RNA–Protein interactions for RNA: ENST00000397643.3

CUX2-202, Transcript of cut like homeobox 2, humanhuman

TSL 1 (best)

Gene CUX2, Length 890 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX2-202ENST00000397643 CREBZFQ9NS37 354 aa21.74■■□□□ 1.07
CUX2-202ENST00000397643 CNKSR1Q969H4 720 aa21.73■■□□□ 1.07
CUX2-202ENST00000397643 FMNL2Q96PY5 1086 aa21.73■■□□□ 1.07
CUX2-202ENST00000397643 SETDB2Q96T68 719 aa21.73■■□□□ 1.07
CUX2-202ENST00000397643 KCNQ3O43525 872 aa21.72■■□□□ 1.07
CUX2-202ENST00000397643 C7orf43Q8WVR3 580 aa21.71■■□□□ 1.07
CUX2-202ENST00000397643 MKRN1Q9UHC7 482 aaKnown RBP21.71■■□□□ 1.07
CUX2-202ENST00000397643 NPC1L1Q9UHC9 1359 aa21.71■■□□□ 1.07
CUX2-202ENST00000397643 U2SURPO15042 1029 aaKnown RBP21.7■■□□□ 1.06
CUX2-202ENST00000397643 MASTLQ96GX5 879 aa21.7■■□□□ 1.06
CUX2-202ENST00000397643 PASKQ96RG2 1323 aa21.7■■□□□ 1.06
CUX2-202ENST00000397643 ST5P78524 1137 aa21.69■■□□□ 1.06
CUX2-202ENST00000397643 SOGA3Q5TF21 947 aa21.69■■□□□ 1.06
CUX2-202ENST00000397643 DZIP3Q86Y13 1208 aaKnown RBP21.69■■□□□ 1.06
CUX2-202ENST00000397643 L3MBTL3Q96JM7 780 aaPredicted RBP21.69■■□□□ 1.06
CUX2-202ENST00000397643 SCN4AP35499 1836 aa21.69■■□□□ 1.06
CUX2-202ENST00000397643 PIP4K2AP48426 406 aaPredicted RBP21.68■■□□□ 1.06
CUX2-202ENST00000397643 PHACTR3Q96KR7 559 aa21.68■■□□□ 1.06
CUX2-202ENST00000397643 USP16Q9Y5T5 823 aa21.68■■□□□ 1.06
CUX2-202ENST00000397643 CNTNAP1P78357 1384 aa21.68■■□□□ 1.06
CUX2-202ENST00000397643 PRAMEF22A3QJZ6 481 aa21.67■■□□□ 1.06
CUX2-202ENST00000397643 ADAMTSL1Q8N6G6 1762 aa21.66■■□□□ 1.06
CUX2-202ENST00000397643 BTBD11A6QL63 1104 aa21.66■■□□□ 1.06
CUX2-202ENST00000397643 LDHDQ86WU2 507 aa21.66■■□□□ 1.06
CUX2-202ENST00000397643 TAF1DQ9H5J8 278 aaPredicted RBP21.66■■□□□ 1.06
CUX2-202ENST00000397643 KLRG2A4D1S0 409 aaPredicted RBP21.65■■□□□ 1.06
CUX2-202ENST00000397643 NPHP1O15259 732 aa21.65■■□□□ 1.06
CUX2-202ENST00000397643 CLEC4GQ6UXB4 293 aa21.65■■□□□ 1.06
CUX2-202ENST00000397643 RSPH6AQ9H0K4 717 aa21.65■■□□□ 1.06
CUX2-202ENST00000397643 ZNF541Q9H0D2 1346 aa21.64■■□□□ 1.05
CUX2-202ENST00000397643 IQCA1LA6NCM1 817 aa21.64■■□□□ 1.05
CUX2-202ENST00000397643 FOXN1O15353 648 aa21.64■■□□□ 1.05
CUX2-202ENST00000397643 CCDC93Q567U6 631 aa21.64■■□□□ 1.05
CUX2-202ENST00000397643 NPM2Q86SE8 214 aaKnown RBP21.64■■□□□ 1.05
CUX2-202ENST00000397643 NBPF5PQ86XG9 351 aaPredicted RBP21.64■■□□□ 1.05
CUX2-202ENST00000397643 NPR1P16066 1061 aa21.63■■□□□ 1.05
CUX2-202ENST00000397643 PRKAR2BP31323 418 aa21.63■■□□□ 1.05
CUX2-202ENST00000397643 ZEB1P37275 1124 aaPredicted RBP21.63■■□□□ 1.05
CUX2-202ENST00000397643 OLFM4Q6UX06 510 aa21.63■■□□□ 1.05
CUX2-202ENST00000397643 SNED1Q8TER0 1413 aa21.63■■□□□ 1.05
CUX2-202ENST00000397643 ITGBL1O95965 494 aaPredicted RBP21.62■■□□□ 1.05
CUX2-202ENST00000397643 FKBP4Q02790 459 aaKnown RBP eCLIP21.62■■□□□ 1.05
CUX2-202ENST00000397643 NBPF26B4DH59 902 aa21.61■■□□□ 1.05
CUX2-202ENST00000397643 NBPF10Q6P3W6 841 aaKnown RBP21.61■■□□□ 1.05
CUX2-202ENST00000397643 NBPF15Q8N660 670 aa21.61■■□□□ 1.05
CUX2-202ENST00000397643 ZNF277Q9NRM2 450 aaPredicted RBP21.61■■□□□ 1.05
CUX2-202ENST00000397643 RGL2O15211 777 aa21.6■■□□□ 1.05
CUX2-202ENST00000397643 CNGB1Q14028 1251 aaPredicted RBP21.6■■□□□ 1.05
CUX2-202ENST00000397643 ZNF652Q9Y2D9 606 aa21.6■■□□□ 1.05
CUX2-202ENST00000397643 SNRPA1P09661 255 aaKnown RBP21.59■■□□□ 1.05
CUX2-202ENST00000397643 VEGFBP49765 207 aa21.59■■□□□ 1.05
CUX2-202ENST00000397643 TMEM88BA6NKF7 163 aa21.58■■□□□ 1.05
CUX2-202ENST00000397643 MCM10Q7L590 875 aa21.58■■□□□ 1.05
CUX2-202ENST00000397643 PRDM10Q9NQV6 1147 aa21.58■■□□□ 1.05
CUX2-202ENST00000397643 NIP7Q9Y221 180 aaKnown RBP eCLIP21.58■■□□□ 1.05
CUX2-202ENST00000397643 TPTE2Q6XPS3 522 aa21.57■■□□□ 1.04
CUX2-202ENST00000397643 HACL1Q9UJ83 578 aa21.57■■□□□ 1.04
CUX2-202ENST00000397643 FZD9O00144 591 aa21.56■■□□□ 1.04
CUX2-202ENST00000397643 EPHX2P34913 555 aa21.56■■□□□ 1.04
CUX2-202ENST00000397643 EAPPQ56P03 285 aaPredicted RBP21.56■■□□□ 1.04
CUX2-202ENST00000397643 COL4A5P29400 1685 aa21.56■■□□□ 1.04
CUX2-202ENST00000397643 LAMB4A4D0S4 1761 aa21.56■■□□□ 1.04
CUX2-202ENST00000397643 RNF123Q5XPI4 1314 aa21.55■■□□□ 1.04
CUX2-202ENST00000397643 IARSP41252 1262 aaKnown RBP21.55■■□□□ 1.04
CUX2-202ENST00000397643 HLFQ16534 295 aa21.55■■□□□ 1.04
CUX2-202ENST00000397643 RTKN2Q8IZC4 609 aa21.55■■□□□ 1.04
CUX2-202ENST00000397643 ABCC12Q96J65 1359 aa21.55■■□□□ 1.04
CUX2-202ENST00000397643 DCTN1Q14203 1278 aa21.54■■□□□ 1.04
CUX2-202ENST00000397643 WBP1LQ9NX94 342 aa21.54■■□□□ 1.04
CUX2-202ENST00000397643 LTBP1Q14766 1721 aa21.53■■□□□ 1.04
CUX2-202ENST00000397643 FAM177BA6PVY3 158 aa21.53■■□□□ 1.04
CUX2-202ENST00000397643 CTCFP49711 727 aaPredicted RBP21.53■■□□□ 1.04
CUX2-202ENST00000397643 CRY2Q49AN0 593 aa21.53■■□□□ 1.04
CUX2-202ENST00000397643 SYNE4Q8N205 404 aa21.53■■□□□ 1.04
CUX2-202ENST00000397643 RASSF10A6NK89 507 aa21.52■■□□□ 1.04
CUX2-202ENST00000397643 MAP1SQ66K74 1059 aaPredicted RBP21.52■■□□□ 1.04
CUX2-202ENST00000397643 RTF1Q92541 710 aaKnown RBP21.52■■□□□ 1.04
CUX2-202ENST00000397643 CFAP53Q96M91 514 aa21.52■■□□□ 1.04
CUX2-202ENST00000397643 ALDH1B1P30837 517 aa21.51■■□□□ 1.03
CUX2-202ENST00000397643 PNMA8AQ86V59 439 aaPredicted RBP21.51■■□□□ 1.03
CUX2-202ENST00000397643 CNTROBQ8N137 903 aa21.51■■□□□ 1.03
CUX2-202ENST00000397643 GPC2Q8N158 579 aa21.51■■□□□ 1.03
CUX2-202ENST00000397643 AIDAQ96BJ3 306 aa21.51■■□□□ 1.03
CUX2-202ENST00000397643 PSMD1Q99460 953 aa21.51■■□□□ 1.03
CUX2-202ENST00000397643 CLEC11AQ9Y240 323 aa21.51■■□□□ 1.03
CUX2-202ENST00000397643 U2AF1L5P0DN76 240 aaPredicted RBP21.5■■□□□ 1.03
CUX2-202ENST00000397643 U2AF1Q01081 240 aaKnown RBP eCLIP21.5■■□□□ 1.03
CUX2-202ENST00000397643 THSD7BQ9C0I4 1608 aa21.5■■□□□ 1.03
CUX2-202ENST00000397643 HTATSF1O43719 755 aaKnown RBP21.49■■□□□ 1.03
CUX2-202ENST00000397643 LBX1P52954 281 aa21.49■■□□□ 1.03
CUX2-202ENST00000397643 KDM3BQ7LBC6 1761 aa21.48■■□□□ 1.03
CUX2-202ENST00000397643 NUP98P52948 1817 aa21.48■■□□□ 1.03
CUX2-202ENST00000397643 RIC1Q4ADV7 1423 aa21.48■■□□□ 1.03
CUX2-202ENST00000397643 SLC51AQ86UW1 340 aa21.48■■□□□ 1.03
CUX2-202ENST00000397643 NUTM1Q86Y26 1132 aa21.48■■□□□ 1.03
CUX2-202ENST00000397643 NUDCQ9Y266 331 aa21.48■■□□□ 1.03
CUX2-202ENST00000397643 HSPA8P11142 646 aaKnown RBP21.47■■□□□ 1.03
CUX2-202ENST00000397643 PPP2R1AP30153 589 aa21.47■■□□□ 1.03
CUX2-202ENST00000397643 TAF7Q15545 349 aaPredicted RBP21.47■■□□□ 1.03
CUX2-202ENST00000397643 DEFB115Q30KQ5 88 aa21.47■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms