENST00000473778 GIGYF1O75420 1035 aaPredicted RBP13.21□□□□□ -0.3
C9orf3-214ENST00000473778 ST3GAL1Q11201 340 aa13.21□□□□□ -0.3
C9orf3-214ENST00000473778 KIAA1211Q6ZU35 1233 aa13.21□□□□□ -0.3
C9orf3-214ENST00000473778 DDX54Q8TDD1 881 aaKnown RBP13.21□□□□□ -0.3
C9orf3-214ENST00000473778 AXIN2Q9Y2T1 843 aa13.21□□□□□ -0.3
C9orf3-214ENST00000473778 ZBTB22O15209 634 aa13.2□□□□□ -0.3
C9orf3-214ENST00000473778 CACNB1Q02641 598 aaPredicted RBP13.2□□□□□ -0.3
C9orf3-214ENST00000473778 TPRNQ4KMQ1 711 aa13.2□□□□□ -0.3
C9orf3-214ENST00000473778 SIPA1L3O60292 1781 aaPredicted RBP13.2□□□□□ -0.3
C9orf3-214ENST00000473778 WDR33Q9C0J8 1336 aaKnown RBP13.2□□□□□ -0.3
C9orf3-214ENST00000473778 OFD1O75665 1012 aa13.2□□□□□ -0.3
C9orf3-214ENST00000473778 CASTP20810 708 aaKnown RBP13.2□□□□□ -0.3
C9orf3-214ENST00000473778 SYT1P21579 422 aa13.2□□□□□ -0.3
C9orf3-214ENST00000473778 MSNP26038 577 aaKnown RBP13.2□□□□□ -0.3
C9orf3-214ENST00000473778 PSME1Q06323 249 aa13.2□□□□□ -0.3
C9orf3-214ENST00000473778 HYPKQ9NX55 129 aa13.2□□□□□ -0.3
C9orf3-214ENST00000473778 DBF4Q9UBU7 674 aaPredicted RBP13.2□□□□□ -0.3
C9orf3-214ENST00000473778 RBM10P98175 930 aaKnown RBP13.19□□□□□ -0.3
C9orf3-214ENST00000473778 C1QBPQ07021 282 aaKnown RBP13.19□□□□□ -0.3
C9orf3-214ENST00000473778 HS1BP3Q53T59 392 aa13.19□□□□□ -0.3
C9orf3-214ENST00000473778 ORAI2Q96SN7 254 aa13.19□□□□□ -0.3
C9orf3-214ENST00000473778 NCAPD2Q15021 1401 aa13.19□□□□□ -0.3
C9orf3-214ENST00000473778 TTC41PQ6P2S7 1318 aa13.19□□□□□ -0.3
C9orf3-214ENST00000473778 RGPD5Q99666 1765 aa13.19□□□□□ -0.3
C9orf3-214ENST00000473778 GLRX3O76003 335 aaKnown RBP13.18□□□□□ -0.3
C9orf3-214ENST00000473778 SASH1O94885 1247 aa13.18□□□□□ -0.3
C9orf3-214ENST00000473778 GCP02774 474 aa13.18□□□□□ -0.3
C9orf3-214ENST00000473778 OS9Q13438 667 aaPredicted RBP13.18□□□□□ -0.3
C9orf3-214ENST00000473778 A0A0U1RQG5 324 aaPredicted RBP13.18□□□□□ -0.3
C9orf3-214ENST00000473778 PRPF40BQ6NWY9 871 aaKnown RBP13.18□□□□□ -0.3
C9orf3-214ENST00000473778 ARHGEF25Q86VW2 580 aa13.18□□□□□ -0.3
C9orf3-214ENST00000473778 SUCLG2Q96I99 432 aa13.18□□□□□ -0.3
C9orf3-214ENST00000473778 TLR7Q9NYK1 1049 aaKnown RBP13.18□□□□□ -0.3
C9orf3-214ENST00000473778 C9orf78Q9NZ63 289 aaPredicted RBP13.18□□□□□ -0.3
C9orf3-214ENST00000473778 LIMCH1Q9UPQ0 1083 aa13.18□□□□□ -0.3
C9orf3-214ENST00000473778 STX6O43752 255 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 ZNF500O60304 480 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-214ENST00000473778 ZSCAN22P10073 491 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-214ENST00000473778 KSR2Q6VAB6 950 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 CLASRPQ8N2M8 674 aaKnown RBP13.17□□□□□ -0.3
C9orf3-214ENST00000473778 TMEM87AQ8NBN3 555 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 FAM227BQ96M60 508 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 TSPY26PQ9H489 355 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 ECHDC1Q9NTX5 307 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 PDIA6Q15084 440 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 PLEKHO1Q53GL0 409 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-214ENST00000473778 KLHDC4Q8TBB5 520 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 EAF2Q96CJ1 260 aaPredicted RBP13.17□□□□□ -0.3
C9orf3-214ENST00000473778 DIAPH3Q9NSV4 1193 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 ZKSCAN5Q9Y2L8 839 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 TAF6LQ9Y6J9 622 aa13.17□□□□□ -0.3
C9orf3-214ENST00000473778 NECTIN1Q15223 517 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 HSP90AB4PQ58FF6 505 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 AACSQ86V21 672 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 CCDC83Q8IWF9 413 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 KCNH5Q8NCM2 988 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 JAKMIP1Q96N16 626 aaKnown RBP13.16□□□□□ -0.3
C9orf3-214ENST00000473778 BICC1Q9H694 974 aaKnown RBP13.16□□□□□ -0.3
C9orf3-214ENST00000473778 C5P01031 1676 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 ADGRL3Q9HAR2 1447 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 F13A1P00488 732 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 AIMP1Q12904 312 aaKnown RBP13.16□□□□□ -0.3
C9orf3-214ENST00000473778 MPNDQ8N594 471 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 ANKRD24Q8TF21 1146 aa13.16□□□□□ -0.3
C9orf3-214ENST00000473778 ALDH1L1O75891 902 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 IGKV5-2P06315 115 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 ME3Q16798 604 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 KCNB2Q92953 911 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 CCDC8Q9H0W5 538 aaPredicted RBP13.15□□□□□ -0.3
C9orf3-214ENST00000473778 PDCL3Q9H2J4 239 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 CAMTA1Q9Y6Y1 1673 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 KDM4FA0A1W2PPD8 638 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 FIBPO43427 364 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 GJB2P29033 226 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 SLC39A6Q13433 755 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 C1orf141Q5JVX7 400 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 NECAB1Q8N987 351 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 ZSWIM6Q9HCJ5 1215 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 SLIT3O75094 1523 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 ADAMTS7Q9UKP4 1686 aa13.15□□□□□ -0.3
C9orf3-214ENST00000473778 GRM8O00222 908 aa13.14□□□□□ -0.31
C9orf3-214ENST00000473778 IFIT2P09913 472 aaKnown RBP13.14□□□□□ -0.31
C9orf3-214ENST00000473778 AMOTQ4VCS5 1084 aa13.14□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 196.9 ms