RNA–Protein interactions for RNA: ENST00000409417.5

PDLIM2-207, Transcript of PDZ and LIM domain 2, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene PDLIM2, Length 1,487 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM2-207ENST00000409417 TBC1D9BQ66K14 1250 aa25.65■■□□□ 1.7
PDLIM2-207ENST00000409417 TTLL7Q6ZT98 887 aa25.65■■□□□ 1.7
PDLIM2-207ENST00000409417 SCN7AQ01118 1682 aa25.64■■□□□ 1.7
PDLIM2-207ENST00000409417 KIF6Q6ZMV9 814 aa25.64■■□□□ 1.69
PDLIM2-207ENST00000409417 BICDL1Q6ZP65 573 aa25.63■■□□□ 1.69
PDLIM2-207ENST00000409417 MAP3K15Q6ZN16 1313 aa25.63■■□□□ 1.69
PDLIM2-207ENST00000409417 TWISTNBQ3B726 338 aaPredicted RBP25.62■■□□□ 1.69
PDLIM2-207ENST00000409417 HLFQ16534 295 aa25.61■■□□□ 1.69
PDLIM2-207ENST00000409417 CCDC30Q5VVM6 783 aa25.61■■□□□ 1.69
PDLIM2-207ENST00000409417 SETDB2Q96T68 719 aa25.61■■□□□ 1.69
PDLIM2-207ENST00000409417 HYPKQ9NX55 129 aa25.61■■□□□ 1.69
PDLIM2-207ENST00000409417 COPS6Q7L5N1 327 aa25.6■■□□□ 1.69
PDLIM2-207ENST00000409417 XAGE3Q8WTP9 111 aa25.6■■□□□ 1.69
PDLIM2-207ENST00000409417 E9PSI1 815 aa25.6■■□□□ 1.69
PDLIM2-207ENST00000409417 SERPINB2P05120 415 aa25.6■■□□□ 1.69
PDLIM2-207ENST00000409417 EXOSC9Q06265 439 aaKnown RBP25.6■■□□□ 1.69
PDLIM2-207ENST00000409417 BCORQ6W2J9 1755 aa25.59■■□□□ 1.69
PDLIM2-207ENST00000409417 NLGN2Q8NFZ4 835 aa25.59■■□□□ 1.69
PDLIM2-207ENST00000409417 ZBTB3Q9H5J0 574 aa25.59■■□□□ 1.69
PDLIM2-207ENST00000409417 CARMIL3Q8ND23 1372 aa25.59■■□□□ 1.69
PDLIM2-207ENST00000409417 C10orf71Q711Q0 1435 aa25.58■■□□□ 1.69
PDLIM2-207ENST00000409417 AIMP1Q12904 312 aaKnown RBP25.58■■□□□ 1.69
PDLIM2-207ENST00000409417 SLFN5Q08AF3 891 aa25.57■■□□□ 1.68
PDLIM2-207ENST00000409417 VAMP4O75379 141 aa25.56■■□□□ 1.68
PDLIM2-207ENST00000409417 GIGYF2Q6Y7W6 1299 aaKnown RBP25.56■■□□□ 1.68
PDLIM2-207ENST00000409417 NIP7Q9Y221 180 aaKnown RBP eCLIP25.56■■□□□ 1.68
PDLIM2-207ENST00000409417 STK31Q9BXU1 1019 aa25.54■■□□□ 1.68
PDLIM2-207ENST00000409417 ATP10DQ9P241 1426 aa25.54■■□□□ 1.68
PDLIM2-207ENST00000409417 TGFB2P61812 414 aa25.53■■□□□ 1.68
PDLIM2-207ENST00000409417 CDCA7LQ96GN5 454 aa25.53■■□□□ 1.68
PDLIM2-207ENST00000409417 HNRNPUQ00839 825 aaKnown RBP eCLIP25.53■■□□□ 1.68
PDLIM2-207ENST00000409417 ANKRD13DQ6ZTN6 518 aa25.53■■□□□ 1.68
PDLIM2-207ENST00000409417 PLBD2Q8NHP8 589 aa25.53■■□□□ 1.68
PDLIM2-207ENST00000409417 NBPF5PQ86XG9 351 aaPredicted RBP25.52■■□□□ 1.68
PDLIM2-207ENST00000409417 CNBD1Q8NA66 436 aa25.52■■□□□ 1.68
PDLIM2-207ENST00000409417 PHAXQ9H814 394 aaKnown RBP25.52■■□□□ 1.68
PDLIM2-207ENST00000409417 NRXN2Q9P2S2 1712 aa25.51■■□□□ 1.67
PDLIM2-207ENST00000409417 PRR5LQ6MZQ0 368 aa25.51■■□□□ 1.67
PDLIM2-207ENST00000409417 ZNF34Q8IZ26 560 aa25.51■■□□□ 1.67
PDLIM2-207ENST00000409417 TRMT2AQ8IZ69 625 aaKnown RBP25.51■■□□□ 1.67
PDLIM2-207ENST00000409417 KIF13BQ9NQT8 1826 aa25.5■■□□□ 1.67
PDLIM2-207ENST00000409417 TCERG1O14776 1098 aaKnown RBP25.5■■□□□ 1.67
PDLIM2-207ENST00000409417 HSP90AB3PQ58FF7 597 aa25.5■■□□□ 1.67
PDLIM2-207ENST00000409417 GOLGB1Q14789 3259 aaKnown RBP25.5■■□□□ 1.67
PDLIM2-207ENST00000409417 NPHP1O15259 732 aa25.49■■□□□ 1.67
PDLIM2-207ENST00000409417 SLC4A2P04920 1241 aa25.49■■□□□ 1.67
PDLIM2-207ENST00000409417 TPTE2Q6XPS3 522 aa25.49■■□□□ 1.67
PDLIM2-207ENST00000409417 AFDNP55196 1824 aaKnown RBP25.49■■□□□ 1.67
PDLIM2-207ENST00000409417 NUP98P52948 1817 aa25.48■■□□□ 1.67
PDLIM2-207ENST00000409417 DCAF8L1A6NGE4 600 aa25.48■■□□□ 1.67
