RNA–Protein interactions for RNA: ENST00000437607.1

PTPRF-208, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 788 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-208ENST00000437607 KDM3BQ7LBC6 1761 aa16.01■□□□□ 0.15
PTPRF-208ENST00000437607 SMC1BQ8NDV3 1235 aa16.01■□□□□ 0.15
PTPRF-208ENST00000437607 FMNL2Q96PY5 1086 aa16.01■□□□□ 0.15
PTPRF-208ENST00000437607 BRIP1Q9BX63 1249 aa16.01■□□□□ 0.15
PTPRF-208ENST00000437607 ZNF330Q9Y3S2 320 aaPredicted RBP16.01■□□□□ 0.15
PTPRF-208ENST00000437607 SCN4AP35499 1836 aa16.01■□□□□ 0.15
PTPRF-208ENST00000437607 VEGFAP15692 232 aaPredicted RBP16■□□□□ 0.15
PTPRF-208ENST00000437607 PRKAR2BP31323 418 aa16■□□□□ 0.15
PTPRF-208ENST00000437607 PNISRQ8TF01 805 aaKnown RBP16■□□□□ 0.15
PTPRF-208ENST00000437607 ZNF622Q969S3 477 aaKnown RBP eCLIP16■□□□□ 0.15
PTPRF-208ENST00000437607 ZNF219Q9P2Y4 722 aaPredicted RBP16■□□□□ 0.15
PTPRF-208ENST00000437607 PRAMEF22A3QJZ6 481 aa15.99■□□□□ 0.15
PTPRF-208ENST00000437607 C21orf2O43822 256 aa15.99■□□□□ 0.15
PTPRF-208ENST00000437607 PDE6BP35913 854 aa15.99■□□□□ 0.15
PTPRF-208ENST00000437607 YTHDC1Q96MU7 727 aaKnown RBP15.99■□□□□ 0.15
PTPRF-208ENST00000437607 USP16Q9Y5T5 823 aa15.99■□□□□ 0.15
PTPRF-208ENST00000437607 BTBD11A6QL63 1104 aa15.98■□□□□ 0.15
PTPRF-208ENST00000437607 PIP4K2AP48426 406 aaPredicted RBP15.98■□□□□ 0.15
PTPRF-208ENST00000437607 PDZRN3Q9UPQ7 1066 aa15.98■□□□□ 0.15
PTPRF-208ENST00000437607 SETDB2Q96T68 719 aa15.97■□□□□ 0.15
PTPRF-208ENST00000437607 LTBP3Q9NS15 1303 aa15.96■□□□□ 0.15
PTPRF-208ENST00000437607 COL13A1Q5TAT6 717 aaPredicted RBP15.96■□□□□ 0.15
PTPRF-208ENST00000437607 DZIP3Q86Y13 1208 aaKnown RBP15.96■□□□□ 0.15
PTPRF-208ENST00000437607 CNBD1Q8NA66 436 aa15.96■□□□□ 0.15
PTPRF-208ENST00000437607 U2AF1L5P0DN76 240 aaPredicted RBP15.95■□□□□ 0.14
PTPRF-208ENST00000437607 SRGNP10124 158 aa15.95■□□□□ 0.14
PTPRF-208ENST00000437607 U2AF1Q01081 240 aaKnown RBP eCLIP15.95■□□□□ 0.14
PTPRF-208ENST00000437607 STYK1Q6J9G0 422 aa15.95■□□□□ 0.14
PTPRF-208ENST00000437607 MCM10Q7L590 875 aa15.95■□□□□ 0.14
PTPRF-208ENST00000437607 ERFEQ4G0M1 354 aa15.94■□□□□ 0.14
PTPRF-208ENST00000437607 PRPF40BQ6NWY9 871 aaKnown RBP15.94■□□□□ 0.14
PTPRF-208ENST00000437607 NBPF26B4DH59 902 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 ST5P78524 1137 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 DCTN1Q14203 1278 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 NBPF10Q6P3W6 841 aaKnown RBP15.93■□□□□ 0.14
PTPRF-208ENST00000437607 NBPF15Q8N660 670 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 C7orf43Q8WVR3 580 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 CNKSR1Q969H4 720 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 MASTLQ96GX5 879 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 TAOK3Q9H2K8 898 aa15.93■□□□□ 0.14
PTPRF-208ENST00000437607 ADAMTSL1Q8N6G6 1762 aa15.92■□□□□ 0.14
PTPRF-208ENST00000437607 HNRNPUQ00839 825 aaKnown RBP eCLIP15.92■□□□□ 0.14
PTPRF-208ENST00000437607 DPY19L2Q6NUT2 758 aa15.92■□□□□ 0.14
PTPRF-208ENST00000437607 CLEC4GQ6UXB4 293 aa15.92■□□□□ 0.14
PTPRF-208ENST00000437607 ADAMTS8Q9UP79 889 aa15.92■□□□□ 0.14
PTPRF-208ENST00000437607 DDNO94850 711 aaPredicted RBP15.91■□□□□ 0.14
PTPRF-208ENST00000437607 SNRPA1P09661 255 aaKnown RBP15.91■□□□□ 0.14
PTPRF-208ENST00000437607 POTEIP0CG38 1075 aa15.91■□□□□ 0.14
