RNA–Protein interactions for RNA: ENST00000421459.2

VIM-202, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 753 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-202ENST00000421459 DPY19L2Q6NUT2 758 aa10.86□□□□□ -0.67
VIM-202ENST00000421459 NBPF10Q6P3W6 841 aaKnown RBP10.86□□□□□ -0.67
VIM-202ENST00000421459 NBPF15Q8N660 670 aa10.86□□□□□ -0.67
VIM-202ENST00000421459 ANKRD31Q8N7Z5 1873 aa10.86□□□□□ -0.67
VIM-202ENST00000421459 NPC1L1Q9UHC9 1359 aa10.86□□□□□ -0.67
VIM-202ENST00000421459 COL11A2P13942 1736 aaPredicted RBP10.85□□□□□ -0.67
VIM-202ENST00000421459 HSPA1AP0DMV8 641 aaKnown RBP10.85□□□□□ -0.67
VIM-202ENST00000421459 HSPA1BP0DMV9 641 aaKnown RBP10.85□□□□□ -0.67
VIM-202ENST00000421459 PPP2R1AP30153 589 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 ST5P78524 1137 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 HLFQ16534 295 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 STYK1Q6J9G0 422 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 NPM2Q86SE8 214 aaKnown RBP10.85□□□□□ -0.67
VIM-202ENST00000421459 NBPF5PQ86XG9 351 aaPredicted RBP10.85□□□□□ -0.67
VIM-202ENST00000421459 C7orf43Q8WVR3 580 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 MASTLQ96GX5 879 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 TAOK3Q9H2K8 898 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 DLEC1Q9Y238 1755 aa10.85□□□□□ -0.67
VIM-202ENST00000421459 SNRPA1P09661 255 aaKnown RBP10.84□□□□□ -0.67
VIM-202ENST00000421459 SLC51AQ86UW1 340 aa10.84□□□□□ -0.67
VIM-202ENST00000421459 NGEFQ8N5V2 710 aa10.84□□□□□ -0.67
VIM-202ENST00000421459 CNKSR1Q969H4 720 aa10.84□□□□□ -0.67
VIM-202ENST00000421459 CFAP53Q96M91 514 aa10.84□□□□□ -0.67
VIM-202ENST00000421459 ZNF277Q9NRM2 450 aaPredicted RBP10.84□□□□□ -0.67
VIM-202ENST00000421459 MKRN1Q9UHC7 482 aaKnown RBP10.84□□□□□ -0.67
VIM-202ENST00000421459 SCN7AQ01118 1682 aa10.84□□□□□ -0.67
VIM-202ENST00000421459 SIPA1L3O60292 1781 aaPredicted RBP10.84□□□□□ -0.67
VIM-202ENST00000421459 TIAM2Q8IVF5 1701 aa10.84□□□□□ -0.67
VIM-202ENST00000421459 CHADLQ6NUI6 762 aa10.83□□□□□ -0.68
VIM-202ENST00000421459 TNS4Q8IZW8 715 aa10.83□□□□□ -0.68
VIM-202ENST00000421459 RTF1Q92541 710 aaKnown RBP10.83□□□□□ -0.68
VIM-202ENST00000421459 PDZRN3Q9UPQ7 1066 aa10.83□□□□□ -0.68
VIM-202ENST00000421459 NIP7Q9Y221 180 aaKnown RBP eCLIP10.83□□□□□ -0.68
VIM-202ENST00000421459 SLX4Q8IY92 1834 aa10.82□□□□□ -0.68
VIM-202ENST00000421459 NUDCQ9Y266 331 aa10.82□□□□□ -0.68
VIM-202ENST00000421459 ZNF541Q9H0D2 1346 aa10.82□□□□□ -0.68
VIM-202ENST00000421459 LTBP3Q9NS15 1303 aa10.82□□□□□ -0.68
VIM-202ENST00000421459 KLRG2A4D1S0 409 aaPredicted RBP10.81□□□□□ -0.68
VIM-202ENST00000421459 NPR1P16066 1061 aa10.81□□□□□ -0.68
VIM-202ENST00000421459 CLEC4GQ6UXB4 293 aa10.81□□□□□ -0.68
VIM-202ENST00000421459 NUTM1Q86Y26 1132 aa10.81□□□□□ -0.68
VIM-202ENST00000421459 THUMPD2Q9BTF0 503 aaKnown RBP10.81□□□□□ -0.68
VIM-202ENST00000421459 CCDC88AQ3V6T2 1871 aa10.81□□□□□ -0.68
VIM-202ENST00000421459 TAF7Q15545 349 aaPredicted RBP10.8□□□□□ -0.68
VIM-202ENST00000421459 CCDC93Q567U6 631 aa10.8□□□□□ -0.68
VIM-202ENST00000421459 TPTE2Q6XPS3 522 aa10.8□□□□□ -0.68
VIM-202ENST00000421459 TTLL7Q6ZT98 887 aa10.8□□□□□ -0.68
VIM-202ENST00000421459 TAF1DQ9H5J8 278 aaPredicted RBP10.8□□□□□ -0.68
VIM-202ENST00000421459 ZNF652Q9Y2D9 606 aa10.8□□□□□ -0.68
VIM-202ENST00000421459 RRP7AQ9Y3A4 280 aaKnown RBP10.8□□□□□ -0.68
VIM-202ENST00000421459 FER1L6Q2WGJ9 1857 aa10.79□□□□□ -0.68
VIM-202ENST00000421459 FKBP4Q02790 459 aaKnown RBP eCLIP10.79□□□□□ -0.68
VIM-202ENST00000421459 EAPPQ56P03 285 aaPredicted RBP10.79□□□□□ -0.68
VIM-202ENST00000421459 SYNE4Q8N205 404 aa10.79□□□□□ -0.68
VIM-202ENST00000421459 CREBZFQ9NS37 354 aa10.79□□□□□ -0.68
VIM-202ENST00000421459 ABCC12Q96J65 1359 aa10.78□□□□□ -0.68
VIM-202ENST00000421459 BCORQ6W2J9 1755 aa10.78□□□□□ -0.68
VIM-202ENST00000421459 TCERG1O14776 1098 aaKnown RBP10.78□□□□□ -0.68
VIM-202ENST00000421459 HTATSF1O43719 755 aaKnown RBP10.78□□□□□ -0.68
VIM-202ENST00000421459 MYL6BP14649 208 aa10.78□□□□□ -0.68
VIM-202ENST00000421459 GPTP24298 496 aa10.78□□□□□ -0.68
VIM-202ENST00000421459 GTF2E1P29083 439 aaPredicted RBP10.78□□□□□ -0.68
VIM-202ENST00000421459 SOGA3Q5TF21 947 aa10.78□□□□□ -0.68
VIM-202ENST00000421459 ITGBL1O95965 494 aaPredicted RBP10.77□□□□□ -0.69
VIM-202ENST00000421459 EIF4A1P60842 406 aaKnown RBP10.77□□□□□ -0.69
VIM-202ENST00000421459 FMR1Q06787 632 aaKnown RBP eCLIP10.77□□□□□ -0.69
VIM-202ENST00000421459 MAP1SQ66K74 1059 aaPredicted RBP10.77□□□□□ -0.69
VIM-202ENST00000421459 C3orf67Q6ZVT6 689 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 LDHDQ86WU2 507 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 L3MBTL3Q96JM7 780 aaPredicted RBP10.77□□□□□ -0.69
VIM-202ENST00000421459 PLEKHF1Q96S99 279 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 ZBTB3Q9H5J0 574 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 CLEC11AQ9Y240 323 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 RNF123Q5XPI4 1314 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 PASKQ96RG2 1323 aa10.77□□□□□ -0.69
VIM-202ENST00000421459 IQCA1LA6NCM1 817 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 FOXN1O15353 648 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 ALDH1B1P30837 517 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 IARSP41252 1262 aaKnown RBP10.76□□□□□ -0.69
VIM-202ENST00000421459 VEGFBP49765 207 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 SUSD4Q5VX71 490 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 RTKN2Q8IZC4 609 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 HACL1Q9UJ83 578 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 UBN2Q6ZU65 1347 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 CACNA1SQ13698 1873 aa10.76□□□□□ -0.69
VIM-202ENST00000421459 FZD9O00144 591 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 EPHX2P34913 555 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 ZNF428Q96B54 188 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 GJA3Q9Y6H8 435 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 MAP3K15Q6ZN16 1313 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 COL4A5P29400 1685 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 CNTNAP1P78357 1384 aa10.75□□□□□ -0.69
VIM-202ENST00000421459 TMEM88BA6NKF7 163 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 ERVV-1B6SEH8 477 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 ANXA1P04083 346 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 NFE2L2Q16236 605 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 CRY2Q49AN0 593 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 CNTROBQ8N137 903 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 SNED1Q8TER0 1413 aa10.74□□□□□ -0.69
VIM-202ENST00000421459 DICER1Q9UPY3 1922 aaKnown RBP10.74□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms