RNA–Protein interactions for RNA: ENST00000395066.7

CLK3-202, Transcript of CDC like kinase 3, humanhuman

TSL 1 (best) BASIC

Gene CLK3, Length 2,621 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-202ENST00000395066 PSME1Q06323 249 aa24.84■■□□□ 1.57
CLK3-202ENST00000395066 ADCK5Q3MIX3 580 aa24.84■■□□□ 1.57
CLK3-202ENST00000395066 TSPY26PQ9H489 355 aa24.84■■□□□ 1.57
CLK3-202ENST00000395066 C9orf78Q9NZ63 289 aaPredicted RBP24.84■■□□□ 1.57
CLK3-202ENST00000395066 CSPP1Q1MSJ5 1256 aa24.83■■□□□ 1.57
CLK3-202ENST00000395066 PXDNQ92626 1479 aa24.83■■□□□ 1.57
CLK3-202ENST00000395066 DIAPH3Q9NSV4 1193 aa24.83■■□□□ 1.57
CLK3-202ENST00000395066 LMOD2Q6P5Q4 547 aa24.82■■□□□ 1.56
CLK3-202ENST00000395066 COL9A3Q14050 684 aaPredicted RBP24.82■■□□□ 1.56
CLK3-202ENST00000395066 PRPF40BQ6NWY9 871 aaKnown RBP24.82■■□□□ 1.56
CLK3-202ENST00000395066 SYT1P21579 422 aa24.82■■□□□ 1.56
CLK3-202ENST00000395066 MED1Q15648 1581 aaPredicted RBP24.81■■□□□ 1.56
CLK3-202ENST00000395066 AIMP1Q12904 312 aaKnown RBP24.81■■□□□ 1.56
CLK3-202ENST00000395066 CCDC83Q8IWF9 413 aa24.81■■□□□ 1.56
CLK3-202ENST00000395066 AKAP4Q5JQC9 854 aa24.81■■□□□ 1.56
CLK3-202ENST00000395066 CLASRPQ8N2M8 674 aaKnown RBP24.81■■□□□ 1.56
CLK3-202ENST00000395066 LIMCH1Q9UPQ0 1083 aa24.81■■□□□ 1.56
CLK3-202ENST00000395066 NFAT5O94916 1531 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 KDM3BQ7LBC6 1761 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 UQCRHLA0A096LP55 91 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 FIBPO43427 364 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 GLRX3O76003 335 aaKnown RBP24.8■■□□□ 1.56
CLK3-202ENST00000395066 UQCRHP07919 91 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 JAKMIP1Q96N16 626 aaKnown RBP24.8■■□□□ 1.56
CLK3-202ENST00000395066 FER1L4A9Z1Z3 1794 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 FAM13BQ9NYF5 915 aa24.8■■□□□ 1.56
CLK3-202ENST00000395066 DBF4Q9UBU7 674 aaPredicted RBP24.8■■□□□ 1.56
CLK3-202ENST00000395066 ZSCAN22P10073 491 aaPredicted RBP24.79■■□□□ 1.56
CLK3-202ENST00000395066 RNMTO43148 476 aaKnown RBP24.79■■□□□ 1.56
CLK3-202ENST00000395066 STX6O43752 255 aa24.79■■□□□ 1.56
CLK3-202ENST00000395066 HOXB7P09629 217 aa24.78■■□□□ 1.56
CLK3-202ENST00000395066 AACSQ86V21 672 aa24.78■■□□□ 1.56
CLK3-202ENST00000395066 SMC3Q9UQE7 1217 aa24.78■■□□□ 1.56
CLK3-202ENST00000395066 IFIT2P09913 472 aaKnown RBP24.78■■□□□ 1.56
CLK3-202ENST00000395066 SYAP1Q96A49 352 aaPredicted RBP24.78■■□□□ 1.56
CLK3-202ENST00000395066 MAP7D2Q96T17 732 aa24.78■■□□□ 1.56
CLK3-202ENST00000395066 HYPKQ9NX55 129 aa24.78■■□□□ 1.56
CLK3-202ENST00000395066 GIGYF1O75420 1035 aaPredicted RBP24.77■■□□□ 1.56
CLK3-202ENST00000395066 PLEKHO1Q53GL0 409 aaPredicted RBP24.77■■□□□ 1.56
CLK3-202ENST00000395066 HSP90AB4PQ58FF6 505 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 USP54Q70EL1 1684 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 FAM227BQ96M60 508 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 SIL1Q9H173 461 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 ECHDC1Q9NTX5 307 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 C1orf141Q5JVX7 400 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 KLHDC4Q8TBB5 520 aa24.77■■□□□ 1.56
CLK3-202ENST00000395066 CCDC8Q9H0W5 538 aaPredicted RBP24.77■■□□□ 1.56
CLK3-202ENST00000395066 TTC41PQ6P2S7 1318 aa24.76■■□□□ 1.55
CLK3-202ENST00000395066 NECAB1Q8N987 351 aa24.76■■□□□ 1.55
CLK3-202ENST00000395066 TLR7Q9NYK1 1049 aaKnown RBP24.76■■□□□ 1.55
CLK3-202ENST00000395066 EPB41L2O43491 1005 aaKnown RBP24.76■■□□□ 1.55
CLK3-202ENST00000395066 SUCLG2Q96I99 432 aa24.76■■□□□ 1.55
CLK3-202ENST00000395066 ORAI2Q96SN7 254 aa24.76■■□□□ 1.55
CLK3-202ENST00000395066 KAZALD1Q96I82 304 aa24.75■■□□□ 1.55
CLK3-202ENST00000395066 USP42Q9H9J4 1324 aaKnown RBP24.75■■□□□ 1.55
CLK3-202ENST00000395066 PTMAP06454 111 aaKnown RBP24.75■■□□□ 1.55
CLK3-202ENST00000395066 GJB2P29033 226 aa24.75■■□□□ 1.55
CLK3-202ENST00000395066 TCEANC2Q96MN5 208 aa24.75■■□□□ 1.55
CLK3-202ENST00000395066 PDRG1Q9NUG6 133 aa24.75■■□□□ 1.55
CLK3-202ENST00000395066 F13A1P00488 732 aa24.74■■□□□ 1.55
CLK3-202ENST00000395066 ST3GAL1Q11201 340 aa24.74■■□□□ 1.55
CLK3-202ENST00000395066 KSR2Q6VAB6 950 aa24.74■■□□□ 1.55
CLK3-202ENST00000395066 MTX1Q13505 466 aa24.74■■□□□ 1.55
CLK3-202ENST00000395066 BICC1Q9H694 974 aaKnown RBP24.74■■□□□ 1.55
CLK3-202ENST00000395066 SASH1O94885 1247 aa24.73■■□□□ 1.55
CLK3-202ENST00000395066 GCP02774 474 aa24.73■■□□□ 1.55
CLK3-202ENST00000395066 DNM1Q05193 864 aaKnown RBP24.73■■□□□ 1.55
CLK3-202ENST00000395066 EAF2Q96CJ1 260 aaPredicted RBP24.73■■□□□ 1.55
CLK3-202ENST00000395066 USP25Q9UHP3 1055 aa24.73■■□□□ 1.55
CLK3-202ENST00000395066 AXIN2Q9Y2T1 843 aa24.73■■□□□ 1.55
CLK3-202ENST00000395066 ZSCAN21Q9Y5A6 473 aaPredicted RBP24.73■■□□□ 1.55
CLK3-202ENST00000395066 HCLS1P14317 486 aaPredicted RBP24.73■■□□□ 1.55
CLK3-202ENST00000395066 ZNF830Q96NB3 372 aaPredicted RBP24.73■■□□□ 1.55
CLK3-202ENST00000395066 SLC39A6Q13433 755 aa24.72■■□□□ 1.55
CLK3-202ENST00000395066 ANKRD24Q8TF21 1146 aa24.72■■□□□ 1.55
CLK3-202ENST00000395066 DYNC1I1O14576 645 aa24.72■■□□□ 1.55
CLK3-202ENST00000395066 SASS6Q6UVJ0 657 aa24.72■■□□□ 1.55
CLK3-202ENST00000395066 TAF6LQ9Y6J9 622 aa24.72■■□□□ 1.55
CLK3-202ENST00000395066 CRYBG1Q9Y4K1 1723 aa24.72■■□□□ 1.55
CLK3-202ENST00000395066 PHF14O94880 888 aa24.71■■□□□ 1.55
CLK3-202ENST00000395066 ME3Q16798 604 aa24.71■■□□□ 1.55
CLK3-202ENST00000395066 JARID2Q92833 1246 aaPredicted RBP24.71■■□□□ 1.55
CLK3-202ENST00000395066 VPS37CA5D8V6 355 aaPredicted RBP24.71■■□□□ 1.55
CLK3-202ENST00000395066 NMIQ13287 307 aaPredicted RBP24.71■■□□□ 1.55
CLK3-202ENST00000395066 KCNH5Q8NCM2 988 aa24.71■■□□□ 1.55
CLK3-202ENST00000395066 RUFY2Q8WXA3 655 aa24.71■■□□□ 1.55
CLK3-202ENST00000395066 RBM8AQ9Y5S9 174 aaKnown RBP24.71■■□□□ 1.55
CLK3-202ENST00000395066 LMO7Q8WWI1 1683 aa24.7■■□□□ 1.55
CLK3-202ENST00000395066 KCNJ4P48050 445 aa24.7■■□□□ 1.55
CLK3-202ENST00000395066 TMEM87AQ8NBN3 555 aa24.7■■□□□ 1.55
CLK3-202ENST00000395066 BOLA2Q9H3K6 86 aa24.7■■□□□ 1.55
CLK3-202ENST00000395066 CCDC183Q5T5S1 534 aa24.7■■□□□ 1.54
CLK3-202ENST00000395066 GRM8O00222 908 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 MYL6BP14649 208 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 PIP4K2AP48426 406 aaPredicted RBP24.69■■□□□ 1.54
CLK3-202ENST00000395066 GIMAP6Q6P9H5 292 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 MTMR6Q9Y217 621 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 CYP46A1Q9Y6A2 500 aa24.69■■□□□ 1.54
CLK3-202ENST00000395066 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP24.69■■□□□ 1.54
CLK3-202ENST00000395066 CCDC171Q6TFL3 1326 aa24.69■■□□□ 1.54
Retrieved 100 of 20,778 RNA–protein pairs in 9.6 ms