PTPRF-208ENST00000437607 POTEJP0CG39 1038 aa15.91■□□□□ 0.14
PTPRF-208ENST00000437607 NPM2Q86SE8 214 aaKnown RBP15.91■□□□□ 0.14
PTPRF-208ENST00000437607 KLRG2A4D1S0 409 aaPredicted RBP15.9■□□□□ 0.14
PTPRF-208ENST00000437607 NEFMP07197 916 aa15.9■□□□□ 0.14
PTPRF-208ENST00000437607 PNNQ9H307 717 aaKnown RBP15.9■□□□□ 0.14
PTPRF-208ENST00000437607 MAPK8IP3Q9UPT6 1336 aa15.9■□□□□ 0.14
PTPRF-208ENST00000437607 NPHP1O15259 732 aa15.89■□□□□ 0.13
PTPRF-208ENST00000437607 HLFQ16534 295 aa15.89■□□□□ 0.13
PTPRF-208ENST00000437607 NBPF5PQ86XG9 351 aaPredicted RBP15.89■□□□□ 0.13
PTPRF-208ENST00000437607 RTF1Q92541 710 aaKnown RBP15.89■□□□□ 0.13
PTPRF-208ENST00000437607 LAMB2P55268 1798 aa15.89■□□□□ 0.13
PTPRF-208ENST00000437607 SOGA3Q5TF21 947 aa15.88■□□□□ 0.13
PTPRF-208ENST00000437607 CHADLQ6NUI6 762 aa15.88■□□□□ 0.13
PTPRF-208ENST00000437607 OLFM4Q6UX06 510 aa15.88■□□□□ 0.13
PTPRF-208ENST00000437607 CCDC146Q8IYE0 955 aa15.88■□□□□ 0.13
PTPRF-208ENST00000437607 NIP7Q9Y221 180 aaKnown RBP eCLIP15.88■□□□□ 0.13
PTPRF-208ENST00000437607 ZNF652Q9Y2D9 606 aa15.88■□□□□ 0.13
PTPRF-208ENST00000437607 ANKRD36CQ5JPF3 1778 aa15.87■□□□□ 0.13
PTPRF-208ENST00000437607 SNED1Q8TER0 1413 aa15.87■□□□□ 0.13
PTPRF-208ENST00000437607 RGL2O15211 777 aa15.87■□□□□ 0.13
PTPRF-208ENST00000437607 HTATSF1O43719 755 aaKnown RBP15.87■□□□□ 0.13
PTPRF-208ENST00000437607 HSPA1AP0DMV8 641 aaKnown RBP15.87■□□□□ 0.13
PTPRF-208ENST00000437607 HSPA1BP0DMV9 641 aaKnown RBP15.87■□□□□ 0.13
PTPRF-208ENST00000437607 NPR1P16066 1061 aa15.87■□□□□ 0.13
PTPRF-208ENST00000437607 RUNDC1Q96C34 613 aa15.87■□□□□ 0.13
PTPRF-208ENST00000437607 MIS18AQ9NYP9 233 aa15.87■□□□□ 0.13
PTPRF-208ENST00000437607 TAF7Q15545 349 aaPredicted RBP15.86■□□□□ 0.13
PTPRF-208ENST00000437607 CCDC93Q567U6 631 aa15.86■□□□□ 0.13
PTPRF-208ENST00000437607 COL4A5P29400 1685 aa15.86■□□□□ 0.13
PTPRF-208ENST00000437607 LTBP1Q14766 1721 aa15.85■□□□□ 0.13
PTPRF-208ENST00000437607 TRPM7Q96QT4 1865 aa15.85■□□□□ 0.13
PTPRF-208ENST00000437607 FAM177BA6PVY3 158 aa15.85■□□□□ 0.13
PTPRF-208ENST00000437607 FKBP4Q02790 459 aaKnown RBP eCLIP15.85■□□□□ 0.131e-7■■■■■ 44.7
PTPRF-208ENST00000437607 TPTE2Q6XPS3 522 aa15.85■□□□□ 0.13
PTPRF-208ENST00000437607 L3MBTL3Q96JM7 780 aaPredicted RBP15.85■□□□□ 0.13
PTPRF-208ENST00000437607 ZNF541Q9H0D2 1346 aa15.85■□□□□ 0.13
PTPRF-208ENST00000437607 ABCC12Q96J65 1359 aa15.85■□□□□ 0.13
PTPRF-208ENST00000437607 TAF1P21675 1872 aa15.84■□□□□ 0.13
PTPRF-208ENST00000437607 ZNF277Q9NRM2 450 aaPredicted RBP15.84■□□□□ 0.13
PTPRF-208ENST00000437607 CREBZFQ9NS37 354 aa15.84■□□□□ 0.13
PTPRF-208ENST00000437607 ZBED9Q6R2W3 1325 aa15.84■□□□□ 0.13
PTPRF-208ENST00000437607 PASKQ96RG2 1323 aa15.84■□□□□ 0.13
PTPRF-208ENST00000437607 TAF1DQ9H5J8 278 aaPredicted RBP15.83■□□□□ 0.12
PTPRF-208ENST00000437607 TNS4Q8IZW8 715 aa15.82■□□□□ 0.12
PTPRF-208ENST00000437607 PLEKHF1Q96S99 279 aa15.82■□□□□ 0.12
PTPRF-208ENST00000437607 MKRN1Q9UHC7 482 aaKnown RBP15.82■□□□□ 0.12
PTPRF-208ENST00000437607 IQCA1LA6NCM1 817 aa15.81■□□□□ 0.12
PTPRF-208ENST00000437607 CRY2Q49AN0 593 aa15.81■□□□□ 0.12
PTPRF-208ENST00000437607 RIC1Q4ADV7 1423 aa15.81■□□□□ 0.12
PTPRF-208ENST00000437607 TTLL7Q6ZT98 887 aa15.81■□□□□ 0.12
PTPRF-208ENST00000437607 LDHDQ86WU2 507 aa15.81■□□□□ 0.12
PTPRF-208ENST00000437607 NUTM1Q86Y26 1132 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms