RNA–Protein interactions for RNA: ENST00000416417.5

USP4-204, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 2 BASIC

Gene USP4, Length 1,536 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-204ENST00000416417 NBPF5PQ86XG9 351 aaPredicted RBP15.36■□□□□ 0.05
USP4-204ENST00000416417 PRPF40BQ6NWY9 871 aaKnown RBP15.35■□□□□ 0.05
USP4-204ENST00000416417 DNAJC5GQ8N7S2 189 aa15.35■□□□□ 0.05
USP4-204ENST00000416417 NIP7Q9Y221 180 aaKnown RBP eCLIP15.35■□□□□ 0.05
USP4-204ENST00000416417 GLTPD2A6NH11 291 aa15.34■□□□□ 0.05
USP4-204ENST00000416417 SRGNP10124 158 aa15.34■□□□□ 0.05
USP4-204ENST00000416417 NFE2L2Q16236 605 aa15.34■□□□□ 0.05
USP4-204ENST00000416417 TIAM2Q8IVF5 1701 aa15.34■□□□□ 0.05
USP4-204ENST00000416417 NEFMP07197 916 aa15.33■□□□□ 0.05
USP4-204ENST00000416417 OLFM4Q6UX06 510 aa15.33■□□□□ 0.05
USP4-204ENST00000416417 RRP7AQ9Y3A4 280 aaKnown RBP15.33■□□□□ 0.05
USP4-204ENST00000416417 SLX4Q8IY92 1834 aa15.33■□□□□ 0.05
USP4-204ENST00000416417 TNRC6CQ9HCJ0 1690 aaKnown RBP15.33■□□□□ 0.04
USP4-204ENST00000416417 DLG5Q8TDM6 1919 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 CCDC88AQ3V6T2 1871 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 EIF4A1P60842 406 aaKnown RBP15.33■□□□□ 0.04
USP4-204ENST00000416417 ERFEQ4G0M1 354 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 STYK1Q6J9G0 422 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 CLEC4GQ6UXB4 293 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 MASTLQ96GX5 879 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 ZNF652Q9Y2D9 606 aa15.33■□□□□ 0.04
USP4-204ENST00000416417 CACNA1SQ13698 1873 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 POTECB2RU33 542 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 MYL6BP14649 208 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 FSTL1Q12841 308 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 TTLL7Q6ZT98 887 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 CNKSR1Q969H4 720 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 PDZRN3Q9UPQ7 1066 aa15.32■□□□□ 0.04
USP4-204ENST00000416417 MAPK8IP3Q9UPT6 1336 aa15.31■□□□□ 0.04
USP4-204ENST00000416417 ZC3H4Q9UPT8 1303 aaKnown RBP15.31■□□□□ 0.04
USP4-204ENST00000416417 VEGFAP15692 232 aaPredicted RBP15.31■□□□□ 0.04
USP4-204ENST00000416417 TAOK3Q9H2K8 898 aa15.31■□□□□ 0.04
USP4-204ENST00000416417 WDR90Q96KV7 1748 aa15.31■□□□□ 0.04
USP4-204ENST00000416417 NUTM1Q86Y26 1132 aa15.3■□□□□ 0.04
USP4-204ENST00000416417 KDM3BQ7LBC6 1761 aa15.3■□□□□ 0.04
USP4-204ENST00000416417 DDNO94850 711 aaPredicted RBP15.29■□□□□ 0.04
USP4-204ENST00000416417 DDX10Q13206 875 aaKnown RBP15.29■□□□□ 0.04
USP4-204ENST00000416417 TPTE2Q6XPS3 522 aa15.29■□□□□ 0.04
USP4-204ENST00000416417 SMC1BQ8NDV3 1235 aa15.29■□□□□ 0.04
USP4-204ENST00000416417 PNISRQ8TF01 805 aaKnown RBP15.29■□□□□ 0.04
USP4-204ENST00000416417 ZBTB3Q9H5J0 574 aa15.29■□□□□ 0.04
USP4-204ENST00000416417 FER1L6Q2WGJ9 1857 aa15.29■□□□□ 0.04
USP4-204ENST00000416417 LAMB4A4D0S4 1761 aa15.28■□□□□ 0.04
USP4-204ENST00000416417 NPR1P16066 1061 aa15.28■□□□□ 0.04
USP4-204ENST00000416417 GPTP24298 496 aa15.28■□□□□ 0.04
USP4-204ENST00000416417 SLC51AQ86UW1 340 aa15.28■□□□□ 0.04
USP4-204ENST00000416417 C7orf43Q8WVR3 580 aa15.28■□□□□ 0.04
USP4-204ENST00000416417 ABCC12Q96J65 1359 aa15.28■□□□□ 0.04
USP4-204ENST00000416417 GTF2E1P29083 439 aaPredicted RBP15.27■□□□□ 0.04
USP4-204ENST00000416417 RIPK4P57078 832 aa15.27■□□□□ 0.04
USP4-204ENST00000416417 IFFO2Q5TF58 517 aa15.27■□□□□ 0.04
USP4-204ENST00000416417 DPY19L2Q6NUT2 758 aa15.27■□□□□ 0.04
USP4-204ENST00000416417 CCDC146Q8IYE0 955 aa15.27■□□□□ 0.04
USP4-204ENST00000416417 ZNF277Q9NRM2 450 aaPredicted RBP15.27■□□□□ 0.04
USP4-204ENST00000416417 ANXA1P04083 346 aa15.27■□□□□ 0.03
USP4-204ENST00000416417 POTEIP0CG38 1075 aa15.27■□□□□ 0.03
USP4-204ENST00000416417 POTEJP0CG39 1038 aa15.27■□□□□ 0.03
USP4-204ENST00000416417 NECTIN2Q92692 538 aa15.27■□□□□ 0.03
USP4-204ENST00000416417 TSPYL4Q9UJ04 414 aa15.27■□□□□ 0.03
USP4-204ENST00000416417 MAP3K15Q6ZN16 1313 aa15.26■□□□□ 0.03
USP4-204ENST00000416417 LTBP3Q9NS15 1303 aa15.26■□□□□ 0.03
USP4-204ENST00000416417 KLRG2A4D1S0 409 aaPredicted RBP15.26■□□□□ 0.03
USP4-204ENST00000416417 EIF2S2P20042 333 aaKnown RBP15.26■□□□□ 0.03
USP4-204ENST00000416417 NEUROD2Q15784 382 aa15.26■□□□□ 0.03
USP4-204ENST00000416417 CCDC93Q567U6 631 aa15.26■□□□□ 0.03
USP4-204ENST00000416417 KIF6Q6ZMV9 814 aa15.26■□□□□ 0.03
USP4-204ENST00000416417 KLRG1Q96E93 195 aa15.26■□□□□ 0.03
USP4-204ENST00000416417 UBN2Q6ZU65 1347 aa15.25■□□□□ 0.03
USP4-204ENST00000416417 PROSER3Q2NL68 480 aa15.25■□□□□ 0.03
USP4-204ENST00000416417 SUSD4Q5VX71 490 aa15.25■□□□□ 0.03
USP4-204ENST00000416417 ARFGEF2Q9Y6D5 1785 aa15.25■□□□□ 0.03
USP4-204ENST00000416417 PNNQ9H307 717 aaKnown RBP15.24■□□□□ 0.03
USP4-204ENST00000416417 ERVV-1B6SEH8 477 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 TCERG1O14776 1098 aaKnown RBP15.23■□□□□ 0.03
USP4-204ENST00000416417 TMPOP42166 694 aaKnown RBP15.23■□□□□ 0.03
USP4-204ENST00000416417 FKBP4Q02790 459 aaKnown RBP eCLIP15.23■□□□□ 0.03
USP4-204ENST00000416417 RALBP1Q15311 655 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 KRT24Q2M2I5 525 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 SOGA3Q5TF21 947 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 C3orf67Q6ZVT6 689 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 ZNF428Q96B54 188 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 ZNF541Q9H0D2 1346 aa15.23■□□□□ 0.03
USP4-204ENST00000416417 DICER1Q9UPY3 1922 aaKnown RBP15.23■□□□□ 0.03
USP4-204ENST00000416417 RGL2O15211 777 aa15.22■□□□□ 0.03
USP4-204ENST00000416417 PDIA6Q15084 440 aa15.22■□□□□ 0.03
USP4-204ENST00000416417 SYNE4Q8N205 404 aa15.22■□□□□ 0.03
USP4-204ENST00000416417 NYXQ9GZU5 481 aa15.22■□□□□ 0.03
USP4-204ENST00000416417 LAS1LQ9Y4W2 734 aaKnown RBP15.22■□□□□ 0.03
USP4-204ENST00000416417 NUP98P52948 1817 aa15.22■□□□□ 0.03
USP4-204ENST00000416417 LRP10Q7Z4F1 713 aa15.21■□□□□ 0.03
USP4-204ENST00000416417 ZNF34Q8IZ26 560 aa15.21■□□□□ 0.03
USP4-204ENST00000416417 NTSR2O95665 410 aa15.2■□□□□ 0.02
USP4-204ENST00000416417 ALDH1B1P30837 517 aa15.2■□□□□ 0.02
USP4-204ENST00000416417 AIMP1Q12904 312 aaKnown RBP15.2■□□□□ 0.02
USP4-204ENST00000416417 CRY2Q49AN0 593 aa15.2■□□□□ 0.02
USP4-204ENST00000416417 GIGYF2Q6Y7W6 1299 aaKnown RBP15.2■□□□□ 0.02
USP4-204ENST00000416417 JMYQ8N9B5 988 aa15.2■□□□□ 0.02
USP4-204ENST00000416417 MYBBP1AQ9BQG0 1328 aaKnown RBP15.2■□□□□ 0.02
USP4-204ENST00000416417 IARSP41252 1262 aaKnown RBP15.19■□□□□ 0.02
USP4-204ENST00000416417 CHADLQ6NUI6 762 aa15.19■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 71.4 ms