PDLIM2-207ENST00000409417 GPTP24298 496 aa25.48■■□□□ 1.67
PDLIM2-207ENST00000409417 PXDNLA1KZ92 1463 aa25.48■■□□□ 1.67
PDLIM2-207ENST00000409417 A0A0G2JLW4 131 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 TCIRG1Q13488 830 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 BRIP1Q9BX63 1249 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 UBN2Q6ZU65 1347 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 DPEP1P16444 411 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 ST5P78524 1137 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 PARP10Q53GL7 1025 aa25.47■■□□□ 1.67
PDLIM2-207ENST00000409417 DDX58O95786 925 aaKnown RBP25.46■■□□□ 1.67
PDLIM2-207ENST00000409417 NYXQ9GZU5 481 aa25.46■■□□□ 1.67
PDLIM2-207ENST00000409417 FAM177BA6PVY3 158 aa25.45■■□□□ 1.66
PDLIM2-207ENST00000409417 RIC3Q7Z5B4 369 aa25.45■■□□□ 1.66
PDLIM2-207ENST00000409417 CCDC24Q8N4L8 307 aa25.45■■□□□ 1.66
PDLIM2-207ENST00000409417 IBTKQ9P2D0 1353 aaPredicted RBP25.44■■□□□ 1.66
PDLIM2-207ENST00000409417 GPR162Q16538 588 aa25.44■■□□□ 1.66
PDLIM2-207ENST00000409417 SUSD4Q5VX71 490 aa25.44■■□□□ 1.66
PDLIM2-207ENST00000409417 KCNA3P22001 575 aa25.43■■□□□ 1.66
PDLIM2-207ENST00000409417 GTF2E1P29083 439 aaPredicted RBP25.43■■□□□ 1.66
PDLIM2-207ENST00000409417 PDE6BP35913 854 aa25.43■■□□□ 1.66
PDLIM2-207ENST00000409417 G2E3Q7L622 706 aa25.43■■□□□ 1.66
PDLIM2-207ENST00000409417 PPP1R42Q7Z4L9 355 aa25.43■■□□□ 1.66
PDLIM2-207ENST00000409417 UTRNP46939 3433 aa25.43■■□□□ 1.66
PDLIM2-207ENST00000409417 CHRNA5P30532 468 aa25.42■■□□□ 1.66
PDLIM2-207ENST00000409417 FLIIQ13045 1269 aa25.42■■□□□ 1.66
PDLIM2-207ENST00000409417 NLRP10Q86W26 655 aa25.42■■□□□ 1.66
PDLIM2-207ENST00000409417 KSR2Q6VAB6 950 aa25.41■■□□□ 1.66
PDLIM2-207ENST00000409417 PELP1Q8IZL8 1130 aaKnown RBP25.41■■□□□ 1.66
PDLIM2-207ENST00000409417 ZNF428Q96B54 188 aa25.41■■□□□ 1.66
PDLIM2-207ENST00000409417 PDZRN3Q9UPQ7 1066 aa25.41■■□□□ 1.66
PDLIM2-207ENST00000409417 KIAA1551Q9HCM1 1747 aa25.41■■□□□ 1.66
PDLIM2-207ENST00000409417 NTSR2O95665 410 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 TRIM28Q13263 835 aaKnown RBP25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 ISCA1Q9BUE6 129 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 UTP14AQ9BVJ6 771 aaKnown RBP25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 ZBED9Q6R2W3 1325 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 PI4KAP2A4QPH2 592 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 H0YIN7 160 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 CT47B1P0C2W7 299 aaPredicted RBP25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 YBX3P16989 372 aaKnown RBP eCLIP25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 NUTM1Q86Y26 1132 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 C2CD5Q86YS7 1000 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 PI4KAP1Q8N8J0 262 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 PIM2Q9P1W9 311 aa25.4■■□□□ 1.66
PDLIM2-207ENST00000409417 ATP5J2-PTCD1G3V325 749 aa25.39■■□□□ 1.65
PDLIM2-207ENST00000409417 METTL22Q9BUU2 404 aaPredicted RBP25.39■■□□□ 1.65
PDLIM2-207ENST00000409417 WWC3Q9ULE0 1092 aa25.39■■□□□ 1.65
PDLIM2-207ENST00000409417 MAP3K2Q9Y2U5 619 aa25.39■■□□□ 1.65
PDLIM2-207ENST00000409417 N4BP2Q86UW6 1770 aaPredicted RBP25.38■■□□□ 1.65
PDLIM2-207ENST00000409417 CACNA1FO60840 1977 aa25.38■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 292.5 ms