RNA–Protein interactions for RNA: ENST00000404424.5

CLIP4-204, Transcript of CAP-Gly domain containing linker protein family member 4, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLIP4, Length 2,480 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP4-204ENST00000404424 TM6SF1Q9BZW5 370 aa12.92□□□□□ -0.34
CLIP4-204ENST00000404424 DIAPH3Q9NSV4 1193 aa12.92□□□□□ -0.34
CLIP4-204ENST00000404424 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.92□□□□□ -0.34
CLIP4-204ENST00000404424 STX6O43752 255 aa12.91□□□□□ -0.34
CLIP4-204ENST00000404424 CSPP1Q1MSJ5 1256 aa12.91□□□□□ -0.34
CLIP4-204ENST00000404424 RASEFQ8IZ41 740 aa12.91□□□□□ -0.34
CLIP4-204ENST00000404424 ECHDC1Q9NTX5 307 aa12.91□□□□□ -0.34
CLIP4-204ENST00000404424 KCNB2Q92953 911 aa12.91□□□□□ -0.34
CLIP4-204ENST00000404424 ZSCAN31Q96LW9 406 aaPredicted RBP12.91□□□□□ -0.34
CLIP4-204ENST00000404424 C9orf78Q9NZ63 289 aaPredicted RBP12.91□□□□□ -0.34
CLIP4-204ENST00000404424 RNMTO43148 476 aaKnown RBP12.9□□□□□ -0.34
CLIP4-204ENST00000404424 KCNQ3O43525 872 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 GADD45BO75293 160 aaPredicted RBP12.9□□□□□ -0.34
CLIP4-204ENST00000404424 CCDC183Q5T5S1 534 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 VPS53Q5VIR6 699 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 KSR2Q6VAB6 950 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 RUFY3Q7L099 469 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 SH2B1Q9NRF2 756 aaPredicted RBP12.9□□□□□ -0.34
CLIP4-204ENST00000404424 SMC3Q9UQE7 1217 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 PDIA4P13667 645 aaKnown RBP12.9□□□□□ -0.34
CLIP4-204ENST00000404424 UBE2HP62256 183 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 C1orf141Q5JVX7 400 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 EVI5LQ96CN4 794 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 HEG1Q9ULI3 1381 aa12.9□□□□□ -0.34
CLIP4-204ENST00000404424 HIP1O00291 1037 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 IFIT2P09913 472 aaKnown RBP12.89□□□□□ -0.35
CLIP4-204ENST00000404424 SYT1P21579 422 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 PSME1Q06323 249 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 GLIPR1L2Q4G1C9 344 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 RNF214Q8ND24 703 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 GDPD2Q9HCC8 539 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 SPG7Q9UQ90 795 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 MAP3K2Q9Y2U5 619 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 GIGYF1O75420 1035 aaPredicted RBP12.89□□□□□ -0.35
CLIP4-204ENST00000404424 F13A1P00488 732 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 CASTP20810 708 aaKnown RBP12.89□□□□□ -0.35
CLIP4-204ENST00000404424 MPRIPQ6WCQ1 1025 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 HYPKQ9NX55 129 aa12.89□□□□□ -0.35
CLIP4-204ENST00000404424 CHD2O14647 1828 aaKnown RBP12.88□□□□□ -0.35
CLIP4-204ENST00000404424 ZSWIM6Q9HCJ5 1215 aa12.88□□□□□ -0.35
CLIP4-204ENST00000404424 ANXA1P04083 346 aa12.88□□□□□ -0.35
CLIP4-204ENST00000404424 FOXD4L6Q3SYB3 417 aaPredicted RBP12.88□□□□□ -0.35
CLIP4-204ENST00000404424 FOXD4L3Q6VB84 417 aaPredicted RBP12.88□□□□□ -0.35
CLIP4-204ENST00000404424 PDRG1Q9NUG6 133 aa12.88□□□□□ -0.35
CLIP4-204ENST00000404424 CYP46A1Q9Y6A2 500 aa12.88□□□□□ -0.35
CLIP4-204ENST00000404424 UTYO14607 1347 aa12.88□□□□□ -0.35
CLIP4-204ENST00000404424 DDX58O95786 925 aaKnown RBP12.87□□□□□ -0.35
CLIP4-204ENST00000404424 ZKSCAN1P17029 563 aaPredicted RBP12.87□□□□□ -0.35
CLIP4-204ENST00000404424 LINS1Q8NG48 757 aa12.87□□□□□ -0.35
CLIP4-204ENST00000404424 CNPY2Q9Y2B0 182 aa12.87□□□□□ -0.35
CLIP4-204ENST00000404424 LMTK3Q96Q04 1460 aa12.87□□□□□ -0.35
CLIP4-204ENST00000404424 NECTIN1Q15223 517 aa12.87□□□□□ -0.35
CLIP4-204ENST00000404424 CCDC171Q6TFL3 1326 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 TCHHQ07283 1943 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 PTH1RQ03431 593 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 ESCO1Q5FWF5 840 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 ARHGEF25Q86VW2 580 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 LRRC59Q96AG4 307 aaKnown RBP12.86□□□□□ -0.35
CLIP4-204ENST00000404424 JAKMIP1Q96N16 626 aaKnown RBP12.86□□□□□ -0.35
CLIP4-204ENST00000404424 SNRKQ9NRH2 765 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 GRM8O00222 908 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 PTMAP06454 111 aaKnown RBP12.86□□□□□ -0.35
CLIP4-204ENST00000404424 GJB2P29033 226 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 PRPF40BQ6NWY9 871 aaKnown RBP12.86□□□□□ -0.35
CLIP4-204ENST00000404424 ANKLE2Q86XL3 938 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 RGPD2P0DJD1 1756 aa12.86□□□□□ -0.35
CLIP4-204ENST00000404424 GCP02774 474 aa12.85□□□□□ -0.35
CLIP4-204ENST00000404424 PSMA5P28066 241 aa12.85□□□□□ -0.35
CLIP4-204ENST00000404424 XPCQ01831 940 aaPredicted RBP12.85□□□□□ -0.35
CLIP4-204ENST00000404424 G3BP1Q13283 466 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLIP4-204ENST00000404424 AACSQ86V21 672 aa12.85□□□□□ -0.35
CLIP4-204ENST00000404424 R3HCC1Q9Y3T6 440 aaKnown RBP12.85□□□□□ -0.35
CLIP4-204ENST00000404424 ZBTB7CA1YPR0 619 aa12.85□□□□□ -0.35
CLIP4-204ENST00000404424 CCDC83Q8IWF9 413 aa12.85□□□□□ -0.35
CLIP4-204ENST00000404424 MAP4K1Q92918 833 aa12.85□□□□□ -0.35
CLIP4-204ENST00000404424 DDX21Q9NR30 783 aaKnown RBP eCLIP12.85□□□□□ -0.35
CLIP4-204ENST00000404424 PA2G4Q9UQ80 394 aaKnown RBP12.85□□□□□ -0.35
CLIP4-204ENST00000404424 SETD1BQ9UPS6 1966 aaKnown RBP12.85□□□□□ -0.35
CLIP4-204ENST00000404424 SLIT3O75094 1523 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 LARGE1O95461 756 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 PROSER3Q2NL68 480 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 ADCK5Q3MIX3 580 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 PDCL3Q9H2J4 239 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 MTMR6Q9Y217 621 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 PXDNQ92626 1479 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 CWF19L2Q2TBE0 894 aaKnown RBP12.84□□□□□ -0.35
CLIP4-204ENST00000404424 SUCLG2Q96I99 432 aa12.84□□□□□ -0.35
CLIP4-204ENST00000404424 CPA1P15085 419 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 KIAA2012Q0VF49 1180 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 ANKRD1Q15327 319 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 RNF20Q5VTR2 975 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 CREB3L3Q68CJ9 461 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 ANKRD24Q8TF21 1146 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 LARP6Q9BRS8 491 aaKnown RBP12.83□□□□□ -0.36
CLIP4-204ENST00000404424 ALDH8A1Q9H2A2 487 aaPredicted RBP12.83□□□□□ -0.36
CLIP4-204ENST00000404424 RBM8AQ9Y5S9 174 aaKnown RBP12.83□□□□□ -0.36
CLIP4-204ENST00000404424 FIBPO43427 364 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 SASH1O94885 1247 aa12.83□□□□□ -0.36
CLIP4-204ENST00000404424 BICC1Q9H694 974 aaKnown RBP12.83□□□□□ -0.36
CLIP4-204ENST00000404424 CAMTA1Q9Y6Y1 1673 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 63.7 ms